Gene detail

Detailed information of RMX50063.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2013:477664...482814
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002887

AGAAGAAGACCTCACAAGAGGTGCCTAAAAGTCctaaaagtaattattttgctGGCAGAAGTAGATCATAAGGGTCCAATGGAAAATCAAAAAACGGGTTCAAAAGAGGGCTCCTTGGAAAACAAGTTTGACTACGACGTTGTGTTACTGGATATTGAAGGAACAACAACGCCAATTTCGTTTGTCAAGGATGTTCTTTTTCCATATGCAAGGGACAATGTACGTGCCTTTTTAGAGAAATCTTGGGGAACTGATCAGTGTCAAGAGGATGTGAAGGCTTTGAGAAATCAGGCCAAGAAAGACAAAGATATGGAAGATATTGTTTTAATTCCAGATGAAGAGGAGAATCTTTCTGAAGATAATTCACGGACAAGtaagGAAACCATCATGGATGCTGTTGTTGCAAATGTCATCTGGCAGATGAATTCAGATAGAAAAACAACTGCCTTAAAACAACTCCAAGGCCATATTTGGAGAAAAGCATTTAATGATGGTGTTATTAAAGGAGAGGTGTTTGATGATGTTGTTACAGCATTCAAAAGATGGacttcaaacaaaatcaaaatttatatatacTCATCTGGAAGCACAGACTCTCAAAAGCTTCTGTTTGGTAACTCTAAGTTTGGCAACATTTTACAGTATATAAGTGGACATTTTGACACCACAGTTGGAGCTAAAATTGAGTCAGAGAGCTACAGTAAAATTGCTGATGCAGTAGATATGAAACCCTCAAGAATTCTATTTATCACTGATATTGTTAAAGAATCAAGAGCAGCATTTAAGGCAGGATACAGAACTGCTATCAGTGTTCGGCCTGGCAATGCACCATTGACAGATGAAGATAAAAGGGACTTTAAAGTGATATCTACATTTGATGAGTTATTTGAGGACACTGAAGAGCTGAGTCAtgcaacaaagaaatcaaaagttgctgattgataattatttctgtGAACCTTAAATATCAAAGAACAAATGGTGGTGGGGATTTTTCCTTGCAAGGGAGTTAAGAAAGATGAAAGGCACTAAGCTTGTCAGTCACAAGACTGCATCTGACTCAGTCCCAGTCCTTTGGGAAGCATGCAAGAGGTGAGGTGCATGTGAGGGAAGATGGGAAGGGGGTGAATCTCCTCTCTCTCCTCCCCCTTCCCAGTGACCCTTTCACATCTGTGGTGACTGACCTAGACTGCATATGAAAAATAAGCAACCACAGGAGGGGGATCAGAGACTGCATTGAAACTGATAATACAAACTCAACCAACTGTATGCTGAATGTTGTCAACAGCAGGATGATTGGATCTGATTGTTTGGTAACAACCCTAATTCAATAAAAACCGATTACatagaaatgaattttaccTGTTGCATGACTGGTTTAGAACATCTTAACTTGTTCTCAGAATGAAAAATGTGTAGACATTTTAATAACTTGTTCTGTTACACTCATGTGGAGGGAATCTGATGCTGAGAGTTCTCTAGTTAACACAAAGTGTCATTTTAGActgatttctttctctgtGGTGTGTCAGGGTTTTTCGCTCCAGCACCTAATTAAAAATACCCAAACGAGGATTTACACCTGATTGGTGAGGATCTCCTTGAAGGTGCTCAGTACAATCGCAGTCACCTTCTAGTCACCCTGGATGGTTCATAATTGCTTCAATGTTCAGATGCTTCCCTCACTTGGAAATTACCATCAACTTGATGCTAACTGAGcagtttctttgttgtgttGTCAAAATTATCCTTCATAGACCTTGTGCTCCAATagataaatagaaaataatgtaAGCTTATTTGGTGTGAAGATAGAGGAGGAGATTAGAGAATCAATTTTTGCTGAACCCCATATCCTCCTCTATGGGAGTGTCTCCTGGGATCAGAACAATCTTCTGTTTGTggtttaaagaaatgtttgacGTTTGTAGCTGGGAAGgggatttttgtttgtaatcaAGAAAATCACATCATGgctttcagtttgtttatttcaaataccAGCATTTTTGCAGTTAGGAATGGCTGAATTTTTCCTATGGTGCCAGCAACTTCTATAAAAATCATATCAAAAACTTAACTAAACAACAGCCAATCTGAGACACTAAAAAGTATCCACATCCATATGGCCAACATTGTTACCAGGGTCTTCTCCCCTCAGGGAGGAAAAGAGAggaccctgggaacgaggttgcTATAGGACTACGTCGTCGTGACGTCAGTTACGATTCAAAGCAGCTTCTTCCAGTTGGACGAAATATCACGTGTGAAGAGATTTAAGGTTAAACCTTTCATAACTTTGCTGTGTTGAGCCGTTCTGTCTCGCGATTTCTTAGCACCCGACGTAGTATCTTTCCACTAGGTGATTTTGGTATCTGATCAATAAACTCCACACCACCCCTGAGCTTTTTCTGTGGTATCACTCTTTTAGCCACAAATTCCATTATCTCCTCTGACGTCACAGAACCACGACGAACCACGAAAGCCTTCGGGAGCTCTCCGGCTTCGAGATCGGGGACGCCGATGACAGCCACGTCGTCAACGTTTGGATGGGAAATCAATAAAGCTTCAAGTTCGGCCGGCGGAACCTGAAATCCCTTGTATTTTATAAGTTCCTTTATTCTATCGACGATAAAGAAGTGTTCATCCTCATCATAATGTCCAATATCTCCTGTGTGAAGCCAGCCATCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009008 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023943 all species →	Family	Enolase-phosphatase E1	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR006439 all species →	Family	HAD hydrolase, subfamily IA	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR027511 all species →	Family	Enolase-phosphatase E1, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20371 all species →	ENOLASE-PHOSPHATASE E1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0019509 all species →	Biological Process	L-methionine salvage from methylthioadenosine	Interproscan
GO:0043874 all species →	Molecular Function	acireductone synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09880	mtnC, ENOPH1; enolase-phosphatase E1	EC:3.1.3.77	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.