Gene detail

Detailed information of RMX50083.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2013:743994...751496
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00002932

ATGTCCAATGTTCCGTGGCTTTGTATTGGGGTTGATGTTGGTGGAACAAACACAGATGCTGTGATACTGCGACAGAAGACTGTTCTATCCTCAGCCAAAGTTCCCACTACAGAAGATGTTACATCTGGTATCACTGAAGCAATTAAATCAACTCTCACCCAGCTTCCTGACGAATTTCAACCAAATCCTACTCAGTATGTTGCAAGGGTTAACATTGGCACCACTCATTTTGTGAATGCTGTTGTTCAAAGGAAATTCCTCACTAAAGTGGCTGTATTAAGGTTATGTGGACCAGCAACTAAAGCCATCCCACCTCTGTGTGATTTCCCAGCAGATCTGAGGAATGTCATTGGTGGAATGCATTTTTTTCTCAATGGAGGATTTCAATATGATTGTTCAAGTATTACTGATGTTGATGAGAATGAAGTAAAAAGGGTTGCTAATGAAGTACAAGCAGCAGGAATAAGAAACATTGCTGTTGTTGGAGTTTTCTCTCCTGCCTCTAAAGAGCAAGAAGTTCAAGTGGCTGAGATCATCAGATCAGTTCACCCAGGTATGAGTATGACACTTTCGCATGAAGTGGGTTTAATTGGCTTACTAGAGCGTGAGAATGCAACTGTTTTAAATGAGAGCCTAAAGCCACTATGCAAAAGGACTGTGGGAGCATTCTGTTCAGCCTTGAGGAATCTTGGTTTGAAGTGTCCATTTTATCTCACACAGAATGATGGAACCATAATAAGCATGCGAGGAGCTGCATTCTTGTCAGGTGTGCAAGATGCAATAGTTATTGACATTGGAGGAACAACCTCTGATGTAGGAGTTCTTAAAGGAGGATTTCCAAGACAAGCTTCTACAAGGGTTAAGATTGGAGGTGTGAACACCAACTTTCGAATGCCTGATGTATTAAGTGTGGGACTTGGAGGAGGATCAGTAGTGGAACAATTACAGGAGGGTATCACTGTGGGTCCATTATTTGTTATTTCTTTGTTACAGGAGGGTATCACTGTGGGTCCATTAAGTGTTGCTTACAAGTTGAAGACCGAAGCGTTAGTGTTTGGAGGGAAGACCATGACATCAACAGACATTGCTGTTGCTTCTGGCCTGTGTAACATTGGAGATAAGGAAAGAATTAAGGACATTCCCAAGGATGTCAGGGTTGGAGCAATGGCAGAGATCAAGAGAAAAATTGAAGCTGCAGTTGATCGGGTTAAGTTCAGTGGTGAGGACCAGCCTGTAATTCTTGTTGGTGGAGGTAGTGTTCTTGTGGATTTATCACAGAAATTAAAAGGAGCCTCAAAAGTTTTATGCCCTCCATACTATCAGGTTGCCAATGCGGTGGGCGCTGCCTTGAGTAAAGTTAGCGGAACATTTGATCAAGTTGTTCCTTTGAAAAATACAACTCGTGAAAAAGTACGTATTGAGGCCGAACAGATGGCGCGTAAAAGAGCCATGGAGGCTGGGGCTGACGAACAAACCTTACAAGTTATTGATAGGGATGAGGTACCACTGGCGTATCTGCCTGGTAATGTAGTGCGGTGTTTTCTGAAAGTTGTTGGTGATTTAGCAGAGTGCAAAGCCAATAGCCCCGAGGAGCTATCACAGTTTGGCACAGACATATACAGTGTCTTATCAGCCGAGGAGTTCTCTCCCATTCAAGAAGTTTCTGGTGAGGAGCAGCAGCCCAGCACACAAGAAGAGGACGACATTGTATTCAGTGATCCGTATGTAGACCCTGTAACAGGTGACTGGATTCTGAGCAGGTTTGATGTCGAGTGTATCACCATAGGAGCCGGTATCATGGGGTGTGGAGGGGGAGGTAGTCCTTACCTTGGGAGACTAAGGGCACTGGAGCTTATCAGGAAGAACAAGGAAATTCGTGTTATTCACCCAAACAGGTTAGGATCCACTCCTGAACTAACGGGTACCGTGGTGACACCTGCCTTTATGGGTGCACCAGTTATCTTGATCGAGAAGCTTTTCAGTGGACAAGAAAGTCTCTCAGCTGTGAAAGCAGCTGTAGCAGTTTTATGCGCTGGTGATGCTGTTAATGAACATGACAATGGAGAAGGAATCAAGGAAGTCAAAGGTGTTCAAGAGTGGATGTCTGCCAATAATGAGCCTCAATCCACTAAGAAACCCGTGGCTGTTGTATGTGCGGAGATAGGAGGTGCCAACTCTATCGAGCCCTTAGTGGCTGGAGCAGAACTGGGACTCCCCATCGTGGATGCGGATGGCATGGGACGAGCGTTTCCTGAGTTGCAAATGTTTTTGCCGTTTGTTTATGGTAGCCCAGCATACCCAGCGGCCGTTGGAGATGAAAAAGGAAATGTGGTCGCGTTGACATTTGCTGAAACACCCAAACACTTAGAAGGCTTTCTTAGAATTAAAACGGTAGAGATGGGCTGCATGGTTGGCTTTACGTTTGTCCTTGACTGGAAAGATGTGCAACAAAAAAGTGCCCTGTATACTGTGAGTAGAACATGGCGTCTGGGTAACACTGTTCTTCGTGCCAGACACAAAAAGGCGTCCCCAGTGAATAGCATTCTTCAGCATGAAAATGGAAAACTCTTAATGATTGGCAAGATAGCGGACGTAAGCCGTGTAACTGAAGGTGCCTTTAACAGAGGAAGGTTGCTCATTGAAGGCTCCGGACAATTTAATAATCAGAACCTTGGTATTGAATTCCAGAATGAAAACTACGTGGCTTTTGTTACAAAATATGATGGCTCCAGGAGTGTTCTTGCTACGGTTCCTGATTTGATCTCTTTAGTAGATGAAGATACAGGCCAGCCAATCACAACAGAGGAAGTTCGTTATGGCCTCCGAGTGGCTGTCATCGTCATGCCTTGCTCTCCTCTATGGACCACCCCGCAGGGACTGGCAGTTGGAGGCCCGGTGGCGTTTGGGTATAATGACGTTGTTTATAGTCCTGTGGATTCGTATGAGGAGCACCCTCCCATCCCCAGAAACTGA

Transcript

rna-pdam_00002932

TGTTGATCGACGGAGGAATGCAGGGGTGTTCCGCTCTCCACTAATCTGCCAACAGCTAGTGATTCGTACATGATAACCTCCATTAGCCTCCACGAACGTCCCCAATTCTCAAAGGTGTGAAGTTGAAGGGTGCAGAAGTGAGACATACATATCTTGAGTTACTGAGCTAAGTATATTCCTTAGGAGAGTCCCATGGGGTCGAGAGATCAATTTCCAACTTACGCACTGTTCCGCAATCGAACgttgtttttttcgttattaGGAGCCGTTTTTCCGCTTTGAAACTGGTGCATTATTGCCTTACCTCATATGATTGCCTGGTTTATCTGTGGTAGAGTACAAATAGGAGAGATAAccttttttagtgttttgagACCATGTCCTTAGCAGATGCGACCAATGTGAAATGACACTCCTTGTTTTATTCTTACttctaattaatttattcaaaatttttttttttcagttcttagCCATTTACACATACTTTTCCGAAATCTTGCATTCTTATCATGCCTTTTCTTTACATTATTTCGTAATTACGCTCTCAACacagaataatttttcacacaATGATAATTCTGTGGAGACACGTAAGCTCGgtatttttgatatttaatttttattaattaatggAGGAGAAACAAGAACCACAGGCCTGACTGAAACCTACCTAATAACTCTTTCAGTAAAGAGTGCAAAACCATGTCCAATGTTCCGTGGCTTTGTATTGGGGTTGATGTTGGTGGAACAAACACAGATGCTGTGATACTGCGACAGAAGACTGTTCTATCCTCAGCCAAAGTTCCCACTACAGAAGATGTTACATCTGGTATCACTGAAGCAATTAAATCAACTCTCACCCAGCTTCCTGACGAATTTCAACCAAATCCTACTCAGTATGTTGCAAGGGTTAACATTGGCACCACTCATTTTGTGAATGCTGTTGTTCAAAGGAAATTCCTCACTAAAGTGGCTGTATTAAGGTTATGTGGACCAGCAACTAAAGCCATCCCACCTCTGTGTGATTTCCCAGCAGATCTGAGGAATGTCATTGGTggaatgcatttttttctcaatggAGGATTTCAATATGATTGTTCAAGTATTACTGATGTTGATGAGAATGAAGTAAAAAGGGTTGCTAATGAAGTACAAGCAGCAGGAATAAGAAACATTGCTGTTGTTGGAGTTTTCTCTCCTGCCTCTAAAGAGCAAGAAGTTCAAGTGGCTGAGATCATCAGATCAGTTCACCCAGGTATGAGTATGACACTTTCGCATGAAGTGGGTTTAATTGGCTTACTAGAGCGTGAGAATGCAACTGTTTTAAATGAGAGCCTAAAGCCACTATGCAAAAGGACTGTGGGAGCATTCTGTTCAGCCTTGAGGAATCTTGGTTTGAAGTGTCCATTTTATCTCACACAGAATGATGGAACCATAATAAGCATGCGAGGAGCTGCATTCTTGTCAGGTGTGCAAGATGCAATAGTTATTGACATTGGAGGAACAACCTCTGATGTAGGAGTTCTTAAAGGAGGATTTCCAAGACAAGCTTCTACAAGGGTTAAGatTGGAGGTGTGAACACCAACTTTCGAATGCCTGATGTATTAAGTGTGGGACTTGGAGGAGGATCAGTAGTGGAACAATTACAGGAGGGTATCACTGTGGGTCcattatttgttatttctttgttacagGAGGGTATCACTGTGGGTCCATTAAGTGTTGCTTACAAGTTGAAGACCGAAGCGTTAGTGTTTGGAGGGAAGACCATGACATCAACAGACATTGCTGTTGCTTCTGGCCTGTGTAACATTGGAGATAAGGAAAGAATTAAGGACATTCCCAAGGATGTCAGGGTTGGAGCAATGGCAGagatcaagagaaaaattgaagctGCAGTTGATCGGGTTAAGTTCAGTGGTGAGGACCAGCCTGTAATTCTTGTTGGTGGAGGTAGTGTTCTTGTGGATTTATCACAGAAATTAAAAGGAGCCTCAAAAGTTTTATGCCCTCCATACTATCAGGTTGCCAATGCGGTGGGCGCTGCCTTGAGTAAAGTTAGCGGAACATTTGATCAAGttgttcctttgaaaaatacaactCGTGAAAAAGTACGTATTGAGGCCGAACAGATGGCGCGTAAAAGAGCCATGGAGGCTGGGGCTGACGAACAAACCTTACAAGTTATTGATAGGGATGAGGTACCACTGGCGTATCTGCCTGGTAATGTAGTGCGGTGTTTTCTGAAAGTTGTTGGTGATTTAGCAGAGTGCAAAGCCAATAGCCCCGAGGAGCTATCACAGTTTGGCACAGACATATACAGTGTCTTATCAGCCGAGGAGTTCTCTCCCATTCAAGAAGTTTCTGGTGAGGAGCAGCAGCCCAGCACACAAGAAGAGGACGACATTGTATTCAGTGATCCGTATGTAGACCCTGTAACAGGTGACTGGATTCTGAGCAGGTTTGATGTCGAGTGTATCACCATAGGAGCCGGTATCATGGGGTGTGGAGGGGGAGGTAGTCCTTACCTTGGGAGACTAAGGGCACTGGAGCTTATCAGGAAGAACAAGGAAATTCGTGTTATTCACCCAAACAGGTTAGGATCCACTCCTGAACTAACGGGTACCGTGGTGACACCTGCCTTTATGGGTGCACCAGTTATCTTGATCGAGAAGCTTTTCAGTGGACAAGAAAGTCTCTCAGCTGTGAAAGCAGCTGTAGCAGTTTTATGCGCTGGTGATGCTGTTAATGAACATGACAATGGAGAAGGAATCAAGGAAGTCAAAGGTGTTCAAGAGTGGATGTCTGCCAATAATGAGCCTCAATCCACTAAGAAACCCGTGGCTGTTGTATGTGCGGAGATAGGAGGTGCCAACTCTATCGAGCCCTTAGTGGCTGGAGCAGAACTGGGACTCCCCATCGTGGATGCGGATGGCATGGGACGAGCGTTTCCTGAgttgcaaatgtttttgccGTTTGTTTATGGTAGCCCAGCATACCCAGCGGCCGTTGgagatgaaaaaggaaatgtggtCGCGTTGACATTTGCTGAAACACCCAAACACTTAGAAGGCTTTCTTAGAATTAAAACGGTAGAGATGGGCTGCATGGTTGGCTTTACGTTTGTCCTTGACTGGAAAGATGTGCAACAAAAAAGTGCCCTGTATACTGTGAGTAGAACATGGCGTCTGGGTAACACTGTTCTTCGTGCCAGACACAAAAAGGCGTCCCCAGTGAATAGCATTCTTCAGcatgaaaatggaaaactcTTAATGATTGGCAAGATAGCGGACGTAAGCCGTGTAACTGAAGGTGCCTTTAACAGAGGAAGGTTGCTCATTGAAGGCTCCGGACAATTTAATAATCAGAACCTTGGTATTGAATTCCAGAATGAAAACTACGTGgcttttgttacaaaatatgATGGCTCCAGGAGTGTTCTTGCTACGGTTCCTGATTTGATCTCTTTAGTAGATGAAGATACAGGCCAGCCAATCACAACAGAGGAAGTTCGTTATGGCCTCCGAGTGGCTGTCATCGTCATGCCTTGCTCTCCTCTATGGACCACCCCGCAGGGACTGGCAGTTGGAGGCCCGGTGGCGTTTGGGTATAATGACGTTGTTTATAGTCCTGTGGATTCGTATGAGGAGCACCCTCCCATCCCCAGAAactgatgaatttttaaataggaaataaaagcATTATTTCACACAAATGATTCTAAttgttaagtaaatttttaaactaaggaaaacaatagttgtttttaaaagaaatatattatgGGTAATTTGggttgataa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20906 all species →	DUF917_C	Protein of unknown function DUF917, C-terminal	Domain	Interproscan
PF01968 all species →	Hydantoinase_A	Hydantoinase/oxoprolinase	Family	Interproscan
PF06032 all species →	DUF917	Protein of unknown function (DUF917), N-terminal	Domain	Interproscan
PF05378 all species →	Hydant_A_N	Hydantoinase/oxoprolinase N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024071 all species →	Homologous_superfamily	DUF917, C-terminal domain superfamily	Interproscan
IPR048350 all species →	Domain	DUF917, C-terminal domain	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR045079 all species →	Family	Oxoprolinase family	Interproscan
IPR002821 all species →	Domain	Hydantoinase A/oxoprolinase	Interproscan
IPR010318 all species →	Domain	DUF917, N-terminal domain	Interproscan
IPR008040 all species →	Domain	Hydantoinase/oxoprolinase, N-terminal	Interproscan
IPR027479 all species →	Homologous_superfamily	DUF917, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11365 all species →	5-OXOPROLINASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006749 all species →	Biological Process	glutathione metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0017168 all species →	Molecular Function	5-oxoprolinase (ATP-hydrolyzing) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX50083.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.