Gene detail

Detailed information of RMX50090.1 in Pocillopora damicornis

Genomic Location: SczhEnG_2013:105270...110117
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00002824

CAATCGAACCAGGACAGCGATAGTCCTGTTGCGAAACGAGTACCTTGATCGTTGAAATTTCGTCATTACTGTAAAAGTCATCTTCCGTTAGGTCTGATCAGGAACGCGGAGTTTCACAAAGGCTTTTATTTTCGCTGTAAAATGAGCGACAGCGACGTAAAATCCACAAGGCCATTCAAACAGCGGAAAAGTTTTGtcaGTCGGAGAGATGAAGTTGCCGGAATCCGAGCCAAGTTCCCGTCAAAAATTCCTGTTATAGTCGAGAGATATCACAAAGAAAAGGATTTGCCGCTACTCgataagacaaaatttctcgtTCCTCAAGAGCTAACTATGAGCCAATTCGTGACAATCATTAGgaATCGCATGTCATTATCATCAACACAAGCTTTCTACCTCattgtaaacaacaaaagtttAGCAAGCATGTCTATGACAATGGCAGAAGTTTACAAGGAAGAGAAGGATGAAGATGGATTCCTGTACATGGTTTACGCTTCTCAAGAAATGTTTGGCTCATGACAAGCATAAAGTGAGAAAAGGATACTAATACAGACATAATGTCACTGGagaacatttcctttttagaaAAAACAGTTCAGAAATAGGAGAGGATTGAACATTTAAGTCCAGAATCATCGCCTTAGATAAACGTAAAATTGTGAAGAGTCTCATGTATTGTGTATGTATCCTTCAACATCAGAAAGTTTTATCAGTATTCTAAAGGGTTCAATTTGTTAGTTAGCACCATATCTTGTGATAATCTGTAGATAAAACAGAGGTTTTTTGTTAACTGTTGTGATAAATAGTGATTAATCTTCTTTGGTTGTCCTCCAGCAGGTGTGTAGTGATTAGATAGTAGATATGTAACTTTGAATCTCTCAGcaattttcatgatattttgctaaatttgataaaaaaaaaaaattggaaagaaatcAATTGGATGATGTTTTATCAACAAACATTCCATGCAGATGTGAAGATAATTCCCATGGCAATGTCATGATATATTAGGTGGTGCTAATTTTCTACTAGATTTGATCTTGGTCATTTTGTCAGTGTTGGTAGTGTGGAAAAGAGCAAATATGTTCCAATGTGTCATGCTGGGGAGATGATCTATTTTTATCTCCTTCACTTATGTGAAAGTTCTAAGGGGAATTTCATACAGTATCTATACAATTTCAATTATTGAGATGATACagaactaaatttttttctgatcataAACAGATTTCAAAATCTGCCAAAATGAGAACTTGCCCATTTTTCCTTCCCCACAATGTCCTAAGTCAACACTTGCGTCCTCGGCAGTTTTACCAATGTGTTTATTTCTTGCCTCAAGTCAGGTTAACAAAGTAAAGGTGAAGTCAAGAGACattaacttttccttcattcaTGGTATTAAGAAAGGATATATCATTAAATGTCATTACCTAGATATGCTAGgagttatttaaatttatttctaatttaaatGTGTAGCATATAAGAAGGTTATAAAGATTATGCGAATGAAATCTAACTTAAGCTCTTATTAAGTAGTAGTAACATTCAACTGATTACAGGGGTTTCCAAAAAAGCCAGTTGCTAATGGTTTACCACTGTTTATGAGACCTCTAGCTGCTGTATGTTATCCTGCAAGCAGACTCATATTTGGGTTTTGCCTTACAGCCCCCTTTCCAGTCATTAAGCTCTCTTTTCCACCATAAGCAGCCATTTATGGAAAGAAATCATTGAAACCCTTGtgattatgataattattaggcttttagttttacaaaatcttaaagaagaaattttaaatgtatttaaatttcTGGTGTGTATGGTTTGAGAGTTGATATTATAATGTGTGAGTTTGGTTTTCATATGTAGAAATAATTAAGTATGTAGTTCTTGTGATGGATTGGGCAAGAATACTTGTGTTTCGTGAATTTTTCTGGCATGTTTTGCCTGGAATTAATGTAACTCTCAGATTATTTGGGAATAATATTCAAGTAGAATTGCACCTACACACCAATGCTGGTTTTACAGTGTAACTTAAgaaaatgctttctttttcttacaaacaTCTCATCACCTTGATTTAAAAGGGAAGTTTGTGAGGTATTAACCagaaatatataatatacATTACActtaccaagaaaaaattaacatatgaTTTATCATCCccaattttgttgtttcatgTGTGCATGCAGAAGCTAAACTTTTAATTGAATGTATCTTGCATGTTAGACTTCTCAGCTTTTGAATTTCTGACTTCACTCAAGTAATGGGCAAATTGTTGATCATTAACACATTATGACAATAGGCCAATTTgcagttgtgtacttagtcaccaagcctttgatttggagtaaGGCTGAAGTTGACCAtattgtgatagagaccaatATCTAGTTcacatgataacaaagtattttttatcaaacctGCTGCATTTGAAAggcagcaaggtttgtatcataacagGGTCAacttagcctcactcctgttcaaaggcttggcaaccaagcactCAGTTGTTAAATGGACTACTGGGAGATAGACTCACTGTTGGCTGGAAAAAAacgtcttttgtttttgtgtttgtttcttcacTTGCTTGTTTTTGAACTCCAAGCACATAGTGAGGTAATTTGGGTTGCTGATGGAATTTTCCCTAATAAAGTTTATCTATCAGAGTCTAAGTGGAGAAAGTTAATGTATTGTGAGTAAGAAAGTACTCTTGTTTTTATATGGTATAGCACCATTGTATTAAAACCATTCCAAATCTTTATCTTACTGTTAagtttttgatttgaaatgtCCTTTCATTCTGGcaattcataattttcttaGTATATGTGAATTTGTAAGGCTTATTGATCTATTATATTTTGGAGGATCCTGGGGTGGATACATTTGAGACTACGTTGAGGAAAAACAGTTGTAGTTTGAAATGtgtcttaaattaaaaacacaatGCTTGGCTTGATTAAAAGAACTTGTAAAGGTCTAGGTGACCCTATGACCTTGCGTACTCTTTATTGCTCATTGGTTTGCTCAAACCTGGAAAACAGTTTGGTGGTGTGGTCTCcctaaacaaaaagaaatattgata

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UBL\|ATG8 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02991 all species →	ATG8	Autophagy protein Atg8 ubiquitin like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027731 all species →	Family	Microtubule-associated protein 1A/1B light chain 3C	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR004241 all species →	Family	Autophagy protein Atg8 ubiquitin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10969 all species →	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000421 all species →	Cellular Component	autophagosome membrane	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006995 all species →	Biological Process	cellular response to nitrogen starvation	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0097352 all species →	Biological Process	autophagosome maturation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10435	MAP1LC; microtubule-associated protein 1 light chain	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.