Gene detail

Detailed information of RMX50331.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1987:11116...23278
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00006904

ATGGAGAGCCGCGTTGTTCTAGCGTGCATGATATGTTTTGTCCTGTCTCAGTCCGCGTGTGGGTCAGACATAGGGCTCGGAAGGGAAAGATCACCAGGACTGCTAGAAGACGTCCCAAATGCTGGTTATTCATGTGTGGGGGTAATTTGCCAACTCCCTTTAAAATCCATTGGTGCAGCAAAGGAAAAAGCTGGAAGTGGACTTAAAACACGTACAAATGTGGTAAAACCTGAATTTATCACTGAACCAGAAGACCAGTTTGTCCTGCCAAACTCACCGTCAGTCAATTTGTTGTGCGAGGCCAGATTTGTGTTAGACTTAACTTTTCATTGTAGTGGTGATTTACTTCAAAGAGAAATTCATGAAAGTCAAACCGAGAACCCAGGGAAGTTGCTGATTGTGGAAATAACCATATCTCAGGACCTCTTCAAAAACAATGCTACTGATGCTGTCTGCACTTGTGTGGCTACTGGTGATAAGGGTCAAGTAATAAAAAATCTGGACAAAAATATAGTGATTTCACCGTCTGTTAACACAAGAGTACCAAAGAACACTCTGGTCACTTTGAAATGCAAGCCTCCAGCAGGAGTTCCAAGACCAACGGTCTCCTGGTGGAAAGATGGTCGTCTCTTGGATTCAAGCAGCAGAGGAGTTCTGTTTGGAACTGATCCTAACTTCCTTGAGGTCATCATAAGGAAAGCAAAAATCTCACATGGAGGGCATTACACCTGTGAGGTGTCAAACCTTGCTGGAAGCCAAAAGAGTACTGCTATCAAGTTAACTGTTTATGTTGATGGTGGTTGGTCTGAGTGGCAGGAGTTTTCACCTTGTAATGCACCCAAATGTGGAGCTGGGAGGAAGATGTTAAAACGGTTGTGTTCAAATCCTCCACCTCAAAATGGTGGAGACCTCTGTGAAGGTTCCAATATCAAATACGAGCCATGTCAAGACTTCTCTCCAGATATTAGTATAACTTGTCCTGATCCCATCAACATATTTGTCAACCAATCAGATGTGAGATTGTTGAATATCTCTTGGAATAAGCCTGTTATTCACAGTGCAGGGAATGATACAAAGTTCTCAGTAAAAGTTATTCCTGATTGGGCCCAGCCACCTGCTTTGTTTGAAGCAAAAAGTTCGGTGTATGTCATCAAGTATTTAACACAGGATAAGTGCGGATACACAGCCAGTTGTTCCTTCAACATTACAGTGTATAATAATTCTGTACTGATGGAGAGTCGCCTTTGCGTGTGCAACCCCGAACTGCAAGGGAAACACTTTGGCTTCAAAAGCACCACCAGTCATTATTTCAACAGGTTATTTTTAATTGTCCCTGCTGTATTACTGCTGGTGGTGTGTATAGTCTTATTCATCTATGTAAACCGGTATAGAAGTCTACGTAAGCGATTTGGCCTTTCTGTCGCGAGGCAAAATGAAGGTACATGGACACATGCTCACGAGTGTACATTCTGCTCAGGTCATGACGTAGGTTCAAAGAATATCACAGACGAAAAAGGGCATGTTGTATCTCGGTGTGCATCCTATGCAGAGATTCCACCACTTAATAGAAAGTTGACTGCTGCATCTCCAACGGGCTCTGGAGCTTTTGACTTCCAAGGAGCAAGCGAATATCCAGCAGCATCAGCATTGCTCAAGGGGCGAGGGAAGACAATGCAGGTTGAAGCTCACGTTAACGGTGAAGAAAGGGAAGATACTTCTCGAAACTTCAAGAGGACATATTCGTCTGTTAGTAACAAATCAACAGCGTCTGAAATCTCACGAATGATGTGGAACATCTCCAACATTCCGGAAAACGCTGATCCAAAAATGGTCGCTTGTGGACTTGTGGATCACAACGGAGGGAAATTCACAATAGGGAATACTGGTGTGAGCCTAACCGTACCAACAGGAGCCATCCCAGAGGGTCGCACTGAAGGAATTTACATCGCTATTGTAAACAAAGAAAAAGAACACCCGCAAATCACTGGCAAACAGTCACTGCTGAGTCCAGTGGTTAAATGTGGTCCCACTGGTCTCAAATTTCAGCGACCAGTGACATTGAGTATACCACACTGCGCGCTTCTTGATAGAGGAGCATGGAAACTCAAAGTGCAGTATAATGAAAGTGAACCCAGCACAATTGCAGATTGGAAGCAGCTGATTGATGTCAGCACTCAGGATGGAACTGAGGACTCCCATGTTTTAGTTGGACCCAATACGGTCCATTTGATGGTAGATCATTTTACCCTCTTTGCTGTGATTGGAGAGTCAACAGCCAATCAGAAAGCCGAGCGAGATTTGCAGGTTTTAGCTTACGTTACACCTCCAGAAGCCAACTCCGACTGTGTTGTGAGAGTTTATTGCGTTGAAGGCACTCCAGCAGCAATTGAGGATGTACACAATCATGAAATAAAGAAGTATCGAGGTGAAACGATTGAATCTCCTCAACAACTTCGCTTCAAGGACGGCGGGGGAGATCTTTTAGTCGAACTTACGGATTGTCAAACGGGCTGGCAGCCCAGACTGAAAACAAAGAAAATTCGTTTCCGAGACATTTGGGAAGGCATCCACCGCTTACCGAGTGCTACGTTTGTGTTCTCCTTGCGTGACACAACTGTGTCTGGATTTAGTGCTCAATTTGACGTGAGACAGGATTGTGAAAATGGTGACGAAAGAGAAGTCAATGTTGTGACAACGGTCAAACGAGGACATGAGGAAAGTACGGGACCAAGGAACGATCAAAGGCAATCAAACACCAGCCTCGCTGCAAGGTGCGAAGATTCGGCAAACTTTCCTACAGGGGAAAGTTTTGCGTGCCTGATGGATCATTCCACGGCATTGTTGAATGCAGGATCAATCGGTAATCCTTGGCATTATCGACAGTCAGAAGTCGCTGGAACATGTGGGGGTATCCCTTCCTCGTCTCCCATGTCTGCAAGGCAGATGTCGTCTGGATACTTTTCTGTTGGTTTCGAGTCACTGCAAACTGTGGGTTTGCTGAGTCGCGAATTGCGGAGTAAACTTGCTCTCATACTTGACCCCCCACTAGAGTCCGACTGGAAAGTTTTGGCAGATAAGTTTGGCCTCACTCATGAACACATTAAGTGGATTGATAGTAGGAAAAATCATTCTCCTACAGAAATCCTCTTTAACTATTTGGAGACGATTGATGTACCACAATATCGATTTTCTCTGCCAAAATTATCAGAAATACTGCAGCAGATTGGTCGGGACGATGCCTTTGAGATTGTTACCGCTGAAATGTCAAAGAAGAAAGAAACAGAAGTTTGA

Transcript

rna-pdam_00006904

ATGGAGAGCCGCGTTGTTCTAGCGTGCATGATATGTTTTGTCCTGTCTCAGTCCGCGTGTGGGTCAGACATAGGGCTCGGAAGGGAAAGATCACCAGGACTGCTAGAAGACGTCCCAAATGCTGGTTATTCATGTGTGGGGGTAATTTGCCAACTCCCTTTAAAATCCATTGGTGCAGcaaaggaaaaagctGGAAGTGGACTTAAAACACgtACAAATGTGGTAAAACCTGAATTTATCACTGAACCAGAAGACCAGTTTGTCCTGCCAAACTCACCGTCAGTCAATTTGTTGTGCGAGGCCAGATTTGTGTTAGACTTAACTTTTCATTGTAGTGGTGATTtacttcaaagagaaattcatgAAAGTCAAACCGAGAACCCAGGGAAGTTGCTGATTGTGGAAATAACCATATCTCAGGACCTCTTCAAAAACAATGCTACTGATGCTGTCTGCACTTGTGTGGCTACTGGTGATAAGGGTCAAGTAATAAAAAATCTGGACAAAAATATAGTGATTTCACCGTCTGTTAACACAAGAGTACCAAAGAACACTCTGGTCACTTTGAAATGCAAGCCTCCAGCAGGAGTTCCAAGACCAACGGTCTCCTGGTGGAAAGATGGTCGTCTCTTGGATTCAAGCAGCAGAGGAGTTCTGTTTGGAACTGATCCTAACTTCCTTGAGGTCATCATAAGGAAAGCAAAAATCTCACATGGAGGGCATTACACCTGTGAGGTGTCAAACCTTGCTGGAAGCCAAAAGAGTACTGCTATCAAGTTAACTGTTTATGTTGATGGTGGTTGGTCTGAGTGGCAGGAGTTTTCACCTTGTAATGCACCCAAATGTGGAGCTGGGAGGAAGATGTTAAAACGGTTGTGTTCAAATCCTCCACCTCAAAATGGTGGAGACCTCTGTGAAGGTTCCAATATCAAATACGAGCCATGTCAAGACTTCTCTCCAGATATTAGTATAACTTGTCCTGATCCCATCAACATATttgtcaaccaatcagatgtgaGATTGTTGAATATCTCTTGGAATAAGCCTGTTATTCACAGTGCAGGGAATGATACAAAGTTCTCAGTAAAAGTTATTCCTGATTGGGCCCAGCCACCTGCTTTGTTTGAAGCAAAAAGTTCGGTGTATGTCATCAAGTATTTAACACAGGATAAGTGCGGATACACAGCCAGTTGTTCCTTCAACATTACAGTGTATAATAATTCTGTACTGATGGAGAGTCGCCTTTGCGTGTGCAACCCCGAACTGCAAGGGAAACACTTTGGCTTCAAAAGCACCACCAGTCATTATTTCAACAGgttatttttaattgtccCTGCTGTATTACTGCTGGTGGTGTGTATAGTCTTATTCATCTATGTAAACCGGTATAGAAGTCTACGTAAGCGATTTGGCCTTTCTGTCGCGAGGCAAAATGAAGGTACATGGACACATGCTCACGAGTGTACATTCTGCTCAGGTCATGACGTAGGTTCAAAGAATATCACAGACGAAAAAGGGCATGTTGTATCTCGGTGTGCATCCTATGCAGAGATTCCACCACTTAATAGAAAGTTGACTGCTGCATCTCCAACGGGCTCTGGAGCTTTTGACTTCCAAGGAGCAAGCGAATATCCAGCAGCATCAGCATTGCTCAAGGGGCGAGGGAAGACAATGCAGGTTGAAGCTCACGTTAACGGTGAAGAAAGGGAAGATACTTCTCGAAACTTCAAGAGGACATATTCGTCTGTTAGTAACAAATCAACAGCGTCTGAAATCTCACGAATGATGTGGAACATCTCCAACATTCCGGAAAACGCTGATCCAAAAATGGTCGCTTGTGGACTTGTGGATCACAACGGAGGGAAATTCACAATAGGGAATACTGGTGTGAGCCTAACCGTACCAACAGGAGCCATCCCAGAGGGTCGCACTGAAGGAATTTACATCGctattgtaaacaaagaaaaagaacaccCGCAAATCACTGGCAAACAGTCACTGCTGAGTCCAGTGGTTAAATGTGGTCCCACTGGTCTCAAATTTCAGCGACCAGTGACATTGAGTATACCACACTGCGCGCTTCTTGATAGAGGAGCATGGAAACTCAAAGTGCAGTATAATGAAAGTGAACCCAGCACAATTGCAGATTGGAAGCAGCTGATTGATGTCAGCACTCAGGATGGAACTGAGGACTCCCATGTTTTAGTTGGACCCAATACGGTCCATTTGATGGTAGATCATTTTACCCTCTTTGCTGTGATTGGAGAgtcaacagccaatcagaaagcCGAGCGAGATTTGCAGGTTTTAGCTTACGTTACACCTCCAGAAGCCAACTCCGACTGTGTTGTGAGAGTTTATTGCGTTGAAGGCACTCCAGCAGCAATTGAGGATGTACACaatcatgaaataaagaagTATCGAGGTGAAACGATTGAATCTCCTCAACAACTTCGCTTCAAGGACGGCGGGGGAGATCTTTTAGTCGAACTTACGGATTGTCAAACGGGCTGGCAGCCCAGACTGAAAACAAAGaaAATTCGTTTCCGAGACATTTGGGAAGGCATCCACCGCTTACCGAGTGCTACGTTTGTGTTCTCCTTGCGTGACACAACTGTGTCTGGATTTAGTGCTCAATTTGACGTGAGACAGGATTGTGAAAATGGTGACGAAAGAGAAGTCAATGTTGTGACAACGGTCAAACGAGGACATGAGgAAAGTACGGGACCAAGGAACGATCAAAGGCAATCAAACACCAGCCTCGCTGCAAGGTGCGAAGATTCGGCAAACTTTCCTACAGGGGAAAGTTTTGCGTGCCTGATGGATCATTCCACGGCATTGTTGAATGCAGGATCAATCGGTAATCCTTGGCATTATCGACAGTCAGAAGTCGCTGGAACATGTGGGGGTATCCCTTCCTCGTCTCCCATGTCTGCAAGGCAGATGTCGTCTGGATACTTTTCTGTTGGTTTCGAGTCACTGCAAACTGTGGGTTTGCTGAGTCGCGAATTGCGGAGTAAACTTGCTCTCATACTTGACCCCCCACTAGAGTCCGACTGGAAAGTTTTGGCAGATAAGTTTGGCCTCACTCATGAACACATTAAGTGGATTGATAGTAGGAAAAATCATTCTCCTACAGAAATCCTCTTTAACTATTTGGAGACGATTGATGTACCACAATATCGATTTTCTCTGccaaaattatcagaaataCTGCAGCAGATTGGTCGGGACGATGCCTTTGAGATTGTTACCGCTGAAAtgtcaaagaagaaagaaacagaagttTGATTCCCAGCTTTAGTAGAAATGCCATGGGAAGCAACATTTTACACTAACAGATCTTCAGGAGAAAGGCCTTTTAAGGCGTTTAAAGGTCTTTACGTTACAACCTTTTCTCGAAGTTGAAATTCTTGGCAAAGGATCTTAACAGTGCAGAAGGCTAATGTTCTCTAATATGAGCTGAATTTATGTTCATTCCTCTAAAGAATGATCATTTTCGCTTTTTTAGCACTGAACATTGGAAATAAGTTCCCGTTGTTCCGTATATTAACTAGATACATAATGGGAGATGTTGAGTAGTCATTTGATGGCttaaatgtcattttattgtttgcaaaacaatttctcaGACCAGAAATCGTTCTTACGCTATTTTCTAAGATTTATCAGGCTTTTTGAAACGAGTGTTTGACCTTCCGGACAAGAGCGTATGAAAAGGCTTGCTAGGATGacttatgtttttattttctggtaCAGTGACATGATTAACCACCTCTCCGGTCATCATCAGTGCTTGGCGAGGTAAATATGAGAAAAGACAGGTACTTTGGAATCTAGGTTTGTCACTAACGTACCAAATGCTGTAGTTTTAGCTTTCGCCAGGGGGCCTagttttgatgattttcataGCTTTGGTAACGCTACATTTACCTTATACCAAAGAGATCGATGTATTATTTTAGTACtatctatattttttattttgttgtttttggacattcttttattttttaatttaaaatatttataatctGATCTCtgtgaaaaaattggaaataaactTAGAAATATAAACCATGTACCCTTACGTAATCTTCAAGAATTTATTGAACACGCTAACTCGTTCGTCGCCTGAGGTACATTTACGTTCAGTAGTGTAAATATTGAGATAAGTAATTTCAAGGGAGTCTAGGCTATGACTGTTTTAAGGGAAGGGACGATAACAACGAAGAATTTTGAAACGAGTGTTATCTTTAGTTTATTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF17217 all species →	UPA	UPA domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR033772 all species →	Domain	UPA domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR037936 all species →	Family	Netrin receptor UNC5	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582 all species →	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005042 all species →	Molecular Function	netrin receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038007 all species →	Biological Process	netrin-activated signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX50331.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.