Gene detail

Detailed information of RMX50409.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1972:76767...85425
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00010425

ATGTGGCGAGGCTTTAGAGTGTACAGTGGGATCTGCCCGGACCCTGAGTGTCGCACAAAACTTTATTTTCCATCTTATGCTTCTTCGAGTGTAGAGTGTACGGGATGCGGGCAACACCACGCGAAAGACAGCCTATTCAACTTAGAAGATATCCAAGACCCAGAGATTGCTCTTCGCAGTCTTCTGCGTTCAGTGTTACTTGGTCATACTTCCTCTAAGACAACACCAGATCTGGTGAAGGTTAAGGGATATTCAAACTATCACTGTAAACTCTTGTCACCGCTGTTGACGATCTATGGCATGGATAAACGAACCGGTGAAGGAAAACTGTTGAGCGAAATGGGACAAGGAGACATCTTCGATTGCGCTCTGCTTGGAGATCGTGCATTTCAAATTGAATTAGAACACGTGGACACAGCTGGCTATGGACGGGATAGTACAGGATCACAGTCATATCTCGAGCAAACATTACAGGCCATTAAAGTTGTCAATGATAACGAAGAACGTCTTGTCCCAGTTCATGTTGATGGGGACGGCCATTGTTTGGTTCATGCCATCTCTCGCGCCCTTGTTGGAAGAGAAATCTTCTGGCACGCACTCAGAGCAAACCTAAAGAGGCATTTGCAAACGGAATTGCACAAATACAAAGGGTTGTTTAGAGACTTCATCCATGATGATGAATGGAAGGATATTATTGCTGAGGCTGACCCTTATTTTGAACCCCCTCCAACCTCTGCCGAAGGGCTGGGGTTAAGAAATATTCATCTCTTTGGCCTTGCGAATGTGCTGCACAGGCCTATCATTCTCCTTGACAGTGTCACAGGAATGCAATCTAGTGGTGATTACACTGGAATATTTCTTCCTGCTTTGATCCCAGAAGACTTGTGCAGAAGCAAAGACAACTTGCTCAACAAACCACTGGCAGTTGCTTGGAGTAGCCCAGGACGTAATCATTTCATTCCTCTTGTTGGAATAAAAGGAAGACCTTTGCCCAGGCTTCCACATTGGTTGATTCCTAAGGCCTGGGGTATACCCAATGAGGTGGTCAAGACGTATGTTGAATTTGACAGAGATGGTCACTGTCTCATTGGTGGAGACCGCTGCCTTCAAGAAAAATATATACAAAGACTTGTTAAAGCAATGGATGAACTTTTTGTGAAAAAAAACAATATTAGTGCACAGCTGGTCACTGAAGTGCACCAATTTGTTTACAAACCATCTGGAATGGTGGGTGTTAAACCAGAAAATGTTACTGTGGCAGCCAAATCAGCTATTGCTGATGGTCGTCTCCATCGATGCCTGTCTTGCAATGCATTGTGTGAAGTACATTTTGATGTTTCCTCTGATGATCTTAAACCAGGAGGAGAACTCTATGAAATAGCTGTAAAAACTCATGGACCCCTAGAGGAAGGCCTTAGCTATTCTTTTCCTGCTTATGAACTGGTTTGTGTTTTTGATGCAGAACGGAACTCATTGGTGGCAGTTAAACACAAGATCAGCTACAAAGTTTATGGTAAGAAAGACAACTGCAAAGATGAAGGTCAACAGAATTTATTAACTGATATAAGTCACTGTCTACAGAATATGACTTTGCTTGAGTGCCATCTCTGCCATGGCCCCTTGCGCCGAGTCAAGTCAGACGGAACTGCAGTCTACGTTAATGGTGATCGCACAACAACACCGGTAGAAGGTAACAGTCGCTGTGGATGTGGATTCAAGCATTTCTGGAATGGAAGGGAATATGATAACAACCCTGAGAGTTTCCCAATAAGCTTGGAGTGGAATGGGACAACTGTGAAAGACACTGTGTTTTGGTTCCAATATGAACTGGACCCATCTCTCAATTCCAATGTGTATGATGTTGCATCAAAGCTGGTGCAGAAACACTTTCCTGGTGAATTTGGCAGTGAGAGACTTGTACAGAAAGTGGTTGACATAATTTTGCGACAAACGGCAAGAAAGGAAGGAGAAAACAAAGGAGCACGGCCTTCCATTACTTCACAAAATGCCTCTGGCGCAAACAGTGATCAAGATGTCAGCAGTGTTAGCTCCTACTCACCAAGTAAGATTATTCTGACTGGAGAAAAGAAGAAGACTTTTCATAAAGAAGAACTAACCATGAGCGACACAGAGAGAGTGTTAAAGACACGTACAGAACACCATGCTTCTGTTATGCAGAAGAGAAGAAGTGGAGAAGGCACAAAGAAAACGGCAAACAAAGAAGCTAAAGTGCAAAAACAGCAGACAAGTGTCAAACCTCAACAATCTGCCCAGCAAACAAGCCCTGCTAAAGGGAACGAGACCCAACCAGTTGTGAAACGAACAGAAAAGAAAGTGCGACTGTCCACATCAGATGGAAAACAGAGCATGTTGACACTTGCCATGGACACAACTTTCCAACAGCTTCTACTTTTGATTGAAAAAGAACTTGGTATTCCTCACACAGAGCTGCGAATTAGGTATGGATTTCCACCCCGTGAACTGCACCCTCCTGATGAAGGTCATGTGGATGACCCTGTTCCCTTGCAGCATGGTGACCGTGTGATGGTGGAACACTTAAAGCCTGTTGTCCCTGAGGAGCACCCTCCTGATGTTGTTATGTCAGAAGTAAAAAACGAGGGGGGTGAGGGAGTTACACCTACAACAAGAGAGATTGGGGAAGAAGGACAGGCACAAGCTGAAAACACAGCTGCCATGGCATCAGCCCTTGTGGCTCTTGGTACACTCACTGGTGGTGATATGTGGGAAGCAGTACAGAACTGTTATGAAATGTTTGACAAAGGAGGGTATTTTTATAACAAGGTCATGAATGATCTGGGTCAGCTTAAGCCAAATCAACATTGTACTTTATATTCCTTTCCAAACAAGGTGTTTGCTTACAATGCTGAAAAAGATCGGTTGGACCTTTGTCTTGGTAAACGGCACATCCAAGTGCAACCACTGGACGACGAAACATTATTGCAGGCTCACTCTCGTTCAAGTCAAGCACCTGTAGAGGAAACGAGCAGCAGCAGTGGTACGGGTGGGAAGGGTCTGTTTAGCGAGGCAAGCTTCAGTGGCGCCATTGCACCAAGAGATACATCCCATGCTCGGATGGCATTTTCAGGCCAGGGACGGACTCTTGCTGGTGCGCAATCAGCTCAGAAACAAACTGCTGAGACATCTCCATCAAGGATCCTACTGACCGATCCCCGATCTTCTCAGACAAACACCTCTAGCTCTACTACTGTGTTGGAACAACAGCAACCGCGACCCGGGCAAGGGGAGAATGTTAAAGATGTGGAAGAAGAAACAAATCTGCCTTCAGAGGCCATGGACACCCAGGGAGATGTGGAAAAGGAGGAAAATATGCAAGAAATGCTTGTGGAGAGTCCTGCTGCAGCGCAGGATGCTATTGATGTGGATCAGCCACAAGTAGAACAAGAAAGCACTACACAGCTTAGGAGTGATGGAAGGGTCGAAACAGTAGAGGTGAGCATGGCTTTACCGAAAACAGATGAAGTGAGCGGAACGGTAGAGGAAGCGGAAATGACGCGCGTGACAGCTGATGAAACAGAGGTGATGCGCGTTACAGACCAGGAAAACGAAAATATGGAAACAAATCAAGATGTAAGTCACATTGAAAGCAACCAAAGTAAGATTAAGAGTAATGTTGATGGTGTCAATACTCTTACTAATGAATTAGCAAACATTTCGGGGCAAGGAGACGACTCTAAACGTACAGAACCAGTTTCTGAATCGATGGAAACTGATCAGCTTAACCCAGAAAAATATTGCATGACTAACGAAGGCATGACAGCTACGTCAGATGAAGCGCAAGGCGAGGAGGAAATCAGAGGTTCAGAGCAAGATGACGTAACAGTTGATCCCATGAGTCCTGAGCCTAGTGACGTCACAATGGTGCGTGTATCTGTTGCCACAGAGATCGAGGCACCAACAGAAAATAGTGGCACAAGGTTTGTATCAACACATGATGTGACGGAAGGTGATACACCTCCGGTTGCTCAGGAATCGGAAGTTTCGCCGTTTATTATTGCGTCAAATCAACAAGCAGATGTTATGCAAAGTGGAAAATCAGTCGTAATGAACAGTGAAACAGCTGCTGGAAAAGATGGTGTTAAAGCTTCAATACAAGAGGAAAAATCTTCCAATGATCAAGGAGTGGCTGCTGAACTTGCAGCAGATACTAATGTAGAAAAGTAA

Transcript

rna-pdam_00010425

ATGTGGCGAGGCTTTAGAGTGTACAGTGGGATCTGCCCGGACCCTGAGTGTCgcacaaaactttattttccatcTTATGCTTCTTCGAGTGTAGAGTGTACGGGATGCGGGCAACACCACGCGAAAGACAGCCTATTCAACTTAGAAGATATCCAAGACCCAGAGATTGCTCTTCGCAGTCTTCTGCGTTCAGTGTTACTTGGTCATACTTCCTCTAAGACAACACCAGATCTGGTGAAGGTTAAGGGATATTCAAACTATCACTGTAAACTCTTGTCACCGCTGTTGACGATCTATGGCATGGATAAACGAACCGGTGAAGGAAAACTGTTGAGCGAAATGGGACAAGGAGACATCTTCGATTGCGCTCTGCTTGGAGATCGTgcatttcaaattgaattaGAACACGTGGACACAGCTGGCTATGGACGGGATAGTACAGGATCACAGTCATATCTCGAGCAAACATTACAGGCCATTAAAGTTGTCAATGATAACGAAGAACGTCTTGTCCCAGTTCATGTTGATGGGGACGGCCATTGTTTGGTTCATGCCATCTCTCGCGCCCTTGTTGGAAGAGAAATCTTCTGGCACGCACTCAGAGCAAACCTAAAGAGGCATTTGCAAACGGAATTGCACAAATACAAAGGGTTGTTTAGAGACTTCATCCATGATGATGAATGGAAGGATATTATTGCTGAGGCTGACCCTTATTTTGAACCCCCTCCAACCTCTGCCGAAGGGCTGGGGTTAAGAAATATTCATCTCTTTGGCCTTGCGAATGTGCTGCACAGGCCTATCATTCTCCTTGACAGTGTCACAGGAATGCAATCTAGTGGTGATTACACTGGAATATTTCTTCCTGCTTTGATCCCAGAAGACTTGTGCAGAAGCAAAGACAACTTGCTCAACAAACCACTGGCAGTTGCTTGGAGTAGCCCAGGACGTAATCATTTCATTCCTCTTGTTGGAATAAAAGGAAGACCTTTGCCCAGGCTTCCACATTGGTTGATTCCTAAGGCCTGGGGTATACCCAATGAGGTGGTCAAGACGTATGTTGAATTTGACAGAGATGGTCACTGTCTCATTGGTGGAGACCGCTgccttcaagaaaaatatatacaaagaCTTGTTAAAGCAATGGATGaactttttgtgaaaaaaaacaatattagtGCACAGCTGGTCACTGAAGTGCACCAATTTGTTTACAAACCATCTGGAATGGTGGGTGTTAAACCAGAAAATGTTACTGTGGCAGCCAAATCAGCTATTGCTGATGGTCGTCTCCATCGATGCCTGTCTTGCAATGCATTGTGTGAAGTACATTTTGATGTTTCCTCTGATGATCTTAAACCAGGAGGAGAACTCTATGAAATAGCTGTAAAAACTCATGGACCCCTAGAGGAAGGCCTTAGCTATTCTTTTCCTGCTTATGAACTGGTTTGTGTTTTTGATGCAGAACGGAACTCATTGGTGGCAGTTAAACACAAGATCAGCTACAAAGTTTATGGTAAGAAAGACAACTGCAAAGATGAAGGTCAACAGAATTTATTAACTGATATAAGTCACTGTCTACAGAATATGACTTTGCTTGAGTGCCATCTCTGCCATGGCCCCTTGCGCCGAGTCAAGTCAGACGGAACTGCAGTCTACGTTAATGGTGATCGCACAACAACACCGGTAGAAGGTAACAGTCGCTGTGGATGTGGATTCAAGCATTTCTGGAATGGAAGGGAATATGATAACAACCCTGAGAGTTTCCCAATAAGCTTGGAGTGGAATGGGACAACTGTGAAAGACACTGTGTTTTGGTTCCAATATGAACTGGACCCATCTCTCAATTCCAATGTGTATGATGTTGCATCAAAGCTGGTGCAGAAACACTTTCCTGGTGAATTTGGCAGTGAGAGACTTGTACAGAAAGTGGTTGACATAATTTTGCGACAAACGGCAAGAAAGGAAGgagaaaacaaagGAGCACGGCCTTCCATTACTTCACAAAATGCCTCTGGCGCAAACAGTGATCAAGATGTCAGCAGTGTTAGCTCCTACTCACCAAGTAAGATTATTCTGACtggagaaaagaagaagacttTTCATAAAGAAGAACTAACCATGAGCGACACAGAGAGAGTGTTAAAGACACGTACAGAACACCATGCTTCTGTTATGCAGAAGAGAAGAAGTGGAGAAGGCACAAAGAAAACGGCAAACAAAGAAGCTAAAGTGCAAAAACAGCAGACAAGTGTCAAACCTCAACAATCTGCCCAGCAAACAAGCCCTGCTAAAGGGAACGAGACCCAACCAGTTGTGAAACgaacagaaaagaaagtgCGACTGTCCACATCAGATGGAAAACAGAGCATGTTGACACTTGCCATGGACACAACTTTCCAACAGCTTCtacttttgattgaaaaagaacTTGGTATTCCTCACACAGAGCTGCGAATTAggTATGGATTTCCACCCCGTGAACTGCACCCTCCTGATGAAGGTCATGTGGATGACCCTGTTCCCTTGCAGCATGGTGACCGTGTGATGGTGGAACACTTAAAGCCTGTTGTCCCTGAGGAGCACCCTCCTGATGTTGTTATGTCAGAAGTAAAAAACGAGGGGGGTGAGGGAGTTACACCTACAACAAGAGAGATTGGGGAAGAAGGACAGGCACAAGCTGAAAACACAGCTGCCATGGCATCAGCCCTTGTGGCTCTTGGTACACTCACTGGTGGTGATATGTGGGAAGCAGTACAGAACTGTTATGAAATGTTTGACAAAGGAGGGTATTTTTATAACAAGGTCATGAATGATCTGGGTCAGCTTAAGCCAAATCAACATTGTACTTTATATTCCTTTCCAAACAAGGTGTTTGCTTACAATGCTGAAAAAGATCGGTTGGACCTTTGTCTTGGTAAACGGCACATCCAAGTGCAACCACTGGACGACGAAACATTATTGCAGGCTCACTCTCGTTCAAGTCAAGCACCTGTAGAGGAAACGAGCAGCAGCAGTGGTACGGGTGGGAAGGGTCTGTTTAGCGAGGCAAGCTTCAGTGGCGCCATTGCACCAAGAGATACATCCCATGCTCGGATGGCATTTTCAGGCCAGGGACGGACTCTTGCTGGTGCGCAATCAGCTCAGAAACAAACTGCTGAGACATCTCCATCAAGGATCCTACTGACCGATCCCCGATCTTCTCAGACAAACACCTCTAGCTCTACTACTGTGTTGGAACAACAGCAACCGCGACCCGGGCAAGGGGAGAATGTTAAAGATGtggaagaagaaacaaatctGCCTTCAGAGGCCATGGACACCCAGGGAGATGtggaaaaggaggaaaatatGCAAGAAATGCTTGTGGAGAGTCCTGCTGCAGCGCAGGATGCTATTGATGTGGATCAGCCACAAGTAGAACAAGAAAGCACTACACAGCTTAGGAGTGATGGAAGGGTCGAAACAGTAGAGGTGAGCATGGCTTTACCGAAAACAGATGAAGTGAGCGGAACGGTAGAGGAAGCGGAAATGACGCGCGTGACAGCTGATGAAACAGAGGTGATGCGCGTTACAGACcaggaaaacgaaaatatgGAAACAAATCAAGATGTAAGTCACATTGAAAGCAACCAAAGTAAGATTAAGAGTAATGTTGATGGTGTCAATACTCTTACTAATGAATTAGCAAACATTTCGGGGCAAGGAGACGACTCTAAACGTACAGAACCAGTTTCTGAATCGATGGAAACTGATCAGCTTAACccagaaaaatattgcatgaCTAACGAAGGCATGACAGCTACGTCAGATGAAGCGCAAGGCGAGGAGGAAATCAGAGGTTCAGAGCAAGATGACGTAACAGTTGATCCCATGAGTCCTGAGCCTAGTGACGTCACAATGGTGCGTGTATCTGTTGCCACAGAGATCGAGGCACCAACAGAAAATAGTGGCACAAGGTTTGTATCAACACATGATGTGACGGAAGGTGATACACCTCCGGTTGCTCAGGAATCGGAAGTTTCGCCGTTTATTATTGCGTCAAATCAACAAGCAGATGTTATGCAAAGTGGAAAATCAGTCGTAATGAACAGTGAAACAGCTGCTGGAAAAGATGGTGTTAAAGCTTCAATACAAGAGGAAAAATCTTCCAATGATCAAGGAGTGGCTGCTGAACTTGCAGCAGATACTAATGTAGAAAAGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21403 all species →	OTU1_UBXL	OTU1, UBXL domain	Domain	Interproscan
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan
PF19437 all species →	VCIP135_N	VCIP135 N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR045827 all species →	Domain	Deubiquitinating protein VCPIP1, N-terminal	Interproscan
IPR048857 all species →	Domain	OTU1, Ubl domain	Interproscan
IPR039087 all species →	Family	Deubiquitinating protein VCPIP1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14843 all species →	DEUBIQUITINATING PROTEIN VCIP135	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016320 all species →	Biological Process	endoplasmic reticulum membrane fusion	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0035871 all species →	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0071108 all species →	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0090168 all species →	Biological Process	Golgi reassembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11861	VCPIP1, VCIP135; deubiquitinating protein VCIP135	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.