Gene detail

Detailed information of RMX50534.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1939:44980...50500
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00008743

ATGAGGCGCAGTGTTCGCTTAGCAGCCAGAGCCATCGAAGAAGTTGTATCTCAAAATAATAAAGCTCTGCAAACTTCAGGACAGGCAATCACAATAAACTTGAAGGAAAAAGAGGGAAATTATTCAAGGAAGGAAACGTCGAGTAAGAGTGAGACCCGAAAATCTAAGGCAAGAAAACGGGCTCGAGCAAAAAGTTCCACGGAACAAGACCACAATGAAAAGAAAGGAGGTTACCTGATAAAATCAGTAGCGGCTGAGGAAAAGGTCAAGCCAGAAATTAAACGAGTGAAAACAGAGCCTGGCATACATGCGACCATCAAGTCTGAAGACAAACTCAACTTCCAACCTCTCCATGAAAAGCTGATAGGAGCACATGTCTCTATCAGTGGTGGACTGCATAACGCTGTATCTGAAGCTCTAGCTATTGGTGCTAAGGCATTTGGAATGTTTTTAAGGTCACAGCGTCAGTGGATGAGTAAACCTCTTCAGGACAAAGATGCAGAGCTATTTAAAGAGGCTTGCTCGAAAGCCAACTTCTCGCCGCATTCTATTCTCCCACATGGTATATATTTAATGAACTGTGGCTCTCCAGACGAGGAAACTCTCTCCAAGAGCCGTGCCACTCTGGTGGACGAACTGAAACGCTGTGAAAGGCTAGGTCTATGCCTTTATAATTTCCATCCTGGCTCTACGTGTGGCAAGATTACAGTGGAAGAATCCGTAGGCAGAATAGCAGAAAGTATTAATCAGGCGCACGCAGAAACAAAATATGTTGTTACCGTCTTAGAAAACATGAGCTGCCAAGGAAATACTATTGGTGGTAAATTTGAAGAGCTGCGAGGTATCATTGACCAGGTCCAGGACAAGTCTCGTGTAGGGGTGTGTCTGGACACATGTCATGCCTTTGCTGCTGGGTATGACATTGCATCAGAGAGAGGCTTTGAAATAATGATGGATGAATTTGAGACAATCGTTGGTCTCAAATACCTGCGAGGTGTTCATCTAAATGACTCCAAGGGAGATCTGGGATGCCACTTAGATAGGCATGAAAATATTGGCAAAGGGAAGATTGGGGTTGAGGCATTTAGGCGTGTGATGAGAGACCCTCGTTTTAATGGTATCCCAATGATTTTGGAAACACCATATGTTTCTGAAAATATTTATCAAAAGGAGATAAAGCAGCTGTATGCTATGATTTACCTTCAGGTTCGTGGCAAAAAGGTGAAAAAAAAAAAACTTGGAATATTGAAAACTGGTCTCCATCTAAACAGTATGTCCGTTACAGAAGTTGTTCTCGGGGTAATTTTCTCCATCCTTGTGGTCGTAAACCTGGTTGGAAACACTTTGGTTTGCCTTGTTGTGTTCCAGAACAAATCCTTGAGAGTGCCAATGAACTACCTTTTGGTAAATCTTGCTATTGCTGACATGTCTTTTGCCGTTTTTGTATCCCCACAGTATATTGTCCGTCCATTTTTTCATCATCCTGAGCCTCCGGTCGGTGACTTTCTTTGCAAGGTAGCTACTGGTGGGAGCTTGAGTTGGGTGGGAACAGCGGCTTCCGTCTTCACTTTGGTGCTAATTGCCTCCGACCGCTACTACTCAGTTTTGTTTCCATACGGAAAAAAAGGTCGTATGACGCCTCTGAGAGTAAAACTTGGAATTGTAACCAGTTGGCTGATTGCTGTGATATCTGAGATCCCTGCGATACTAGTGATGAAGTACGACACAGACCGAAAAATCTGTCTTGAAGATTGGCCCAATATTGGCTTTGCCAGAGCATACACCTTAGCGACTCTGTTCTTCGACTTCATACTGCCGTTTACTTTCATGGCTTCCGTGTACAGCAAAGTGATTTATCGCTTGTGGCGTGGCAGTAACCACGCTGGAACTCATTTAGCATTGCTTAAACGAAGGAAAAAAGTCACGAAGCTCTTACTAATTATCACAGCTTTACACGGAGTGTGTTTGTTTCCTGACACTGTCACTTATGTCCTCTCGTACTTTGGCTTCCAATATGGCTCCATCGCTTACAAGGTCGGCACTGTTTTGGTTTGCGTGAACTCTACAGTGAACCCATTTTTGTACAGTCTTCAGAGTGAACGCTTCAGAAGGTCCTTGAGGCAGCTACTGCAATGTTGCGAAAAATGTCTTGTCGTAAGATGCTGGGAGAGAAGGGATGTAATTGTTGTAAATGATATTCAAATGCGAGGGTAA

Transcript

rna-pdam_00008743

ATGAGGCGCAGTGTTCGCTTAGCAGCCAGAGCCATCGAAGAAGTTGTATCTCAAAATAATAAAGCTCTGCAAACTTCAGGACAGGCAATCACAATAaacttgaaggaaaaagaggGAAATTATTCAAGGAAGGAAACGTCGAGTAAGAGTGAGACCCGAAAATCTAAGGCAAGAAAACGGGCTCGAGCAAAAAGTTCCACGGAACAAGAccacaatgaaaagaaaggaggTTACCTGATAAAATCAGTAGCGGCTGAGGAAAAGGTCAAGCCAGAAATTAAACGAGTGAAAACAGAGCCTGGCATACATGCGACCATCAAGTCTGAAGACAAACTCAACTTCCAACCTCTCCATGAAAAGCTGATAGGAGCACATGTCTCTATCAGTGGTGGACTGCATAACGCTGTATCTGAAGCTCTAGCTATTGGTGCTAAGGCATTTGGAATGTTTTTAAGGTCACAGCGTCAGTGGATGAGTAAACCTCTTCAGGACAAAGATGCAGAGCTATTTAAAGAGGCTTGCTCGAAAGCCAACTTCTCGCCGCATTCTATTCTCCCACATGGTATATATTTAATGAACTGTGGCTCTCCAGACGAGGAAACTCTCTCCAAGAGCCGTGCCACTCTGGTGGACGAACTGAAACGCTGTGAAAGGCTAGGTCTATGCCTTTATAATTTCCATCCTGGCTCTACGTGTGGCAAGATTACAGTGGAAGAATCCGTAGGCAGAATAGCAGAAAGTATTAATCAGGCGCACgcagaaacaaaatatgttgTTACCGTCTTAGAAAACATGAGCTGCCAAGGAAATACTATTGGTGGTAAATTTGAAGAGCTGCGAGGTATCATTGACCAGGTCCAGGACAAGTCTCGTGTAGGGGTGTGTCTGGACACATGTCATGCCTTTGCTGCTGGGTATGACATTGCATCAGAGAGAGGCTTTGAAATAATGATGGATGAATTTGAGACAATCGTTGGTCTCAAATACCTGCGAGGTGTTCATCTAAATGACTCCAAGGGAGATCTGGGATGCCACTTAGATAGGCATGAAAATATTGGCAAAGGGAAGATTGGGGTTGAGGCATTTAGGCGTGTGATGAGAGACCCTCGTTTTAATGGTATCCCAATGATTTTGGAAACACCATatgtttctgaaaatatttatcaaaaggAGATAAAGCAGCTGTATGCTATGATTTACCTTCAGGTTCGTGgcaaaaaggtgaaaaaaaaaaaacttggaatATTGAAAACTGGTCTCCATCTAAACAGTATGTCCGTTACAGAAGTTGTTCTCGGGGTAATTTTCTCCATCCTTGTGGTCGTAAACCTGGTTGGAAACACTTTGGTTTGCCTTGTTGTGTTCCAGAACAAATCCTTGAGAGTGCCAATGAACTACCTTTTGGTAAATCTTGCTATTGCTGACATGTCTTTTGCCGTTTTTGTATCCCCACAGTATATTGTCCGtccattttttcatcatcCTGAGCCTCCGGTCGGTGACTTTCTTTGCAAGGTAGCTACTGGTGGGAGCTTGAGTTGGGTGGGAACAGCGGCTTCCGTCTTCACTTTGGTGCTAATTGCCTCCGACCGCTACTACTCAGTTTTGTTTCCATACGGAAAAAAAGGTCGTATGACGCCTCTGAGAGTAAAACTTGGAATTGTAACCAGTTGGCTGATTGCTGTGATATCTGAGATCCCTGCGATACTAGTGATGAAGTACGACACAGACCGAAAAATCTGTCTTGAAGATTGGCCCAATATTGGCTTTGCCAGAGCATACACCTTAGCGACTCTGTTCTTCGACTTCATACTGCCGTTTACTTTCATGGCTTCCGTGTACAGCAAAGTGATTTATCGCTTGTGGCGTGGCAGTAACCACGCTGGAACTCATTTAGCATTGCTtaaacgaaggaaaaaagtcACGAAGCTCTTACTAATTATCACAGCTTTACACGGAGTGTGTTTGTTTCCTGACACTGTCACTTATGTCCTCTCGTACTTTGGCTTCCAATATGGCTCCATCGCTTACAAGGTCGGCACTGTTTTGGTTTGCGTGAACTCTACAGTGAACCCATTTTTGTACAGTCTTCAGAGTGAACGCTTCAGAAGGTCCTTGAGGCAGCTACTGCAATGTTGCGAAAAATGTCTTGTCGTAAGATGCTGGGAGAGAAGGGATGTAATTGTTGTAAATGATATTCAAATGCGAGGGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01261 all species →	AP_endonuc_2	Xylose isomerase-like TIM barrel	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018246 all species →	Binding_site	AP endonuclease 2, zinc binding site	Interproscan
IPR001719 all species →	Family	AP endonuclease 2	Interproscan
IPR013022 all species →	Domain	Xylose isomerase-like, TIM barrel domain	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR036237 all species →	Homologous_superfamily	Xylose isomerase-like superfamily	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21445 all species →	ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX50534.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.