Gene detail

Detailed information of RMX50704.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1910:132671...144486
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00013210

GGGCTTTCTCGGTCGTCTCTCAGAAATGGAGAAATGGCGGTCTTTGAAAACCGGAAACCGTccctggaaacaaaaattgttcgtCCACGTGGTTCAATCAAGATGGCGGCACGTGAATGTGGAGAGTTAGCAATTCTGAGTGTTTCTGATAAGCAAGGACTTGTAGAGTTTGCCAAAAAGCTTGATGGATTAGGATTTAAGTTAATTGCATCTGGAGGAACAGCAAATAAAATCCGTGCTGCTGGTATTGCTGTCAGGGATGTGTCAGATGTGACAGGTGCTCCTGAGATGTTAGGGGGTAGGGTTAAAACCCTCCATCCTGCTATACATGGAGGGATTCTTGCTAGAGTAACTGAAGGAGACAAATCAGACATGGAAAAGCAAAGTTATGAGTATATCAGACTTGTGGTGTGTAATTTGTATCCTTTTGTAAACACTGTGGCAAAGGAAGAATGTACTGTGGAAGATGCAGTGGAGGAGATTGACATTGGTGGTGTTACTCTTTTAAGAGCTGCTGCTAAAAATCATGCTCGTGTCACAGTCGTTTGTGATCCTGCTGACTATAATAGGGTAGTGGACGAATTAACCTCAAGTGATTACCATGACACCTTGCCAAGCACAAGGAAAATGCTTGCCTTAAAGGCTTTCAGCCACACTGCAAATTATGATAAAGCCATTTCAGACTACTTCAGAAAACAGTATGGTACTGGAGTGTCACACATTCCTTTACGTTATGGAATGAACCCCCATCAAAAACCAGCACAGCTGTTCACCTCAGAAACCAAACTTCCAGTCAATGTCCTCAATGGCTCTCCTGGGTTTATAAACCTCTGTGATGCTCTAAATTCATGGCAACTGGTCCAAGAATTACGCCAATCCCTGAACTTGCCAGCTGCAGCATCATTTAAACATGTAAGCCCAGCTGGGGCAGCTGTTGGGGTGAAACTTACAACAGAGCAGGCAAAGCTTTGCATGGTGGAAGATATGATTGACAGCTTGACACTACTAGCCACAGCTTATGCCAGAGCCAGAGGAGCAGACAGGATGTCATCCTTTGGTGACTGGGTGGCGCTTTCTGACATCTGTGATCTCCCTACAGCAAAAATTATATCTAGAGAAGTCTCAGATGGTATCATTGCCCCAGGGTATGAGCCAGATGCACTAGATgtattaaagaagaaaaaaggagggAAATACTGTGTGCTTGAAATGGATCCTGCATTCCAGCCCCAAGAACTAGAGACCAGAACCATATATGGACTTCAACTTGAACAACTAAGAAATAATGCCAAGATTGATGAGAACGTCTTTAGAAACATTAAAACCAAGAGGCAAGATTTACCTGAGACTGCTTTACGAGACCTAATTGTGGCCAGTATTGCCTTGAAGTACACACAGTCTAATTCAGTTTGTTATGCCAGGGATGGTCAGGTTATTGGCATTGGTGCGGGACAGCAGTCTCGCATCCACTGTACCAGGTTGGCAGGAGACAAAGCAAACAACTGGTGGCTGCGTCAACATCCAAGAGTTCTTGAtatggtttttaaaaagggAGTTAAAAGAGCTGAGATGTCAAATGCCATTGACGTTTATGTCAATGGTACAGTTGGGCAGGATACTGACAAAGAAACATGGGAAGGGATGTTTGAAACTCCACCAGCACTTCTCACTGCGGCTGACAGACAAGAGTGGATTGCTACCCTTAAGGGCGTCTCCTTAAGTTCAGATGCTTTCTTTCCATTTAGGGACAACATTGATAGAGCCCACCTGAGTGGCGTGGAATTCATAGCGAGCCCAGCAGGATCTGTAGCTGACGATATTTGCGTCAAGGCAGCTGATGAACATAACATGACAATGGCTCTCACTGATGTGAGACTCTTTCACCACTGATACTAACTGGAGAAGAGTTATTGTGACAAAGCTTGCAACTTACACTTTACCTTAAAAATGGATTATAACTGTTGAGCGTTGTTTAATTGTAAACAGTGCAACGCTTAAACTTAGcgttaaaaagtaaattatccCTTGTTCTAGTGTGTCGCTTGTTCGTGGACTTTGGCGTGTTGATTTCCTCTCAACTATATAAGCACGAGaggatttgtttaatttgtatcAGGTCATATTaagcgaaaagaaaagaaatgtgttttagCAAggtaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02142 all species →	MGS	MGS-like domain	Domain	Interproscan
PF01808 all species →	AICARFT_IMPCHas	AICARFT/IMPCHase bienzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR002695 all species →	Family	Bifunctional purine biosynthesis protein PurH-like	Interproscan
IPR024051 all species →	Homologous_superfamily	AICAR transformylase, duplicated domain superfamily	Interproscan
IPR016193 all species →	Homologous_superfamily	Cytidine deaminase-like	Interproscan
IPR024050 all species →	Homologous_superfamily	AICAR transformylase, insert domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11692 all species →	BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003937 all species →	Molecular Function	IMP cyclohydrolase activity	Interproscan
GO:0004643 all species →	Molecular Function	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006189 all species →	Biological Process	'de novo' IMP biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00602	purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase	EC:2.1.2.3 EC:3.5.4.10	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.