Gene detail

Detailed information of RMX50816.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1897:196044...205566
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00003154

ATGGCTATTCCAGTACAACCTCAACCAGTTCAACAGCCGAAATCTTGGGAACTTAGTTTATATGAGCTTCATCGCACACCACAAGAAGCCATTACTGATGGAACAGAGATTTCAATTTCACCTCGCAGCCTACACAGTGAACTGATGTGTCCTATATGCTTGGACATGCTAAAAAATACAATGACCACCAAAGAGTGCCTACACAGATTTTGCCAAGAATGTATTATCACTGCTCTGAGAAGTGGGAACAAAGAATGCCCCACATGTAGAAAAAAGTTGATTTCAAAACGCTCCTTACGGCCAGATCCTAATTTTGATGCTCTCATTGCTAAGATTTACCCAGACAGAGATGAATATGAAGCACATCAGGAAAAAGTTTTACAGAGATTGAACAAACATCATAACCAACAAGCTTTGACAAGCAGCATTGAAGAGGGACTTAAACTGCAAGCAATCAATAGAGCGCAAAGAGTGAGAAAAAGATCATCGGATGACCCATCACCAGTGGCAGGATCAGGAGCCCCTGGAACACCAGGTCCCACAGGCCAACCAGCTGCTGGAGAAGGAGGTAGTAATGTGGTGCGAAAACGACAGAAGACCTCATCAGATCCTGAGTCAGATGCAAGTGAAAATACCTTAGACTCCACTGGAGAAGCTGCCACAGAAACATCAGAGCCTGTTAATGAAATTGAATTGGTGTTTAAACCTCATCCCAAGGATCATGACCCAGAGACAGTGGCCCAGCAAACACGCTACATAAAAACTACAGCTAATGCCTCAGTCGATCATCTTGCCAAGTACCTCGCAATGAGACTTGCCCTTGAGTCACAACAGGAAGATGGAGGTGCTAACCCTACTGAGGAGAGCAGTGAAGCCACACAGTTCACAATATACATTGCTAGCATGCCAGGGCAATACACACCTCTTCCTGGATCAATGATATTGGATTTTGTGAATGAGAAGTACTGGAAAGTCAACAAGCCATTGGAGATGTACTATGCCTTGAACAAACCACAGAGCCCTTTTTGCAAATCACTTCCGGTATCTCAAGCCCCTCCTCCAAAATCCTGTCAACAACCGGAACTGCGTCAAACACGTGTTGAAGGAAATCAAGAGAATCCAGGCATGTTTTGGGCAACTTTGGAGCTGTTGAGCAACTACTTGCCCGAGATCGGACTAACTGGTGTTTACGCAGTTGCTATATTGACCTTCATTGGATTTTGTTCCGATCGAATACGGCAAAGGAAGAACCAACAAAACGCCATTGACTCCGATTATCAAATTGGAAGGCGTCTTGGATTGTTTGAAAGCATGATTGATGACCTTCATAGCTATGGTGGAGGTTTGCAATCTGTTGTTCTTTTGCTGAAGTCCAAAGTCTCTCTTCAACAGACCATGGTTCGGCAAACATTGGAACGTTTGCCAAGGAAACACACCATTCTTCGTATGCGAGTCAGAGAAGTTGCTGTGCACGGGAGAACGAAGGCAGTGAAATGTTTTATTGAGATGGATGAACCGTATGCTATAGATTTCTACATCAAAAGTAAACAGGCTCGTAATTGGGAATCGTCTTTTGAAAAGGAACTCTCGACTCCATTCCAGATCTCTGACGGTCCTTTGTGGAGAGCACGATCGTTCAAAGAGGAATATGATGCAAAAGAGAGGTGTTTCTTGAACACCTTGCTGTTTTCAGTTCATCAGCTCATCGCAGACGATACTGCTTTGTTGAATCTTTGTGGAGATTTCTTAGATTTCTTGAACATGGAGAGTGGCAAGGTTGACAATGACATCAAAACAACAAGTGTTCCTCTATACCCACCTATTTCTGATCTTTTAAAGCATCACATTACCTTAACTCAACTGGATAAAGTTCTGCTTTCTCTTAAGCCCATCTTCACTCGACTGTTGTATAAGATAGTTGGAAAGCCAAGGAATCAGTTCACTGCAGTGATTCCACCAACTAGCTTATGTGATCCAACCATTTTAAGGAAAACTTGTATTCTGCCAAGAAATTTACCCAAATGTTCCATTTCTGAGCTGGTAGAGAAATGTAAAGAGAACAAATGTACTGTACATGGAATGCTTACAGCTGCAGCAAGTGTTGCCATAGCAACCATGTTACAGAATGGTGACCTGCGAATACCAATGTCTATTCCTTTGAGTTTTAGTGTGAATGTGAGACAGGAATGCCAGCCTCCAATATCAAGCAAAGATCTGGGTTGTTTTACATTAGACTGTGGGCTTAAAATCCCTGTGCCAGTTCTGCAAGACATACATGAGCATTTTTGGAAATTTGCACAGAAATGTACTCAACAGGTACGGCAAGCAGTTGCAAGCGGAAAACACCATGCATGTTTGAAGGAACTTCATTTATTGGACATTGACTTTGCCAAAAAAATGTACAAAGTCTCTAAAAACAAGAAAACAGCAGGTCGTTTGAATAGGCTATGCCATGTTTCTAATCTTGGAAAACAAACCTTTGGAAAAGAAGGTGAAACGAAGGCTTATGAGTGTAATGGAGTGTATTTTGCTGGTGCAGGGCATAATTTTGGCCCTGTGTTTAGCAACAACTTAGTGACCATTGATGGTCAATTGTTTTGGAGTATTATATATTACAGTAATGTTGTCACTCAGGATGTGGCCACTGAATATGCTGAACTTGTTTTCAAGACTCTAAAAGATGTTGTATAA

Transcript

rna-pdam_00003154

tttttccttttagatCTAACATTCAGTAGTTCCGCTATTTGGATACTTTCATCTTTCTTGAATTTACTCCTTTAGATCGCGTTTGTTAAGGAAGAAGTGTCGGTAATGGCTATTCCAGTACAACCTCAACCAGTTCAACAGCCGAAATCTTGGGAACTTAGTTTATATGAGCTTCATCGCACACCACAAGAAGCCATTACTGATGGAACAGAGATTTCAATTTCACCTCGCAGCCTACACAGTGAACTGATGTGTCCTATATGCTTGGACATGCTAAAAAATACAATGACCACCAAAGAGTGCCTACACAGATTTTGCCAAGAATGTATTATCACTGCTCTGAGAAGTGGGAACAAAGAATGCCCCACATGtagaaaaaagttgatttcaaAACGCTCCTTACGGCCAGATCCTAATTTTGATGCTCTCATTGCTAAGATTTACCCAGACAGAGATGAATATGAAGCACATCAGGAAAAAGTTTTACAGAGATTGAACAAACATCATAACCAACAAGCTTTGACAAGCAGCATTGAAGAGGGACTTAAACTGCAAGCAATCAATAGAGCGCAAAGAGTGagaaaaagatCATCGGATGACCCATCACCAGTGGCAGGATCAGGAGCCCCTGGAACACCAGGTCCCACAGGCCAACCAGCTGCTGGAGAAGGAGGTAGTAATGTGGTGCGAAAACGACAGAAGACCTCATCAGATCCTGAGTCAGATGCAAGTGAAAATACCTTAGACTCCACTGGAGAAGCTGCCACAGAAACATCAGAGCCTGTTAATGAAATTGAATTGGTGTTTAAACCTCATCCCAAGGATCATGACCCAGAGACAGTGGCCCAGCAAACACGCTACATAAAAACTACAGCTAATGCCTCAGTCGATCATCTTGCCAAGTACCTCGCAATGAGACTTGCCCTTGAGTCACAACAGGAAGATGGAGGTGCTAACCCTACTGAGGAGAGCAGTGAAGCCACACAGTTCACAATATACATTGCTAGCATGCCAGGGCAATACACACCTCTTCCTGGATCAATGATATTGGATTTTGTGAATGAGAAGTACTGGAAAGTCAACAAGCCATTGGAGATGTACTATGCCTTGAACAAACCACAGAGCCCTTTTTGCAAATCACTTCCGGTATCTCAAGCCCCTCCTCCAAAATCCTGTCAACAACCGGAACTGCGTCAAACACGTGTTGAAGGAAATCAAGAGAATCCAGGCATGTTTTGGGCAACTTTGGAGCTGTTGAGCAACTACTTGCCCGAGATCGGACTAACTGGTGTTTACGCAGTTGCTATATTGACCTTCATTGGATTTTGTTCCGATCGAATACGGCAAAGGAAGAACCAACAAAACGCCATTGACTCCGATTATCAAATTGGAAGGCGTCTTGGATTGTTTGAAAGCATGATTGATGACCTTCATAGCTATGGTGGAGGTTTGCAATCTGTTGTTCTTTTGCTGAAGTCCAAAGTCTCTCTTCAACAGACCATGGTTCGGCAAACATTGGAACGTTTGCCAAGGAAACACACCATTCTTCGTATGCGAGTCAGAGAAGTTGCTGTGCACGGGAGAACGAAGGcagtgaaatgttttattgagATGGATGAACCGTATGCTATAGATTTCTACATCAAAAGTAAACAGGCTCGTAATTGGGAATCGTCTTTTGAAAAGGAACTCTCGACTCCATTCCAGATCTCTGACGGTCCTTTGTGGAGAGCACGATCGTTCAAAGAGGAATATGATGCAAAAGAGAGGTGTTTCTTGAACACCTTGCTGTTTTCAGTTCATCAGCTCATCGCAGACGATACTGCTTTGTTGAATCTTTGTGGAGATTTCTTAGATTTCTTGAACATGGAGAGTGGCAAGGTTGACAATGACATCAAAACAACAAGTGTTCCTCTATACCCACCTATTTCTGATCTTTTAAAGCATCACATTACCTTAACTCAACTGGATAAAGTTCTGCTTTCTCTTAAGCCCATCTTCACTCGACTGTTGTATAAGATAGTTGGAAAGCCAAGGAATCAGTTCACTGCAGTGATTCCACCAACTAGCTTATGTGATCCAACcattttaaggaaaacttGTATTCTGCCAAGAAATTTACCCAAATGTTCCATTTCTGAGCTGGtagagaaatgtaaagagaacaaatGTACTGTACATGGAATGCTTACAGCTGCAGCAAGTGTTGCCATAGCAACCATGTTACAGAATGGTGACCTGCGAATACCAATGTCTATTCCTTTGAGTTTTAGTGTGAATGTGAGACAGGAATGCCAGCCTCCAATATCAAGCAAAGATCTGGGTTGTTTTACATTAGACTGTGGGCTTAAAATCCCTGTGCCAGTTCTGCAAGACATACATGAgcatttttggaaatttgcaCAGAAATGTACTCAACAGGTACGGCAAGCAGTTGCAAGCGGAAAACACCATGCATGTTTGAAGGAACTTCATTTATTGGACATTgactttgccaaaaaaatgtacaaagtctctaaaaacaagaaaacagcaGGTCGTTTGAATAGGCTATGCCATGTTTCTAATCTtggaaaacaaacctttggaAAAGAAGGTGAAACGAAGGCTTATGAGTGTAATGGAGTGTATTTTGCTGGTGCAGGGCATAATTTTGGCCCTGTGTTTAGCAACAACTTAGTGACCATTGATGGTCAATTGTTTTGGAGTATTATATATTACAGTAATGTTGTCACTCAGGATGTGGCCACTGAATATGCTGAACTTGTTTTCAAGACTCTAAAAGATGTTGTATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD\|RAWUL · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16911 all species →	PapA_C	Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus	Family	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF16207 all species →	RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR031641 all species →	Domain	Phthiocerol/phthiodiolone dimycocerosyl transferase, C-terminal	Interproscan
IPR043540 all species →	Family	E3 ubiquitin-protein ligase RING1/RING2	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR032443 all species →	Domain	RAWUL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46076 all species →	E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0031519 all species →	Cellular Component	PcG protein complex	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX50816.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.