Gene detail

Detailed information of RMX50842.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1897:22325...34915
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00003138

ATGCTTGTTCCTATTTTTACCCTCAAACTGGGCCATAAGATTCATCCTCGAACAGCAGCGTTAGGTCGTTACGATGGAAGACATCCATGTCTGACAGCAGGCACAACTGCTGGAAAGGTTTTTATCCACAATCCCCACAGTGGCACCCTTCAGGGAGGCAGAGCAATTGCAAGTCATGATACCGACATTAGTATTTTAAACATCAACCAACAAGTTTCTGCTGTTGCAGCTGGTCCCTTGAACACCTCTGGATGTGACACGCTTCTTGTTGGTACACCCACAAACTTCTTAGCCTATGATGTGGAGAACAATTCTGACCTGTTCTATAAAGATATTGCAGATGGAGCCAATGCAATTGTAACAGGCAGACTTGGATCTTTTGAAAATCCTTTGGCGATAGTGGGTGGAAACTGTTCAATTCAAGGATTTGACTTTGAAGGCAATGACGAATTCTGGACAGTGACAGGAGACAATGTGTGCTCCTTGGCAATGTGTGATTTTAACAGTGATGGATTGGCAGAGTTACTTGTTGGCTCAGAGGATTTTGACATCCGAGTTTTTAAAGAAGATGAAATTATCGCAGAAATGACTGAAACTGAGTCTGTAACCTCTCTATGTCCAATCCGAGGATCTCGATTTGGTTATGCTTTGGGAAATGGTACTGTGGGAGTTTATGACAAGACAGCAAGATACTGGAGAATAAAGTCAAAAAACCAAGCAATCACCATTCACAGTTTTGATCTTGATTCTGATGGAGTGCCAGAGCTCATCACTGGTTGGTCCAATGGAAAGATTGATGCTCGTAGTGACAGAACAGGGGAGGTGGTGTTTAAAGATAACTTCTCTGCTGCCATTGCTGGTATACTTGAAGGAGACTATCGTATGGATGGAAAAGTGGAACTCATTTGTTGTTCAGCAGAGGGGGAAGTTCGTGGGTACTTGCCAGCATCTGCTGAAATGAAGGGCAACTTGATGGATGTCAATGTTGAACAAGATGCACTACGAGACTTGGCACAAAGAAAACAGAATTTATTGTTGGAATTGAAAAACTATGAAGAAAATGCTAAGGTTGGAAAGGTTGGAGGTCAAGAGGTTGATCAATCACAGATGGGAGTCATACCAGCCAGCACTCAACTGCAGACCTCACTGTTGGTAAACCCAGGAAGTGAACAAGTTCAGCCACATGTGCAGCTCTCAATTTCAACTACCAATGAAACTATTATCCGGACTGTGATGATATTTGCTGAAGGAGTGTTTGAGGGGGAAAGTCATGTTGTCCATCCCTCACAACAAAATTTAAAGTCATCTCTTCAAGTTCCAGTGTTCCCACCCAAAGATATTCCTGTTGATCTTCACATCAAAGCTTTTGTTGGCCAGAAATCCAGCAACCACTTCCATGTTTTTGAGCTTACAAGACAGCTACCTAGATTCACCCTGTACATACCTTGCCCAGATGGTTATGCTGAACCAAAATCCAGCTGCTGCTTCCATATTAATGAAAGAGTGAACAGGGCTGTTATGTGGCTAAATCAGAATTTTCTCCTCCCGGATGAGATAGAGAGTAAAGACGGGGACCTTGACATAATGTTCTTGTCTCTGAGAACTGGTAACCCCTTGGCAATCAAAATGGATCAAAGTGGAAATGTGAGTGTCAAAACAGATGACATGGATTTAGCAGGTGATATCATTCAGGCACTCGCAACCTTCCTGGGAATTGAGGACTTACAGACCGCTGCAGAATTTCCTGAGCATTTGGAAGAACTACGTGCGGTGTTGCTTAAGGTAGACGAGCTGCATGCTGTGAGACAAAAACTGACAGCTGAGATGGCAGATCACTCCAATTTGATCAGAAGCTTGGTTGTCAGAGCTGAAGATGCCAGATTAATGGGAGACATGAAAAACATGAGAAAAGGCTACATGGAACTGTATGACCTGAACAGAGATTTAATCAATGGCTACAAGATCAGATGTAATAATCACACAGAGCTTCTGTCCTGTCTAAAACTTGTCAATCAGGCCATCCAACGAGCTGGAAAGCTCAGAGTGGGCAAAGCTAAATCTCAAGTTATTGCAGGCTGCCGACAAGCGATCAAGAACAACAATGTCAACGGCTTGTTCAAGATAATCAAAGCTGGTTCCCTATGA

Transcript

rna-pdam_00003138

ATGCTTGTTCCTATTTTTACCCTCAAACTGGGCCATAAGATTCATCCTCGAACAGCAGCGTTAGGTCGTTACGATGGAAGACATCCATGTCTGACAGCAGGCACAACTGCTGGAAAGGTTTTTATCCACAATCCCCACAGTGGCACCCTTCAGGGAGGCAGAGCAATTGCAAGTCATGATACCGACATTAGTATTTTAAACATCAACCAACAAGTTTCTGCTGTTGCAGCTGGTCCCTTGAACACCTCTGGATGTGACACGCTTCTTGTTGGTACACCCACAAACTTCTTAGCCTATGATGTGGAGAACAATTCTGACCTGTTCTATAAAGATatTGCAGATGGAGCCAATGCAATTGTAACAGGCAGACTTGGATCTTTTGAAAATCCTTTGGCGATAGTGGGTGGAAACTGTTCAATTCAAGGATTTGACTTTGAAGGCAATGACGAATTCTGGACAGTGACAGGAGACAATGTGTGCTCCTTGGCAATGTGTGATTTTAACAGTGATGGATTGGCAGAGTTACTTGTTGGCTCAGAGGATTTTGACATCCgagtttttaaagaagatgAAATTATCGCAGAAATGACTGAAACTGAGTCTGTAACCTCTCTATGTCCAATCCGAGGATCTCGATTTGGTTATGCTTTGGGAAATGGTACTGTGGGAGTTTATGACAAGACAGCAAGATACTGGAGAATAAAGtcaaaaaaCCAAGCAATCACCATTCACAGTTTTGATCTTGATTCTGATGGAGTGCCAGAGCTCATCACTGGTTGGTCCAATGGAAAGATTGATGCTCGTAGTGACAGAACAGGGGAGGTGGTGTTTAAAGATAACTTCTCTGCTGCCATTGCTGGTATACTTGAAGGAGACTATCGTATGGATGGAAAAGTGGAACTCATTTGTTGTTCAGCAGAGGGGGAAGTTCGTGGGTACTTGCCAGCATCTGCTGAAATGAAGGGCAACTTGATGGATGTCAATGTTGAACAAGATGCACTACGAGACTTggcacaaagaaaacagaatttatTGTTGGAATTGAAAAACTATGAAGAAAATGCTAAgGTTGGAAAGGTTGGAGGTCAAGAGGTTGATCAATCACAGATGGGAGTCATACCAGCCAGCACTCAACTGCAGACCTCACTGTTGGTAAACCCAGGAAGTGAACAAGTTCAGCCACATGTGCAGCTCTCAATTTCAACTACCAATGAAACTATTATCCGGACTGTGATGATATTTGCTGAAGGAGTGTTTGAGGGGGAAAGTCATGTTGTCCATCCctcacaacaaaatttaaagtcatCTCTTCAAGTTCCAGTGTTCCCACCCAAAGATATTCCTGTTGATCTTCACATCAAAGCTTTTGTTGGCCAGAAATCCAGCAACCACTTCCATGTTTTTGAGCTTACAAGACAGCTACCTAGATTCACCCTGTACATACCTTGCCCAGATGGTTATGCTGAACCAAAATCCAGCTGCTGCTTCCATATTAATGAAAGAGTGAACAGGGCTGTTATGTGGCTAAATCAGAATTTTCTCCTCCCGGATGAGATAGAGAGTAAAGACGGGGACCTTGACATAATGTTCTTGTCTCTGAGAACTGGTAACCCCTTGGCAATCAAAATGGATCAAAGTGGAAATGTGAGTGTCAAAACAGATGACATGGATTTAGCAGGTGATATCATTCAGGCACTCGCAACCTTCCTGGGAATTGAGGACTTACAGACCGCTGCAGAATTTCCTGAGCATTTGGAAGAACTACGTGCGGTGTTGCTTAAGGTAGACGAGCTGCATGCTGTGAGACAAAAACTGACAGCTGAGATGGCAGATCACTCCAATTTGATCAGAAGCTTGGTTGTCAGAGCTGAAGATGCCAGATTAATGGGAGACATGAAAAACATGAGAAAAGGCTACATGGAACTGTATGACCTGAACAGAGATTTAATCAATGGCTACAAGATCAGATGTAATAATCACACAGAGCTTCTGTCCTGTCTAAAACTTGTCAATCAGGCCATCCAACGAGCTGGAAAGCTCAGAGtGGGCAAAGCTAAATCTCAAGTTATTGCAGGCTGCCGACAAGCGATCAAGAACAACAATGTCAACGGCTTGTTCAAGATAATCAAAGCTGGTTCCCTATGAAGTCTCACCGTCACAGTTCCTAAAGCATTTATTAAACTTCAGAGGCCGgttttttaaatgacttttGAATCCGGCTGCGGTGTAGACAATCGGCAGTCCCGTGAGCTCTTTGCATGTGGGTTGTTGGAATGAAATGCGTGTTTTCCAGTGTTCATTAGAACCGTCCTTGACATTGCTTTAACAAAATCAACGTTTAGATTCAACGTTTGCCTTTAAATTTTGCCCATTGAAAGTTGTTCTTAAGGTTATGTTAGATGgccttcaaaaaattaattaatttatgaagaaGAGGTAAATTGTACttgccctacgggctcgtgcaattttgttgtctttgaaagatttccttgtacttattaacaccaaattgcactcgaaattaTGTCATTATCTATTCTTAGTACTGAGTGCGTCTGCTTTACAGGCTACATTATTTTAAAGGTGCGCCCACAGAAGTGGTGTAACCAGCTGGTTAAAAGCCTTTGATGCTGAATCTTTAGGCAGTCTCGAGAGAAATGAGAATGAAATTGtggattaatttttccttcgttCGCTGCTCCGCAGCCTTCATCTTCTTTGAGTGCCCACATTGTAAATAGTAGCAAGGCACAAGGAATGCTTATTCAGTAAAGGCTgtaagatttgaaaaattgatcaaatttcAATGGTGGCTTGTGTTTAGGGT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14783 all species →	BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	Repeat	Interproscan
PF14781 all species →	BBS2_N	Ciliary BBSome complex subunit 2, N-terminal	Repeat	Interproscan
PF14782 all species →	BBS2_C	Ciliary BBSome complex subunit 2, C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016616 all species →	Family	Bardet-Biedl syndrome 2 protein	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR029429 all species →	Domain	Ciliary BBSome complex subunit 2, middle region	Interproscan
IPR029430 all species →	Domain	Ciliary BBSome complex subunit 2, N-terminal	Interproscan
IPR029333 all species →	Domain	Ciliary BBSome complex subunit 2, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32465 all species →	BARDET-BIEDL SYNDROME 2 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034464 all species →	Cellular Component	BBSome	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16747	BBS2; Bardet-Biedl syndrome 2 protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.