Gene detail

Detailed information of RMX50856.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1891:140829...148349
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00017254

CTCAGTATCAACAACATTCGTCATCGTCGAGTTGGCTGCCATATTGTTTAGATTTGGAGGAGTACTTTTTCGGGAAAATCACCGTGGATTTTTAGACTTCCCTCCCCTGTGTGGTCCATGATTAGTAATGGCGAAATCAAAGTCAGAACAAGTGCTGAGGCTTGAACCAACTTCAGAACTACGCTTTCGGGACGTGAGTCAAGTACAGCTTATGTTTAACTATGCATTCACCTGGTCAATTTTACGTCTAGGAAATTTCACCGAAGTCGTCACAGCAAACCTTAAACTCACAAACCCCTCCGAAAAGAAGGtctgttttaaagtaaaaactaCGGCTCCAAAGCGATACTGTGTTCGCCCGAACAGTGGATTTGTCGAAGCTGGTGGGGTGGTGGAAGTGGCCGTGATGCTACAGCCATTTGAGTATGACCCCAAGGAAAAAAGCAAGCACAAGTTCATGGTGCAGACGATGTTTGCTCCCGAAGGAGATGCAGATCATGAAACTTTGtgGAAAGAGGCTGACCAGAGTCAATTTATGGATTCTAAACTGAAATGTGTCTTTGAGTATGTAGATGATGGGGAAGGCAATGCGGAGACTTCTGTAGGAGGAAATGAAAATGAGGTTGCAAACAAAGAGCAGCTCAAGGTTCACAAGACAGAGACTATGGCTGAGTTCGAGACCCCAGCCCCTAGTTCTACTAACATTCCAGGTAGCCCTTATAAGGAGCAAGGAGTGGAGGTTACAACATCAACAAGATCATTGCAGGGTGTGGATGAAGGAAGAGGCTACAGCGATGAGTTAGAAAggctgagaaaagaaaacagtgatcTTAGGGCTGAAATGGATCAAGTTCGGTACAGGAAGAATGTGGCTTCCCAGTCTTCCGCAACAACACAGGGTTCATCGCCCAAGGTATCTACACTCCTTGCACCAGACGACAGCGTCAATTTACCGCCATCGGTTATTGCCTACATCGTCTTAGCCTTGATATTCGGTGTCGTCATTGGCAAATTTATCCTGTAAGAGACAGTGGATctcgaaaatattttaacgCGTTATAGAGCAAAATGAACAGACGAAAAAGTTACCATCATGAAACAGATTTCAAGTGTTTAAATATGCAGTTGACACTGTAACGCACagagaaattttacttttaaaagttctAGTGGTAAATTAAGTCGTTGAACGAAACATCTGAtcaataattactttttcGCTTTCCCCAAATCTCACAATTTGATCTCCCGTCTCTCTTGTACCATTTGAAGGCATTTACTAGCTACAGAAACAGTGAGTAAAGAATATAGAATTGAAGAATGTCTCGTCACGGCTTTaccttattttaaaagaaatattcagtGTCCCTGAGTACGTGCATGGCAAAACACTGATCGATCATTACAGGGGAGGGTATCTTTTGACGCTTGATTAATTGGATTGTGTCATGCCAgttaaattaactttgtttaAGGTTTTGCTAATAACTCGCCATAAAATTGAACGTTGGCAGGAAATTGACATATTTATAACGTATGAACATTCTTAAATAGCGTCACTTTCGCTGGTTTAAGAACAGGCtgaatagttttaaaatgccTCCGGggtgagaaatatttttttttaatcttggtCATTTGCTTgcatcctttttttctttcgtaatTGCTTTGTGTGTTGATCGTTTTCACGATGTTAAGGAGGttatttttcaagcttttatTTACTTAGCTAAATTCTGTGACAGAAGTTCATGTTCAGCAAACCCCCTAAGAACTTTCGTTTTCTCCATAGAGACAACCCATTCCGCGTTTTCAATGCTTGCAATGAAATTCAGAGTAACGTCCATTACTAAAACATCTTCGGACGCTGCAATCTTTTTTACACGCTACTCGCAACATACTCCGTGATAGATATTTGGAAAAGTGGGCAGCCTATCTGTGCACGTTTGTAAgcaaaatgaatcaaaaacaGGAGACTCTCTTGTTGTTAACTTCCGCGGAACGACTAGTGGTCTAGTCTATTGCATGATTGTCTATTTGGGCGGCGCCGTAATAAACTACCATGCGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00635 all species →	Motile_Sperm	MSP (Major sperm protein) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000535 all species →	Domain	Major sperm protein (MSP) domain	Interproscan
IPR016763 all species →	Family	Vesicle-associated membrane-protein-associated protein	Interproscan
IPR008962 all species →	Homologous_superfamily	PapD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10809 all species →	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0033149 all species →	Molecular Function	FFAT motif binding	Interproscan
GO:0061817 all species →	Biological Process	endoplasmic reticulum-plasma membrane tethering	Interproscan
GO:0090158 all species →	Biological Process	endoplasmic reticulum membrane organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX50856.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.