Gene detail

Detailed information of RMX51008.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1869:250044...261894
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00013927

atgACAAAACGAGCAATTGTAACGCGGGAGCGAACTAGTTCCATTACACGCAGGATTTtatgaaaggaaaggaaatagAAGCAGTCGCTTCCTTATGACTACTTAGAAACCTTTCCAGAGTTGATGTCGCAATCAATGAGTTAGGTTTCCACTTGATTCACTGAAATCGTCGACGCTATACGCGTTTTATCTGCGAAAATGTGGCTGTGAAACTCATGGAATATAAAGTGCGAAGTTTCCTAGAGTATGAGTTTACAGAAACATCGAAGCAAAGGCCGTGGAGGCAGTGGCAGggGTCAAAAGAGTTACAGACCAGGTTCCAGTGCAAGTCCTCCACCTCCGACGCTTAACTTTGCCAATtctgaCAATGGGCATACCACAGACATCTTTGCAAACAAGTTCATGGTTTACTATGTTATCAGCAACTTGGGTGAGACAGCTCGTGTTCAGGTTCAGAATGGTGATATTTATGAAGGAGTCCTCAAAGCCTTCGACTGTTCCTTAGGCGAAGCTCATCTTGTGcagcaaaagaaaagcaatggACTTGTTATGGAGgATGAACGAATGTTACCCAGCCGTGATGGTCTTATCAGCACTATTGTGATTGCTCTGAAAGATATTGTGAGTGTTAATATAACCAAAACAGAGGAACCGGAGATTGTCATCTCAGTTGGTAAGACTTCCTTTCAGAACATTTGTATGACTGAGTTACAGATATGATTAATGGGCTGAACCTTCAGAGATGGGTTCCAGATGGTCCTGACATTGGAGGAGGCTTGGAAGATAATGTGAAAgtgAATGGCTGGTCAGCAGATGAGATGTTCAAAACCAATGAGGAAAagtttggtgttaaatcaacaTACAATGAGGATTTGTTGGAGTACACAACACCACTTCCAAAGGATAGCACTGGTGAAATGGAGCTCAAAGCGGAACAAGCAGCTCGGGAAATTGAgcagTCCAGAGGGCACTTGCACCGGCAAGAAGTTGATAGTGGTAAAACTGAAGAGGAAATGTATGCAGCTGTTGTGAGACCTCAAACCACAAGTGCAGATCCAAGAACCCCTCAGGTGTCTCCTGAACAGTCTTCTGTAGAAGGAAAGCCGCAAAGAGAAGCTGCTCCTGAAACAACTCAATCATCAGATGAGAGAAAAGCTACAGACACGGACACACCAGCAGTACAGGAAAATGCCAAACCTGCAAGTGCTGTTACTGTGAACAGTGAAAACACTGTGACACACTCCTCTGGTGGTCAAAGCTTAAAGGAATTGTCCATCGTAGGACAAACAGCTTCTACGGACACTCAGGCCTCTGGTTCCAAAGCAAACCATTCTGAAGTTGTGAAAGATCTGAAAGAGTTTCATTCCAACTTCAATCTAAAAGAAAAGTCTTCCAAGAAGGCAAAAGATGTGCAGCAAACAGTTCCTCCAGAGGCAGATCAGGCTGAGGCTACAGTGACTAAGACCACTACATCCTCTGTCAATgAATCAGGGACGCCATCTTCTCCAGATGTGGCCAAatcagaagagaaaaaagatggAGAAGCCAGCATTCTGTCTACTTCAAAGCTAAATCCACTTGCTAAAGAATTCAAATTCACTCCCAAGGCTCAAaAGTCAACTCCACCTCCACAACAATACATATCAGTGGGCCCACCACCTTTCTCACCAACTTCCATCAGAGCTCCAGTGGCAGGAGGTCCTttccctccccacccccaACCAATGATGGTGGTACCTCAACTCTACAGAAGCAAACAGCCATTCAATAAACCTGCACGAAGCCAGTCATATGGAGGTGGCCGTGACCAAGGGGAATCACCGCCTACCTTCTTATCGGCAGCTGCTGCAACTGGCAGCCCAATTATCACACCAGGAGGTGGATTTCCTCAGCAAATGTACGGTCCAATTCCACCACAGCCTGTCACTTACGTCCAGCCACATGCAGGAATGGTGCCACAGCCAATGTTACCACAGtttGTTGTTCCTCCAGGACACGGTCCAGCACGATTTATTGCTCCTGTGTCATCACCAGCAGGGGCAGGTACTGTTCCAATGACACAGACATACCAGGATGGCACACCTGTCCCAGTTTAtgttgctgGTGCACCCATGCAAAGTGCAGGCACCCCTCAAGGTCAGCCGCAGCCTAGCCCTTCACAGTCAGGTCAGTTTGTCTTCAGCTCCCCGATGCCAGGACAGCCTCAGGTTGGCGCACCCCCTCAGGGACAAGTTACACCTGGCCCTGCCCCATATGTTTACATTCCTTCAGTGGCACCTAATGCTGTGCCCACTTCTACTCCGTCGTCAGTATCCTACATGCCTGGCCCTTTCCATAATGACAGGATACAGTGACgagaaataaaaacgaaaagaagaaaaaaaattgaagctcCTTTTGACTGCAGTCTAGCAGTCTATACTTTCACTGTGTTATTGAAAAGAAGTCCCAGCAACAGGAAGGAGGGATCCACAGATGCCCCTGTCTgttgtatttaaaacaaatttgttgcaaaagcaaataaagtatttgttggaataaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14438 all species →	SM-ATX	Ataxin 2 SM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025852 all species →	Domain	Ataxin 2, SM domain	Interproscan
IPR045117 all species →	Family	Ataxin2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12854 all species →	ATAXIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0034063 all species →	Biological Process	stress granule assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX51008.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.