Gene detail

Detailed information of RMX51123.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1821:94721...106213
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00020555

tcctaactaacattacaagaattgtatgacaaacagtaagaattacaaatgagatcttgggaattaaagggttaacacagATGTTTACATAATAGGTATATTTGCacacattttcattaaaaaataatgaaaggcATTGTTATCccatgaaaattgtaaaattaactACTATTGTGACAATCATCTCTGTTGAAGtagtatctttttttcaactacCTAGAAAAATATCATCGTGGTTATTGTTATAGTGTAGTAAATAGTAACatcttaattaaataaaaaaaaaagggaaaacttacAAAACAGTCTCATCAATATCATCAAATAAtatcaaccaaaaaataaatattgagcTACTAAAATGTGTATTTCCTTTGTCTGATAGACAGCATTATTATctataattgtttttcagtatttatctttgcaaagtaaaaaattgtggaGTTTAGGCTTTTATGTTTAGCCATATCTATTTCTTCCATCCACATTGaccataaaaattttcattacttaaACTAATAACTTGAAGTGAGAATATCTTTTGTTAGTTAACGTAGAGAGCAGGTTGGCTCATGATTTGAGAGAGTCTAGTTTATGTTATTATCATCACACAGGAAGTGTATCTGCTGAATGTTCTTCCATGAATTTTCTGAAGTTCTCATTCTCTAGTTCAGTCATCACCTTATTTAAGGCATAAATCTGTGGAAATGAGGAAGACaacatatttcatttaaatttatatattcTATAGTTCATATCAAGATTGAAGCAGCCATCCATTGTTCTGAAACTTCTTCAAATGTTGAAAGAAGCCCACACCAAATTATGGCATTCTAAAATTAAGGTTCTTCAACAGCAACAAAGGTTATGGATACGTTCTGGGCCGTGAAAGAGCAAAGgacaacatgaaaaattgaaactcttGAGCTGACTTTTTCCACTGGTTTGGCTTCTTTCCAAGGCAAATAATCAGAGCACAATTATTGATGTAGACAGGGGTTATTGCATGATAACTGTCTCTGATTTTCTAAAAAGTTTCCAatagaaagaaaggaaatttaattatGAATGGGTTAAAATAACAGTTACCATGTTTCCCATCTTTTGAAACTCATTCATGATTGATCTGTCATTCAAGTGGTTGTTCACTTACCTATTGTTATCAGTCTTGTTTTAACTACTCTTTGACTCtggaataacaaaaacaaaagatacaaGTGTTCATTTTAGACAccatttaagaaaaaactacAACATATAACATGGGTTCTGGTATTGGACAACTTTGACCTAATattaaatgtaatttgtaatgaagtgaaattgtttgtctcacaatTTAGTCACTTTGTGATGGATTGCGACACTTCATACTGCAGTCTTTTACAGGCACTTAGCCACATTTACATTGGAATTGACAACCTTGTAAGGCCAACAATTGTACATCTTTGAAAGTACATTTGCCATGATTGCtgttttcaaccttttttagCAATATAAATATAGCTGATATGCATTTAAAGAATGCTATTAGTTAATACAGAAATTTACCTTTACATCTGACAGTGAAGGAATATATTCCACTTTCTTTAATTCATCTAAAACACAACAAGACAACAGATGCTAATAGATTATAAAAGATTCAAccaccatttttaaattaattaagtgCCCAACCTCAATCAAATGTCCATCCTGTGGGTGTAAATAAGTGTCAAGGGTCAAATAAGCCCACACCCTCAGGATCCAAGAATTAATGAGGGCATGGGGCGCTTAACTGAGTAAATACAGACATTGGTACTtacacttttgttttaaaaatcagcACCCAGCTAAATTCACTTGATTATTTGGTAACCAATTGAATGGTTAAATAACTGATTGAGTGACCGGTTGAATGTCAGATCAATTAGTtgcaaaaattaagatttgtttttagttttatccTCATGCTATTGTACtatcattcatttgttttagtttggaTTAAATTACAGAAATGGAGTCGTGTGCTTATAATGCGCATGCAGTCAGAACAAGTAATAATACACTCAATCAGCTGTGCCATAGATGCCACTTTTCCATTCTTGCCACATTTGACATTAACTGTTACTGAGGAGAAGCATTGAAAATTGGAATGCATTTGTTAAAAGATAAggagtagccaatcagattagAGAACTTTTGATAGTACACTGTCTAGTAGAATTATGATactaaatattatttaatacTTGCCAGCTGAAGGTGTGCATGGTGGAGCACATGGTACTCCTGTTATCATTCCAGAGTGTGCTTCAGATAAGTAGATCTTCTTCACTCTATTATCTTCAGAGTTCCATAATTTCCGTGGTGAtgacaaaggagaaaataaagaggtattttccatttcttgttgttgtttccttgGAGAAAGCGTGCTTGAACTTGATGTATTAGGTAAATTGGTGTTGGGTACTTTAGGCAAAAGGATTCTGTCACCAGTGTTCTTTTCACTAGAATTACTCTTGTTGCCTTTCTTTGGTGCATAAGTTGCATGAAGTTTTTGTATGCTCAAGTATTTTGCGGAATTGTCTTTTGATTGGTGAGAATTTGTCCTCGTTATTTCTTCTCTGGAATTTAATTGAAGACCTGGGtgcttcttttgtttatttgggTTGGCAAGTCTGGTAAATAATCCAAACCCTCctgaacctttttttaatgagttctttcttttcctggGTGATTTTGATTTGCTCCACTTTTTTctacttcttttgtttgtcttttcacATACGCTCTCCTCattctgtttgattttcatctcaaCAGCATTAGCATCTTGTTTAATATTCTCCACTACAGCAAAGTCACAAGtatcattgtttttctcatCTACCACAGGATCACTGTTATTTAGTTTCCTTTCTATCagttgaaagttttcattgtctttgatttgcttttcatgattgtcttcattttctttgatttttacagctGCTGTTCTTAATGGCAGTAGTTCTTTTTCATCCTGATTGATTTTACTATCACCTGAAATCGATAATATCCATTAATTCTTGATACCATGTAACTTCTTCTGTCAGTATCAAaacatcatccagcaaataGGTGACGAGAATCCTaaaatgtatcaggtagaagttgttatgtTGATCTAACAGTAAATTCTCctaaccaatttacaagacAATGTGAAGCAGGCAGAGGGGAGGATTAACAAGGGGATCATGGGAGTTGCAGGTTAACAGAGCTGCTTAAACTTCAAGTATCAATATATTTGTGATAATCAGCTCAGTCATGAAGTAGGATAGTCAACACCCTGATAAACGTGAAAAgactaaattctcataactggCATTTGAAGCAACGAATGGCGGTTAGTTGGGATATCTGTTAATTCAATCATTACCGGTAGTAAGATCAAATGCAATAAGTTGTACTTTGGCagcaaaataaacttgttttccTTACCAAATGGTTCGTCCTGTGAGTTTATACGGCGTTCTGTAGCAGATGAAATTAAACTACCTCGCCTGGAAGAAATCGCGTGACAGTTGCAAATATTATCAGGCGAAGTGCAACAACTTTGTTTATGCGCGCGGAATACTGACttgatttgcatattttgcGGTGCACCATTTTCTACTTCAACAACCTCAACTCTCTCCGGCAAGAACTCCTTGCATTCGGTCCTTCTACTGCAGTTACTACGTACAGACGATGCTGAGCTATTCCTTCTTTGATTTCTACTTCGCAAAAGACGGATGATAGGACTGGAAATCGCCGATGGACTTGCTCCACATCTGACATCAACAATTGGAGGTTTGATGATTGTCAAGGGGAAATCGCCAGATATTGTCCGTCCTGTTGGCATCCTGGGCAAAATAGCTGTTGTACTTTCTAGAGGAATCATGATACCATCCGccaatgtttttaaacttgcgttgtttgatttaaagtGTCGcgattaattaattttccacaAATCGCCAAAAGTCAGCTCGGAGCTATAGTCACTGTTTTGGAATTTGAGGAACTTTAAACATCGTTGCTATGGGGACTTCATGTAACCTGGCTTTTGGTTTAACCGCTGACCAATCTACTttcacgaaaaaaagaaagaaaactagaTATCCACGTGAATATCCGTGCAAGAAATAAACAGTTTGGAATGAGGCCTTTAACAGAGGAAGAAACCCAAAGTGTGTTTGAAAAGCTGGCAAAATAtATTGGGGATAATATAAAACTTCTCATCGACAGACCAGAtagaaattattgttttagaTTGCATGATGACCGAGTCTACTATGTAAGtgaagAAATCATGAGAAAAGCCACAAATATAGCCAGAGAAAACCTAATAAGTATTGGAACATGTATTGGGAAGTTtacaaagacaagaaaattcaGACTTCACATTACAGCACTTGATTTCATGGCACCATATGCCAAGTCTAAAATCTGGATGAAGCCAGCAGGAGAGCAGTCTTTTCTCTATGGGAATCACCTTTTGAAGTCTGGCCTTGGGAGGATAACAGAAAACACACCACAGTACCAAGGAGTTATTGTATACTCTATGAATGACCTTCCACTggtttttgGTGCCACGTCTCGTTCAACACAAGATTGTCGCCAAGCAAATCCTACAGATATCGTGTGTTTCCATCAAGCTGGTTTTGGGGAATACTTGAGATCTGAGGACactttgacataa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03657 all species →	UPF0113	UPF0113 PUA domain	Domain	Interproscan
PF17833 all species →	UPF0113_N	UPF0113 Pre-PUA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005155 all species →	Domain	UPF0113, PUA domain	Interproscan
IPR016686 all species →	Family	Ribosome biogenesis factor, NIP7	Interproscan
IPR040598 all species →	Domain	60S ribosome subunit biogenesis protein NIP7, pre-PUA domain	Interproscan
IPR036974 all species →	Homologous_superfamily	PUA domain superfamily	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR002478 all species →	Domain	PUA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23415 all species →	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042255 all species →	Biological Process	ribosome assembly	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07565	NIP7; 60S ribosome subunit biogenesis protein NIP7	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.