Gene detail

Detailed information of RMX51236.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1812:72624...79879
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004042

ATTATTGAGTATGAAAATCGAATCAGACAATACAGCACTCCAGACAAGGTTTTCAGATACTTTGCAACACTAAAAGTTGTGCATATTGGTGAGGACAATGATGTGTTCATGACACCTGAGGATTTTGTGAGATCATTGACCCCAGGAAAAATACAACCTGCTGGATTGGGACTTGATGAACATGAAAGATTTAATCCTGAGAAACACAAGTATAAAGGAGAGCTTTCTGAACACTTGGGCCAGGACAGTGTTTTCCTGAGGATGGGAGAACATGGGCTTATTTCGTTCTCTGactatatttttcttctaacaGTGTTATCATTACCTCCCAGAATGTTTGAAATTGCATTccaaatgtttgatttaaatggAGATGGGGAAGTTTCACCGGAGGAATTTGAAAAGgTTCAGAATATCCTTTTTAGCATGACTCAAACTGGGATGCGGCATCGTGATCATGTAGTGACAGGCAGTGTTCTATCTGCTCATGTGAACAGTGGTATCAAAGAATACTTCTTTGGAAAAGATTTGAAGAAGAGGCTAACTGTGCAAAGATTTATagagtttcaaaagaatttacaACAAGAAGTCATGTATCTAGAGTTCAATTCCTATGACCCTGAGAATGGCTGCATTAAAGAATGGGAGTTTGCAGACATGCTTCTTACTTACTCTAGTTTCCATGAAAAGAAGAAGGTGAAAATTCTGaggaaagtaaagaaatattttaaagaaaatcctCAGggAATAACATTCAAAGATTACTTGGCATTCTTCAGCTTCATGAGAAACATTTCTGAAGCAGATATGGCTTTGAGTTTTCATAATGCAGCAGGCAAAGCTATTGATCCAGcAACATTCAAGCAAGTTGCGAAGACAGTGACAGATGTTAATTTGAGTGATAATGTGGTTGATGTTGTATACAAGATGTTTGATGAAAATGATGATGGAGTTCTTAGTCACAGAGAATTTATTGTTGTGATGAAGAATCAACTTGTCAGAGGGTTAGAAAATGTGAGAAAGATGGAATGTAGCCACTAGTaattacaatattattatcatactCCTTttaactgaataattttttcccttttaggACAACAGAACTTACATCCATGTTgtcctttaatttttcctttcaataaaacattagaataattgtaaatttacagaactttttacatttttgactACTGTGCCACATGGTAGCCcttctttcattgtttttgttcaggCAACAAATGAGCCCATGGAATATAAGCAATTGAAAGTAACCTCTGCAAGTCTCAGAAAACCATGAAGACTTTGGCTTGATTATGACTAGGTAGAGAGAATGCCTTCATTGTAAGTGCTGCAAGATGCACATTTGGGCAGGAGTCTGGCTCCACATTATCACTGCTAGACTCTTTGCAGACCTATCACCAGCTTTTGCTGCTCAATGCCTCATACTTTTCTGTAGGCAAAGAAACACTCATGATCAAGCACTATTAATGAGGGCCTGCTTTCAGGCTAGATTCTGACAGGGCAATTGTGTAAAGAtcgataaaaattaattttagggAACATAGGTAAGCACCAAAACCATTAAGTAACTACTGTTATCTCATACCTGACTGGCTTTTTCCTTGCAGTCTAGAAACGTTTCAGAAATATTCCTGGTGTTAACAGTTTTCTGAGTTTCATATTAAACTAAAGTTAACTTGCTAAAAGTTTCACAAACAATCtgataaagcaaaaaaacaagcagATAAAGGGTGTAGTTATAGACCTCTCTTGTAAATGGTTGGCCAAATTGCTATTCTTCTGTTATCATGTACACCAGCTTCACTAGCTTTTCTGGCCTCTACAacatataaaaattaaaacaaaataatcgaCAATCAAGAGTGTGGCCAAGAAGGCTTATTTTTGTGCACATCAAAGAATAATAATCATGCTGGTCATCATGAATGAGTTCAATAGAAtatgtgaaattttggaacaacTTCTTGTTGAGGCTAATGCTGtctctttgcttttgattttcagcCAAAGGATACAGGTTTTAGTAGACTGATGCAGGCCATTTGGCACTGTGGAAAACACTTTGCATATACCACTCTGCATGGTAAGAAACAATCTGCTGAGGACTAGATGATAATCATGTTGAACTCAAAGATCAGAATGAACACAGTGCCAGGAAAATTGATTTGTTGCTTGTCAGTGATTTAATGGAAGGAGCGAGGTCCATGTACTAGCTTGCAACAATAGTGTACATTAGCTGTCATCTTCAAATGTTCATAAACAGTTGTCTTCGGAGAACGGACTGAATGTGATCAGTGGgtatgaaaaatgcaaatgattgTGAATTCCAAGTATTGACCATTATGGCTAGTAACTTGCACATGGCACTGGGAATTTGCCTGTTTGTTTCATGTACAAATGTAACTGTGAAATTGTTTGTCAGTCAGAAAAAGATGTGAATTTGAgcaaactttacaaaaaagtacaaattttgtatttagtgTAGTTCTTTGATTGTACATTGACTTGAATTAACTTGAAATAGCTTGTGGGTTTCAGGAAAGAGTGAATTGTTTGTAAATCAGAAAAATGTGTGgatttaaataaactttacaaaacagtacaaattttgtatttagtgAATTTCTCTGATTGTACAATTACTTGAATTAACTTGAAATAGCT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR039800 all species →	Family	Calcium uptake protein 1/2/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12294 all species →	EF HAND DOMAIN FAMILY A1,A2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0006851 all species →	Biological Process	mitochondrial calcium ion transmembrane transport	Interproscan
GO:0036444 all species →	Biological Process	calcium import into the mitochondrion	Interproscan
GO:0051560 all species →	Biological Process	mitochondrial calcium ion homeostasis	Interproscan
GO:1990246 all species →	Cellular Component	uniplex complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX51236.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.