Gene detail

Detailed information of RMX51247.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1812:384206...402225
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00004078

ATGCCGCTTTTAGGGAAGAAATCTTACAAGCCAAGCCCGTTTCCGAATGATCTGAAGTCTGAGGAAGAGGTTTTTGTCATCAAAGAGACGAATGAAGTCTTCAGGTCTGAATATGTAAACCGTATCCTTTTGTATGGATTTCAAATCTGGAGCTGTCAGTTTACCGGTAAAACAAACCTGAAGTATGAAGAAGCTGTAGCAAGTGAAGAACAGGCACTGAAAAGACTAGAGAGCTTTCCAAAGTATTTTGAGAAAACAGTTTTGCAGATTGTGCATCACAGTACAAGAACACTGCAAACTCTGGTACAAGAGTGTTACAAACAACTGGAAAAAGAATTTTCGCCAAATGAACCAGTAGAGTGTTTGAGCACTGATAAAACATATGACTTTGAATCTGGTGAGATACATGACTGCTTGAAGAGCATTCCACCGGAGGAAATCAGACGTGTTAAGAAAATCCCGTCAGAAGAGTTGCTTAAATGCTTCATATGTGTCAACACCCAAAACCCTTGGAGGAGTGATAACAGCCCTTGGGTGGTTAAGAGCGATATGGCAAAGAAGTATTCCCTTGCTGAAAAATATAATGATTTCTCTTTGGTATTGGGCAAGAAAACAACACCTTTGTCTAAAACTCCCTCAAAAGGCCACAAGAGCAACAAGAAACAAAAAAAGGAGAAAACTTCTGACAAGAACACATCACAAGGGAAGTCCCAAGTGAAGAAGACTGGCTTTATGCAGAAAAAACTTGACTCCTTTAGAACAAGCAGTAATGGCAAAGATATCACTGTGAGCCTGGCAAAGATGTCTGACAAGTCGCATAAAAAGGTAACACCATCAAAGAAGAACTTCATCGACATTTGTTCAAGTCCTGATAAAGATAATGACAAGACACCATCTAGTCAACTGCATGGTACTCCAATTAAATGCAGATTGGTTCTAACACCTATCAAATCACCTCAAGTTACAGCTGCAAAGAGTATCACTCCTGAAAGAAGTGTTGTAAGTAAAGACAACATAAACATGAAAAATATGGCTGTTGGAGAAACTGCAAATGATGTTGTCATCACAGGTTGTAAAACATCACAGACATTTTTCTCTCAGCCAAGTAAAAAAGTCAGGAGTTCTCCTAAACAGGACAAATGTGAAAAGTCCCGAGATGGTAAAGGGGTGTTGAACAAGAAATCAACAAAGAAAGGAAACATTTCAAAAAAATTATCAATAGTTAAAGGTACTAGCCTGAAGGAGAAGAGGCTTACTTATGGAATGGAATCAGTAAAAAAGAAGGCAAAACTAGATGTTTGTGTGCCAGAAGTGGAGTCAGTGATTGTGGACAATGATTCTGATAAGGATTTTCAATCCTCTTCTAACAAGATTCCAGCCAAATTGAAGCAATCAAGTGGAAAAATGAGACAAAGAACATTGTTGGACCTCACTAAGAAGCCTGAAGAAGAGAAGGTTGCATTCCTGTCTTCAAAGATGACAGCCAAAAAACAGAAAACTTTGGCTGAAATGTTTAGTGCTGCCTTCAGGAAGGAGAAACCAGACCAGGTGATAAATGCGTTAATTCGGAAAACAGCTAAAGTAGTGTCTTCACCAAGCTGTCTTGCTCTTGATCTTTCGACTCCTCAACGGGACCATAAATGTGAAGACAGTGATCTCATAGATGCTAAACCGCTCCCACCTTGTAAACCAGTGAACGTACCCATGGAAATCACAGCTGAGATGTTTGGTGATATAGCTATGATAGCAGACTTTGTGCATACCTTCTGTGATCTTCTTGCTCCTCGGGAAACTCTGCATATCTCTATTGATAATTTATCACAGGCTTTGGTATCTGGCAAAGAAGGCTTCCCTCTGCTTTCAAGAATCTTGGTTGTCTTCCTTCAGATTTTACTGCAAGATAGGTCAACCAAGATCCTGGTTACCCTGTGCCATGAGGTTTTGTCGTCAAATGCTGTTGATGATTACATAGGAAGTCAACTCACAGAGGCCACAGAATTAAGGAAACAAAAGCAAGCCAAGCAAAGGGAGAAGAATGATAAGATAAGAGAGGAAAAGGAGAGGCTGAGGAAAGAAAAACAGGAGATGGAAAAAAAGAAAGAAGAAGAAGCAAACAAAAAGCAACTCAAGGTGGATGAGCTAAGTATGAAAGAAACTGGAACAGAGTGTGTCACTTCAGAACCCCTTGGTTGTGGTCCAGAGATGGAGATATCCAACAAAATGGAGGAGAAGAGAGAAAAACAGAAAGGTGAAGTTTCCCTGAGAGCAGAACAGGACAGGCAGAGTTATGAAGTTGTTGAAACTTTGAGGAAAAGAAGAGAAGACATGGCTGCAAAAGACCTCATCAATGAGAAGAAACTAAAAGAGAAGGAGGAGAGACTTGCAAAAGAAGAAGAGGAACAGTTGAATCTGAACATGGCTCAGTGTCTGTATTCTTTGAGATTAAAACCCATAGGATGTGATCGCAACCATGGCCGTTATTGGGTGTTCAATGGTGTGGCACCAGGGGTTTTTGTAGAGTATGGTTGGAGAAATTTAGAGGATCTAGCAATACCCACTAAGGGTGTTTCTAAAGTGGAGAAAGAAGTTGGAGACACTGCAGATGCAACCATTGAAACAGAAAATAAGAGTGAACAGTGTGAAGAGGGAAGTGTCATTGAAATGGTAGAAGAGACTAAAGTTGAAAGAAAGATGGACTCTTGTGCTAAAGATAATGAGAAAGAATCAAGGTTGACTGATGTTCCATATGAATGGTCCTGCTACAGTACTGTTGAAGAAGTTCAGGCTTTGCTTTCCTGTTTGTCAAGTCAGGGTATCAGGGAAAGTGAGTTAAAGAAGACTCTCAAAGAAAAATTGCCAGAAATCACTGAAGGAATTGTTAAAAGAAATTCTTCAAAGAAAGTTTTAAACCCAGAGACTGGTGAAGAAGTCCCTTATAGCTCCATCAAAGAGGAATTGAAGGACACTGTTGAAAGACTCTTCTATGGAAATTTAGCAGAGCTTGAAAATGGCCTGGAGGAATATCTAGAGGGGGTAGACCAAGCCAAGACTGTCAGTGATTTGGCATTGCAGCTTGGAAAGTTGTTACATGCAGTGTTACCACGGTTCTATCGGGGAATGTTCCATTTGGACAACAAAGGATCTGAAGAAGCCAAACAAAGATGGTTAGATGCAGTCAATAAAGCAACAACAGTGTCTAGATGTCATCTGCTACTTGGAATATTGGCTTCTCTTGTGATATGGGATATGTCAGCAGAGCATGCGCGATGCAAGATTTGTGGGCGCAAAGATATTGGTAAGACGCTGATACTGTGTGACCATTGTAACCAAGGTTACCATCTGCATTGTTTACGGCCAGCGCTATCTAAAGCGCCCGAGGGAGACTGGAGCTGCCCTGTTTGTAAGCCAAATGAGAGGGTCAGCAGTCGGACAGGAACCAAGAATTACAAACAGGAAAGTGGAAGTGAGATTGAAGATTCAAAAGATGAGGCAAGTGAGGCCAGTTTGAATAGTTGCGATGAAAATGAAGATTACTGCTACACATGTGGAGAAGATGGTGACTTGATCTGCTGTGATACGTGCCCGCTGGTTTTCCATAAAACATGTCATCAGCCACCTCTTAGGAACATACCACGGGGTGCGTGGAGTTGTTGGTTCTGTCGCCAGCCAAAGGATCAGAAGAGTGTGAAAGTTCGTAAATCGGAGAAGTCCGTAAAAGCCAAAGGGAAGGCGAAAAAGCTTTTAAAGCGAATGGGAAGCTTTGTAAGAGAATCTGAGCAGAAGCAACCTCACATGCGAATCAAGACGGCGTCGAAGCGAATTTTTCAGAAGCATGCACGTGACGGAAGAAAAAGAGCGCGTGATGCACGTGCTAGAGCTGTTTCAAGAGCCCGTCCAAGTTTGGAGGACATTTCTGATGAAGAAAGCATCGATGGTCGAGGCAATCAGAAACCTAGAAGAGTGTCCAGAAGGCTTCAGAGGATGTACCAACAAGTTTCTGAAGATGAATTGGAAGAAAACAGCACAAGGGATACGAATGTAAAATCGTTTTATGGTAAGACCAACAGAAAAGTGAGCAAACGGGAAGTCTTCAGTGAGGAAGATGATGACTTGATAGAGGAAAGGGGAAGGAATGCCTGTAGGAAGACGCGTGCGCACAATAGGCCTCAGATTTCAGATGTTTCTGAAGATGAGGGAGACGATGACGAAGATTCCGGAAAGGAAAATCGCAAAATTAGTCCCTTTGCATCGTTTCAAAAGACTACATACAGATCCACGAGGAATCACCGAAAAGTTCCGAGCTCTTCCGAAGAATCTGATGAGAGTGGATACACTGAAGATTCTGAGGAGCTTAACAATGGCCGTCTTTCAAGGAAAAAAGGCAAAAAGAACGCGAAGAATTTATCTGTAAACAAAGCCGGACGAAAGGCAGCAAGGAAAACTAGAAGAACCGAAGAATCATCCGAGAATTCCAAACGACGACGTGCCAATGTTGAGATGGACACTTGTGAGCAAATTTTACGTGCACTTGTTCGTCACGAAGACAGCTGGCCGTTTACACAAGCGGTTAATGTTCGTGAGGTCCCAGACTACCTGGATCTTGTTTCAACCCCCATGGACCTGGGTACCATCAAAGGAAAACTGAATAGTTTAGAGTACCCGGATGTGGACAGCTTTGAAGCTGATGTTCGGCTTGTATTTTCAAACAGTGACAAGTACAACTTGAGCACTTCAGAGGTTGGACAAGCTGGCAAGAAACTGGAACAGTACTTTGACAAAATATTTGAAGAGAATTTCTCAAGCAAGGACAGGAAATCTAAAATCCATCGAAAACGATGA

Transcript

rna-pdam_00004078

ATGCCGCTTTTAGGGAAGAAATCTTACAAGCCAAGCCCGTTTCCGAATGATCTGAAGTCTGAGGAAGAGGTTTTTGTCATCAAAGAGACGAATGAAGTCTTCAGGTCTGAATATGTAAACCGTATCCTTTTGTATGGATTTCAAATCTGGAGCTGTCAGTTTACCGGTAAAACAAACCTGAAGTATGAAGAAGCTGTAGCAAGTGAAGAACAGGCACTGAAAAGACTAGAGAGCTTTCCAAAGTATTTTGAGAAAACAGTTTTGCAGATTGTGCATCACAGTACAAGAACACTGCAAACTCTGGTACAAGAGTGTTACAAACAACTGGAAAAAGAATTTTCGCCAAATGAACCAGTAGAGTGTTTGAGCACTGATAAAACATATGACTTTGAATCTGGTGAGATACATGACTGCTTGAAGAGCATTCCACCGGAGGAAATCAGacGTGTTAAGAAAATCCCGTCAGAAGAGTTGCTTAAATGCTTCATATGTGTCAACACCCAAAACCCTTGGAGGAGTGATAACAGCCCTTGGGTGGTTAAGAGCGATATGGCAAAGAAGTATTCCCttgctgaaaaatataatgattTCTCTTTGGTATTGGGCAAGaaaacaacACCTTTGTCTAAAACTCCCTCAAAAGGCCACAAGAgcaacaagaaacaaaaaaaggagaaaacttCTGACAAGAACACATCACAAGGGAAGTCCCAAGTGAAGAAGACTGGCTTTATGCAGAAAAAACTTGACTCCTTTAGAACAAGCAGTAATGGCAAAGATATCACTGTGAGCCTGGCAAAGATGTCTGACAAGTCGCATAAAAAGGTAACACCATCAAAGAAGAACTTCATCGACATTTGTTCAAGTCCTGATAAAGATAATGACAAGACACCATCTAGTCAACTGCATGGTACTCCAATTAAATGCAGATTGGTTCTAACACCTATCAAATCACCTCAAGTTACAGCTGCAAAGAGTATCACTCCTGAAAGAAGTGTTGTAAGTAAAGACAacataaacatgaaaaatatggCTGTTGGAGAAACTGCAAATGATGTTGTCATCACAGGTTGTAAAACATCACAGACATTTTTCTCTCAGCCAAGTAAAAAAGTCAGGAGTTCTCCTAAACAGGACAAATGTGAAAAGTCCCGAGATGGTAAAGGGGTGTTGAACAAGAAAtcaacaaagaaaggaaacatttcaaaaaaattatcaatagtTAAAGGTACTAGCCTGAAGGAGAAGAGGCTTACTTATGGAATGGAATCAGtaaaaaagaaggcaaaacTAGATGTTTGTGTGCCAGAAGTGGAGTCAGTGATTGTGGACAATGATTCTGATAAGGATTTTCAATCCTCTTCTAACAAGaTTCCAGCCAAATTGAAGCAATCAAGTGGAAAAATGAGACAAAGAACATTGTTGGACCTCACTAAGAAGCCTGAAGAAGAGAAGGTTGCATTCCTGTCTTCAAAGATGACAgccaaaaaacagaaaactttgGCTGAAATGTTTAGTGCTGCCTTCAGGAAGGAGAAACCAGACCAGGTGATAAATGCGTTAATTCGGAAAACAGCTAAAGTAGTGTCTTCACCAAGCTGTCTTGCTCTTGATCTTTCGACTCCTCAACGGGACCATaaATGTGAAGACAGTGATCTCATAGATGCTAAACCGCTCCCACCTTGTAAACCAGTGAACGTACCCATGGAAATCACAGCTGAGATGTTTGGTGATATAGCTATGATAGCAGACTTTGTGCATACCTTCTGTGATCTTCTTGCTCCTCGGGAAACTCTGCATATCTCTATTgaTAATTTATCACAGGCTTTGGTATCTGGCAAAGAAGGCTTCCCTCTGCTTTCAAGAATCTTGGTTGTCTTCCTTCAGATTTTACTGCAAGATAGGTCAACCAAGATCCTGGTTACCCTGTGCCATGAGGTTTTGTCGTCAAATGCTGTTGATGATTACATAGGAAGTCAACTCACAGAGGCCACAGAATTAAGgaaacaaaagcaagCCAAGCAAAGGGAGAAGAATGATAAGATAAGAGAGGAAAAGGAGAGgctgaggaaagaaaaacaggagatggaaaaaaagaaagaagaagaagcaaacaaaaagcAACTCAAGGTGGATGAGCTAAGTatgaaagaAACTGGAACAGAGTGTGTCACTTCAGAACCCCTTGGTTGTGGTCCAGAGATGGAGATATCCAACAAAATGGaggagaagagagaaaaacagaaaggtGAAGTTTCCCTGAGAGCAGAACAGGACAGGCAGAGTTATGAAGTTGTTGAAACTTTgaggaaaagaagagaagacaTGGCTGCAAAAGACCTCATCAATGAGAAGAAACTAAAAGAGAAGGAGGAGAGacttgcaaaagaagaagaggaacaGTTGAATCTGAACATGGCTCAGTGTCTGTATTCTTTGAGATTAAAACCCATAGGATGTGATCGCAACCATGGCCGTTATTGGGTGTTCAATGGTGTGGCACCAGGGGTTTTTGTAGAGTATGGTTGGAGAAATTTAGAGGATCTAGCAATACCCACTAAGGGTGTTTCTAAAGTGGAGAAAGAAGTTGGAGACACTGCAGATGCAACcattgaaacagaaaataagaGTGAACAGTGTGAAGAGGGAAGTGTCATTGAAATGGTAGAAGAGACTaaagttgaaagaaagatGGACTCTTGTGCTAAAGATAATGAGAAAGAATCAAGGTTGACTGATGTTCCATATGAATGGTCCTGCTACAGTACTGTTGAAGAAGTTCAGGCTTTGCTTTCCTGTTTGTCAAGTCAGGGTATCAGGGAAAGTGAGTTAAAGAAGactctcaaagaaaaattgccaGAAATCACTGAAGGAATTGTTAAAAGaaattcttcaaagaaagttttaaaccCAGAGACTGGTGAAGAAGTCCCTTATAGCTCCATCAAAGAGGAATTGAAGGACACTGTTGAAAGACTCTTCTATGGAAATTTAGCAGAGCTTGAAAATGGCCTGGAGGAATATCTAGAGGGGGTAGACCAAGCCAAGACTGTCAGTGATTTGGCATTGCAGCTTGGAAAGTTGTTACATGCAGTGTTACCACGGTTCTATCGGGGAATGTTCCATTTGGACAACAAAGGATCTGAAGAAGCCAAACAAAGATGGTTAGATGCAGTCAATAAAGCAACAACAGTGTCTAGATGTCATCTGCTACTTGGAATATTGGCTTCTCTTGTGATATGGGATATGTCAGCAGAGCATGCGCGATGCAAGATTTGTGGGCGCAAAGATATTGGTAAGACGCTGATACTGTGTGACCATTGTAACCAAGGTTACCATCTGCATTGTTTACGGCCAGCGCTATCTAAAGCGCCCGAGGGAGACTGGAGCTGCCCTGTTTGTAAGCCAAATGAGAGGGTCAGCAGTCGGACAGGAACCAAGAATTACAAACAGGAAAGTGGAAGTGAGATTGAAGATTCAAAAGATGAGGCAAGTGAGGCCAGTTTGAATAGTTgcgatgaaaatgaagattacTGCTACACATGTGGAGAAGATGGTGACTTGATCTGCTGTGATACGTGCCCGCTGGTTTTCCATAAAACATGTCATCAGCCACCTCTTAGGAACATACCACGGGGTGCGTGGAGTTGTTGGTTCTGTCGCCAGCCAAAGGATCAGAAGAGTGTGAAAGTTCGTAAATCGGAGAAGTCCGTAAAAGCCAAAGGGAAGGcgaaaaagcttttaaagcGAATGGGAAGCTTTGTAAGAGAATCTGAGCAGAAGCAACCTCACATGCGAATCAAGACGGCGTCGAAGCGAATTTTTCAGAAGCATGCACGTGACGGAAGAAAAAGAGCGCGTGATGCACGTGCTAGAGCTGTTTCAAGAGCCCGTCCAAGTTTGGAGGACATTTCTGATGAAGAAAGCATCGATGGTCGAGGCAATCAGAAACCTAGAAGAGTGTCCAGAAGGCTTCAGAGGATGTACCAACAAGTTTCTGAAGATGAATTGGAAGAAAACAGCACAAGGGATACGAATGTAAAATCGTTTTATGGTAAGACCAACAGAAAAGTGAGCAAACGGGAAGTCTTCAGTGAGGAAGATGATGACTTGATAGAGGAAAGGGGAAGGAATGCCTGTAGGAAGACGCGTGCGCACAATAGGCCTCAGATTTCAGATGTTTCTGAAGATGAGGGAGACGATGACGAAGATTCCGGAAAGGAAAATCGCAAAATTAGTCCCTTTGCATCGTTTCAAAAGACTACATACAGATCCACGAGGAATCACCGAAAAGTTCCGAGCTCTTCCGAAGAATCTGATGAGAGTGGATACACTGAAGATTCTGAGGAGCTTAACAATGGCCgtctttcaaggaaaaaaggcaaaaagaacGCGAAGAATTTATCTGTAAACAAAGCCGGACGAAAGGCAGCAAGGAAAACTAGAAGAACCGAAGAATCATCCGAGAATTCCAAACGACGACGTGCCAATGTTGAGATGGACACTTGTGAGCAAATTTTACGTGCACTTGTTCGTCACGAAGACAGCTGGCCGTTTACACAAGCGGTTAATGTTCGTGAGGTCCCAGACTACCTGGATCTTGTTTCAACCCCCATGGACCTGGGTACCatcaaaggaaaactgaataGTTTAGAGTACCCGGATGTGGACAGCTTTGAAGCTGATGTTCGGCTTGTATTTTCAAACAGTGACAAGTACAACTTGagcACTTCAGAGGTTGGACAAGCTGGCAAGAAACTGGAACAGTactttgacaaaatatttgaagagaaTTTCTCAAGCAAGGACAGGAAATCTAAAATCCATCGAAAACGATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF10537 all species →	WAC_Acf1_DNA_bd	ATP-utilising chromatin assembly and remodelling N-terminal	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR047174 all species →	Family	Tyrosine-protein kinase BAZ1B	Interproscan
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013136 all species →	Domain	WSTF/Acf1/Cbp146	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46802 all species →	TYROSINE-PROTEIN KINASE BAZ1B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0035173 all species →	Molecular Function	histone kinase activity	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0090535 all species →	Cellular Component	WICH complex	Interproscan
GO:0140801 all species →	Molecular Function	histone H2AXY142 kinase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11658	BAZ1B, WSTF; bromodomain adjacent to zinc finger domain protein 1B	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.