Gene detail

Detailed information of RMX51317.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1809:449722...458506
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004681

ATGAATGTTGCTGATTTACTAGCATTTCAGCCTGAGAGAGGagccaagagaaaaaatgatgagGAGGATCAGGTGTCCAttaatacaaagaaaagacCAATGGCTGCGGACAGGCCAACAGGTTCTGGTCTGTCTGAGGAggaaagattgaaaatattggAAATGGTAGAAAATGAACCAGAGATGGAAGCTCTTGATGTAGGTTCTCTGAAGAGGATGCTTCTGctctttgagaaaaaagttacaaaaaatcaagaaatgagGATAAAGTACCCAGAGAATCCAGAGAAGTTTATGGACTCAGAGCTTGATCTGAATGATGAAATtcagaagttacatgttataGCCACAGTTCCACATCTCTATCAGCACATTGTAGATGTTAATGCTGTTGGAACCATCCTAGGCTTGTTGAGCCATGAGAATTCAGACATCTCTATAGCTATCATTGATCTATTCCAAGAAATGACTGATGTGGACACACTTAATGAGAGTGAAGAGGGTGCTACTGCTCTTATAGATGCACTTCTTGAAGGGCAAGTGGTTGCTCTTTTAGCCCAAAATCTGGATAGACTGgatgaaaacatcaaagaaGATAGTGATGGTGTACACAATACATTAGGAATCATAGAGAACATGACTGAACTCAGACCTTCAGTATGCCAGGTGGCAGGTGAGCAAGGAATGCTGGGATGGCTTCTCAGAAGACTTAAGCAAAAGCCTCCTTATGATGCCAACAAACTTTACTGCAGTGAAATTCTCTCCATCCTTCTTCAAAACACAGAAGAAAACAGACAGCTTCTTGGAGAACTTAATGGAATTGACACACTACTACAATGTCTATCACTTTACAAGCGATATGACCCTACCTCATCAGATGAATTAGAGTTTATGGAAAATCTTTTCAACTGTCTGTGTTCCTCTTTGATGCACAATGCAAACAAAGATCTGTTCTTGAAGGGAGAGGGACTTCAGCTTATGATTCTCATgttaagagaaaagaaactCTCTCGTAGAAGTTCCCTGAAGGTGCTGGATTACGCCATGCAAGGAGCCGAAGGAGCTGAAAACTGCAGCAAGTTCATTGAATTCCTGGGACTTAGAAGCTTATTTCCGTTATTTATGAAGcCCTTCAAGAACAATAAGAAAGTTGGGTCCTCAGAAGAAGAAACTGAAGGGAACTTGAAGACCCGTCTTGTGCAGAAATTTGTGGAAAGTGATCACCTCAAAGTGGATAGATTAATGGAGCTTCACATGAAATATCATAACAAAATACAGGAGTGTGACGCCAagatagagagagagaagCAGGAGCTACAAGATGAAGGCGAGGAGATAGACGAAGCGTTAGAGGACGAGTTTTACATGCGGAGACTGGATGCCGGTCTGTTTACGCTGCAGCTAATTGACTGTATCATCATGGAAGTGTGTTCTTCTGGTGTCCCCTCGATAAAACAGCGGGTGGTTACTCTGTTAAACCAACATGGAGGTTCTTTAAAAGATATAAGAGCAATTATGAGAGAATATGCCGCGAGTGTGGGAGATGCCAAGAGTAAGGAGAGTcgagaaactgaaaagaagagaatCCTGTCGCTTATCGATAGATTTTAAAACCGCTGAACTATGGATTCGGTGATCAAGGCTCATTTGCATACGTCACCACTCGCTTACAGAAGCCTTCGGATCTCTAAACGCAGCGAGTCAGTTTCTCAACTGTAACAGCTTCTCGAAGTCACAATTTCAAAGAGCGAACAAAGTGTGCATGTCTGCGAGTCTGCGTTTCATCATTTAACTGGGACATAAAATACAACAGTATCTTTTAAGTGAATATGAcagtgatcttcgcagtaatgaacactacttaggcagttgtaaaaataaggcctgaaaaaaagaggtctgcaccagtatcgcagaggtcatgggaTCAAACTCCTTAAAggccttaattttttccaggcgttattttcactactgcgTACTTAAAGTAGTGTTCActactgcgaagatcactttcatgtAAActtctttatccgcagttcgaatatatgattttcatatattcacagtcatttagtATCTTTTGAGTGTCTAAAGTATTTTCTATGAATGAAGAGATCTTCTGTTTCAATTAGATGCTAAAGCAGTTCTTAAACTAAGGAAAGCTAGTTTaaaccattttccttttcacaagGATCTGTTATAAAGCTGCACACAActttgatgttaaaaaaaagtttctttttttcaacatacGAACATACGTGAACTGTATTTGTACCAAAATAAAGTCATGGTTTTTAGCCATCCTCATATAAGAAGTGTAAGGTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006429 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08216 all species →	CTNNBL	Catenin-beta-like, Arm-motif containing nuclear	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR039678 all species →	Family	Beta-catenin-like protein 1	Interproscan
IPR013180 all species →	Domain	Beta-catenin-like protein 1, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14978 all species →	BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12864	CTNNBL1; beta-catenin-like protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.