Gene detail

Detailed information of RMX51343.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1807:22936...44764
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00020063

ATGAGAGCGTTACCAACATGGGTCGATAAAGTCCACGACAAGGACAGAGTTGAGCAGTGCATTTACGACCTTGCATTCAAACCCGATGGAAGTCAACTCATCGTTGCCGCTGGAAACCGTGTTTTGGTTTACGATACAAACGATGGGACACTCATTCAGCCCCTCAAAGGTCATAAAGAAACCGTGTATTGTGTTGCATACTCCAGAGATGGAAAAAGATTTGCATCTGGAGGAGCTGACAAAAGTGTTATAATCTGGACATCAAAATTAGAGGGTATTCTTAAATATACACATAATGACTCTATCCAGTGCCTTGCCTACAATCCCCTCACACAGCAACTTGCAAGCTGTACAACGAATGATTTTGGTCTGTGGTCTCCAGAACAAAAGTCTGTTCAGAAGCACAAAGTTCCCTCAAGAGTGACCGCCTGTAGTTGGACAAATGATGGGCAATACCTGGCTCTTGGTCTTTTCAATGGATTTGTCAGCATAAGAAACAAGGGTGGAGAAGAAAAAGTGAAGATTGAGAGGCCTGGTGGTTCTCCTGTCTGGACACTGAGCTGGAATCCATCCAAAGAAGAACCTTATGACATTCTAGCTGTTGGTGATTGGTCTCAGAAGCTGTCTTTTTATCAGCTCAGTGGAAAACAGGTTGGAAAAGATCGTTATCTTGGATATGACCCATGCTGTCTAAGCTATTTCTCCAAGGGTGAATACCTTATTATTGGAGGATCTGACAAAAAATGCTCTCTTCACACAAAAGAAGGAGTGGCTTTGACATCTGTGGGAGAACAGCAAAGTTGGGTTTGGTGCTGCAGAGTAAGGCCAGATTCCAACTATGTGGCACTGGGATGTCAAGATGGAACAATAGCATACTATCAACTGATCTTCAGTACTGTCCATGGCTTGTACAAAGACAGATATGCCTTCAGAGACAACATGACCGATGTTATTATACAGCATTTGATAACAGAGCAGAAAGTTCGTATCAAGTGTCGAGACTTAGTCAAGAAGATTGCTATCTACCGACACAGACTTGCTGTGCAACTGCCTGACAAAATAGTTATTTATGAATTGAACACAGATGACATCTCTGATATGCATTATAAAGTCAAGGAAAAGATTGAGCGCAAGTTTGAATGCAACCTGCTTGTTGCCTGCTCCAATCACATCATTCTTTGCCAGGAGAGAAGACTCCAATGCTTAGCATTTACTGGGATCAAAGAGAGAGAGTGGGTGATGGATTCACTGATACGTTACATCAAAGTGATTGGTGGTCCATCAGGACGAGAGGGTCTCCTTGTTGGCTTAAAAAATGGCCAGATCATGAAAATATTTATCAACAATCCATTCCCCCTGTTGCTGTTGAAACAAGAGACAAGTGTTCGCTGTTTGGATTTAAGTTCAAGTCGAACCAAGTTAGCTGTGGTGGATGAAAACAGTACCTGTCTTGTGTATAGCCTCAATAACAATGAGCTGCTCTTCCAGGAGCCAAATGCTAACAGTGTTGCTTGGAATACCCACAATGAGGACATGCTGTGTTTTTCTGGTGGTGGTATGCTGAACATCAAGGCCAGTAACTTTCCTGTACACCAACAAAAACTACAGGGTTTTGTTGTTGGTTTCACTGGATCTAAGATCTTCTGTCTTCACGTGTACACCATGTCTGCAGTTGAAGTGCCACAGTCTGCTCCAATGTATCAGTACTTGGAAAAGAAATTATACAGAGATGCATACAAAGTTGCCTGCCTTGGCGTGACTGAGGGAGACTGGAGAGCACTAGCCATGGAAGCCATGGAGGGCCTGGATTTTGATACAGCTAAAAAGGCCTTCATCAGAGTGCGGGACTTGAGGTACTTGGAGTTAATCCACAACATTGAGGAACGTAAAAAGAAAGGAGAGACAGATGAACAGGCTTTCCTAGCAGATGTTTATGCCTATCAGGGAAAATTTCATGATGCTGGAAAGTTATACAAGAAGACAGGACATGATGAGAAGGCGATGGAGATGTTCACTGACCTAAGGCAGTTTGAATATGCAAAGGACTTCATCGGCGGCAGTGATCCTAAGAATGTGAAACAGCTGATCAGGAAACAAGCTGAGTGGTGTGAAACAACAAATGACCCCAAAGCTGCCGTGGACATGTTTATTGCTGCTGGCGAAAACCTCAAAGCTATTGAAATTATTGGACAACATGGATGGGTCGAGAAGTTACTTGAACTTGGAAGAAATATGAACAAAGCAGACACCGAGGGAATAAGACAGTGTGCTCATTTCTTCAAACAAATGGATCAGCACGGGTATGCGTCAGAAATGTTTATGAAGATTGGTGACATCAAATCACTGTTGGAACTTCACGTGGATACAAAACATTGGGATGAGGCATTTGAACTTGCGGAAAAACATCCAGAATTTAAGGATGATGTATTTGTTCCGTATGCAAACTGGTTGGCAGAAAATGACCGATTTGATGAAGCTCAGGAAGCTTTCCACAAAGCCGGGCGGAGGGATCAAGCGGTCAAAGTACTGGAACAGTTGTGTCACAACGCTGTCGTAGAACACAGGTATCACGATGCTGGATACTACTTCTGGAAGCTGTCAGTGCAATGTTTGGACCTGGTCGGTGGTGAAGAAAATTCCCAGGGTGAACCTGATTATGAAATGTTGGACAAATTTCACGAGTACCAGGAGAAAGCAGAGATTTATCATCTATATCACTCTATTCAAAGATACACTGATGAACCATTTACTTCCCATCTTCCAGAGACACTTTTCAACATCGCTCGTTATTTGCTACATATGCTGGTGAAAGAAATCCCACCAGGAGTGTCAAGAGTTTCGACGTTATTCGCGCTCGCCAAACAAAGCAAGAATTTAGGGGCGTATAAAATGGCACGTACAGCTTACGACAAGCTACAGTCATTGAAGATTCCTCTGCGTTTTCAAGAATCTATTGACCTGGGAAGTGTAACCATTCGCTCGAAACCCTTCCACGACAACGAGGAACTTCTTCCCCTGTGTTACCGCTGTTCCACCACGAATCCACTTTTGAACAACAAAGGAAACCAGTGTATCAACTGTGGGCAGCCATTTGTGTATTCATTTTCGTCTTTCGAAGTACTCCCGCTGGTCGAGTTTGTGTTGGAAGATGGCATCAGTAATGAGGATGCTTTGAAACTGATCGAGGCGGAACCACCCAAGAGCAAAGAAAAGAAGCACTCAAACTGGCAGGAAAGAGATATGGGAGACTTTCAGTCCCTGCAGTTTACAGATGAAACCCCCGAAGAGGAAGAAGAGGATCCGTTTACAGCTAAGCTGATGAGTTTTGAGCAAGGTGGATCTGAGTTCGTCCCAGTCCGCGTAGGTCGCTCAACTTTACAGGCCATGAACAGCCGCGAGGTGCTCATAAAGAAGTGGCCTAGTCCTCTAAAATACCAATATTACCGATCACTTCTCCCCGATGTCTCCATTACACTTTGTTCGTCGTGTAATCGGTTATTCCACACAGACGATTACGAGCTTTTGGTTTTACAGAAAAATTGCTGTCCGTTCTGCCGCAAACCAGCTGATCATCTGTAG

Transcript

rna-pdam_00020063

GTCTGTGAATTTCACCTTTACCGCCTGCAATGTTGTGTGCCCTTGCGTGCGCAGTAAGTGCAGTTTTCTTAGATTGAACCGATACTGTTTTTTCTCATATCTATGGGATACCAAGAATGATGCTGACTTTTTTCCTCTACATTAATAACAAGCACATGACATCattaagttaaataaaatacttatttgTCATTGACCGCTTGGGAGGTCCGTAGAGGAAAAGGCTGTGCCAAAGGTCTTCAGCAAAGACCCACATAATACATAACACTTGACCCAGATATACGGCAAAAGAACCTTATTCAGGCTATGTGACTGATTGCATTTCTCAAAATCCCATTAACAATCCCCAATATTTACGCTAAAAAAGGACACAATAGAAACAGGAAAGAACCTCTCTTCAGTCCCGCCACTACGCACAACTTGGAATCCCATGATACTCTGCGAGCAGCAgcattctctttttcatccCATGGTTCTTTgcgcaaatgaaaaattttatgtttttcttcgtGGAAAATGAGAGCGTTACCAACATGGGTCGATAAAGTCCACGACAAGGACAGAGTTGAGCAGTGCATTTACGACCTTGCATTCAAACCCGATGGAAGTCAACTCATCGTTGCCGCTGGAAACCGTGTTTTGGTTTACGATACAAACGATGGGACACTCATTCAGCCCCTCAAAGGTCATAAAGAAACCGTGTATTGTGTTGCATACTCCAGAGATGGAAAAAGATTTGCATCTGGAGGAGCTGACAAAAGTGTTATAATCTGGACATCAAAATTAGAGGGTATTCTTAAATATACacATAATGACTCTATCCAGTGCCTTGCCTACAATCCCCTCACACAGCAACTTGCAAGCTGTACAACGAATGATTTTGGTCTGTGGTCTCCAGAACAAAAGTCTGTTCAGAAGCACAAAGTTCCCTCAAGAGTGACCGCCTGTAGTTGGACAAATGATGGGCAATACCTGGCTCTTGGTCTTTTCAATGGATTTGTCAGCATAAGAAACAAGGGTggagaagaaaaagtgaagaTTGAGAGGCCTGGTGGTTCTCCTGTCTGGACACTGAGCTGGAATCCATCCAAAGAAGAACCTTATGACATTCTAGCTGTTGGTGATTGGTCTCAGAAGCTGTCTTTTTATCAGCTCAGTGGAAAACAGgTTGGAAAAGATCGTTATCTTGGATATGACCCATGCTGTCTAAGCTATTTCTCCAAGGGTGAATACCTTATTATTGGAGGATCTGACAAAAAAtgcTCTCTTCACACAAAAGAAGGAGTGGCTTTGACATCTGTGGGAGAACAGCAAAGTTGGGTTTGGTGCTGCAGAGTAAGGCCAGATTCCAACTATGTGGCACTGGGATGTCAAGATGGAACAATAGCATACTATCAACTGATCTTCAGTACTGTCCATGGCTTGTACAAAGACAGATATGCCTTCAGAGACAACATGACCGATGTTATTATACAGCATTTGATAACAGAGCAGAAAGTTCGTATCAAGTGTCGAGACTTAGTCAAGAAGATTGCTATCTACCGACACAGACTTGCTGTGCAACTGCCTGACAAAATAGTTATTTATGAATTGAACACAGATGACATCTCTGATATGCATTATAAAGTCAAGgaAAAGATTGAGCGCAAGTTTGAATGCAACCTGCTTGTTGCCTGCTCCAATCACATCATTCTTTGCCAGGAGAGAAGACTCCAATGCTTAGCATTTACTGGGATCAAAGAGAGAGAGTGGGTGATGGATTCACTGATACGTTACATCAAAGTGATTGGTGGTCCATCAGGACGAGAGGGTCTCCTTGTTGGCTTAAAAAATGGCCAGatcatgaaaatatttatcaacaatCCATTCCCCCTGTTGCTGTTGAAACAAGAGACAAGTGTTCGCTGTTTGGATTTAAGTTCAAGTCGAACCAAGTTAGCTGTGGTGGATGAAAACAGTACCTGTCTTGTGTATAGCCTCAATAACAATGAGCTGCTCTTCCAGgAGCCAAATGCTAACAGTGTTGCTTGGAATACCCACAATGAGgacATGCTGTGTTTTTCTGGTGGTGGTATGCTGAACATCAAGGCCAGTAACTTTCCTGTACACCAACAAAAACTACAGggttttgttgttggtttcaCTGGATCTAAGATCTTCTGTCTTCACGTGTACACCATGTCTGCAGTTGAAGTGCCACAGTCTGCTCCAATGTATCAGTacttggaaaagaaattatacaGAGATGCATACAAAGTTGCCTGCCTTGGCGTGACTGAGGGAGACTGGAGAGCACTAGCCATGGAAGCCATGGAGGGCCTGGATTTTGATACAGCTAAAAAGGCCTTCATCAGAGTGCGGGACTTGAGGTACTTGGAGTTAATCCACAACATTGAGGAAcgtaaaaagaaaggagagaCAGATGAACAGGCTTTCCTAGCAGATGTTTATGCCTATCAGGGAAAATTTCATGATGCTGGAAAGTTATACAAGAAGACAGGACATGATGAgaagGCGATGGAGATGTTCACTGACCTAAGGCAGTTTGAATATGCAAAGGACTTCATCGGCGGCAGTGATCCTAAGAATGTGAAACAGCTGATCAGGAAACAAGCTGAGTGGTGTGAAACAACAAATGACCCCAAAGCTGCCGTggACATGTTTATTGCTGCTGGCGAAAACCTCAAAGCTATTGAAATTATTGGACAACATGGATGGGTCGAGAAGTTACTTGAACTTGGAAGAAATATGAACAAAGCAGACACCGAGGGAATAAGACAGTGTGCTCATTTCTTCAAACAAATGGATCAGCACGGGTATGCGTCAGAAATGTTTATGAAGATTGGTGACATCAAATCACTGTTGGAACTTCACGTGGATACAAAACATTGGGATGAGgcatttGAACTTGCGGAAAAACATCCAGAATTTAAGGATGATGTATTTGTTCCGTATGCAAACTGGTTGGCAGAAAATGACCGATTTGATGAAGCTCAGGAAGCTTTCCACAAAGCCGGGCGGAGGGATCAAGCGGTCAAAGTACTGGAACAGTTGTGTCACAACGCTGTCGTAGAACACAGGTATCACGATGCTGGATACTACTTCTGGAAGCTGTCAGTGCAATGTTTGGACCTGGTCGGTGGTGAAGAAAATTCCCAGGGTGAACCTGATTATGAAATGTTGGACAAATTTCACGAGTACCAGGAGAAAGCAGAGATTTATCATCTATATCACTCTATTCAAAGATACACTGATGAACCATTTACTTCCCATCTTCCAGAGACACTTTTCAACATCGCTCGTTATTTGCTACATATGCTGGTGAAAGAAATCCCACCAGGAGTGTCAAGAGTTTCGACGTTATTCGCGCTCGCCAAACAAAGCAAGAATTTAGGGGCGTATAAAATGGCACGTACAGCTTACGACAAGCTACAGTCATTGAAGATTCCTCTGCGTTTTCAAGAATCTATTGACCTGGGAAGTGTAACCATTCGCTCGAAACCCTTCCACGACAACGAGGAACTTCTTCCCCTGTGTTACCGCTGTTCCACCACGAATCCACTTTTGAACAACAAAGGAAACCAGTGTATCAACTGTGGGCAGCCATTTGTGTATTCATTTTCGTCTTTCGAAGTACTCCCGCTGGTCGAGTTTGTGTTGGAAGATGGCATCAGTAATGAGGATGCTTTGAAACTGATCGAGGCGGAACCACCcaagagcaaagaaaagaagcactCAAACTGGCAGGAAAGAGATATGGGAGACTTTCAGTCCCTGCAGTTTACAGATGAAACCCccgaagaggaagaagaggatCCGTTTACAGCTAAGCTGATGAGTTTTGAGCAAGGTGGATCTGAGTTCGTCCCAGTCCGCGTAGGTCGCTCAACTTTACAGGCCATGAACAGCCGCGAGGTGCTCATAAAGAAGTGGCCTAGTCCTCTAAAATACCAATATTACCGATCACTTCTCCCCGATGTCTCCATTACACTTTGTTCGTCGTGTAATCGGttattcCACACAGACGATTACGAGCTTTTggttttacagaaaaattgcTGTCCGTTCTGCCGCAAACCAGCTGATCATCTGTAGCGCTAATTTCGACTTTCTACACTGAGCCCGTGGGCTTTGATCATCACAGTTACTTAGCAAAATGGCATGCTGTCATTTCATCACTCTCTCGTTCGTAACAGTGTTATTTTTAGACTCAATGTCGAGATATGAAGTTTGCCTTTGcgttttaagaatttttcgTCGAAATGGATTTCAATACAATAATCCACTTTTTTCCCCAGCAGAAGAATTTTCACCTTACAGCCACGTTCATCTTGATcagtgaaaatttgtttatacaGTTCATTTATACAGTTTGTATATAGCTTTGCTTGTTATTTCGTTCTAATGTAAATATCATGCTTTTTCCAAAGAGACCTGAactgaaagtaaattaattacagCACGGAAACCTCATTAAAAGCTGCTTACAGAAGAACAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039857 all species →	Family	Intraflagellar transport protein 122/121 homolog	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12764 all species →	WD REPEAT DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19656	IFT122; intraflagellar transport protein 122	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.