Gene detail

Detailed information of RMX51372.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1805:268950...277402
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00011370

CAAGAGTTGAAGGTCGCGAATTTTCTCTGCATttcattgaattgaaaattatcgGATATCAGGCCAGTGTAAATATCTGCGAGTCACGCCGCTTTATGCTTGAGAAAACTCTTTGTCATGGCACCCACGGAGGAACCGAAAGTACACTTATCGTGAAAAGGAATGGAcgttttttagttttacagCGTTTGACATATAACTCAGCTGTGCTTAAGTCGATTTCTTGCGAAGTTTGATTGTTGTAGGAAAACGACCGTAGAGCTCTTAGAAAAGCCGTGTCGTGTATAAGTCAACGTGGTTTTCTTCTTAGTGTTTCGTTTACTTAATTTGGATGAGAAAAGGAACTTTTTGCGAAGTTTCTAATCAAATAATTGAACAACATCCGTGAAAAGATGTCCAGTGACAATAGCGCTCCAACTGCTCCCGGCGAGGGAATTTCAGCTGCTTCGGTCGCCGCGGCCTCCTTCTCGTCGGATTCTTCTTCGCAATCTTTGAATTCACAAGAAAATGCTCTGCAGTGTTCTGAATCATTAGTGTCTTCAGGACCATCAGATGATAGTCAAACCGATTCTCAGGCAATCTCTCTGGGTGGGAGTGTGTTTACAGCCATCCAGTTACCAGCAAGAGCTGGCAATGAAGTAGGATCAGATGTGTCAACTTCTGATAGTGGTCTAGGCAAAGATGCCTGTGATTCTGAGGCAAGAGTTTCTGCTCCAACACTGCCTTTTGTGCCCCAGTCACACCTCATTGACAAGTTGCCAGTTCCAGCATCAAATGGTTTACACTACTCTCCTGGACTCCTAGCAGCCAGTAACCTTTCTCAGTTGGCAGAGTTAGCTGCTAATAAGTCTGCTATACATCAAACTCCACCAAACACCACCCAGCTACCTGCACAGCCCATGCAACCACACCTCATTGGAAACCAAACTAGATTTGTCCTTCCTGGACAGGGAATACCTACTCCTATCATTGGGACATATCCCTCAGGAACTTTGATGCAAGTACCAGGACAATATCAGGGATTTCCCCCTGTCCCTCATCAGGTGCCTCCACCATTCATTAAAGGTTCCAACATTCAGCTTACTACTGGTGATGTAAAGAGAGTTGAAGACCTTTCCACAGAAGATTTCATTCACAGTATCAGACAGAGTCCTGAACTTAAGCTAGAGACAAGCACTGTTgtaaaaattgaagatggAACAGAACCTGGAAGCACTCATATTACTTTCACTATCAACAGTTCTAAAATACAGgtgattcTAAACTGTCCTGTAGAGCATCCATTTTTCGTTTATGGTCAGGGGTGGACATCAAGCAGTCCAGAACAGTCCTCAACCAAGTACAACCTTAACTGCCAGCAGTTGAAAGTTGGTGATGTgtgtatttttctctctgcATCCAGTGCCCCTAGTATTCCTGGTGGGCTTGGATTTTCAAGTTCACCAGCCATTCAAGTGAGTGGAGCTGGTTCTACTCTAACACAATCTGCTTCAGTAGTCTTGTCAAGTGCAGTGAAGTCTCCATCTGTGAGTAGCAGCACGGGACAAACAGTGACTTCTGTGTCAGTGTCGTATGCCCAGACATTGCCTGGAATTGTAACCTTACCAGGAAACATACCTGGGGTTGTTGTTACTTCATCGATGCCACCTGGCATTCCTGCAGTGTACCCAGGAAGTTTTCCCTCAGCCCAAAATATTGGCCAGGGGAAGGTTGCTGGACAGAGTGGAACTGACAGGTCATCTGTTCCACAGCCAGTACAGGGGTTCACACCTGATGGAAAACCATCAGAATCTCCACATTCCACTGCAGCAGTACCAGGAGGTTTTCCTTTGTCTGGGGCACCTTTCTACCAACCTCTTACTGGAACATTTATGACGGCTATGCCTCCAGGACAAACATTTGTGCAAGGAACTGTTATGCCACAGGGTTCTGTGGGAAATGGTCTGCTTGTTGCTGCAGTTGGTTTTGTACCAGGGAGACCACCAGCACCATTTGTTCAACCTGGAATGCTCTATGGCTCCACACCAATGGAAATGCTACAAAAAGGAGGCGACAGCAAACCAGAAGAATATTCACAAAAGGAAAGGACTGACTCACAAACTGAATTGTCACAACCTGATGCCAAGAGGGCAAGAGGAGAAACAGAAGTAAAATAGACCTTTAATTTGTGAGTGTTTTTATAGATAAGAGAAAATCAAGGGGACTGAAAAAGAGATATTGTTATATAAAtgtatattatatatatataagaaaaatgtcttataacttttatttatttgtaggTAAGACAAAAATCTGAAGTTGTCTTAAGTCATACCAACCATTAACGAGGATAgtaacattttgtgttttcttagCAAAGAAGTGTCCTGTATTAAATCTTGTAAATGTTGTGTTCAATCTTGCTGTAAGCACCTATTCTCCACTATGATTTGAAATGGCTTTACAGTATAATTGATTTAGTTCAGTGGAGTAAACACAATCTGAGGTACTTGTAAGTATCATAAggattatttataaaaaacaCTTAATAGTTAAAAAACCTTCATCCAATCTTACTGTGGtcatttgaatcattttattttaaaaaaaaagtaatttttttctttttatttggtattgttttctttttatttgatattgttATGCTATTTACTATTTTTCAGTCAGAGACCTTACAAATAAGTAATGATAAGTGTCACACAAAGTTTAGACCTCAAAGTGGGTCattcctgaaaaaatatttgccaaCTCTTAATGGTTAAATTTCAACACAAAGTAGCAGAAAACTCTCTCTGATTGGTGTGATACTTGGAATTTCTTCAAGCAAGGAACCTTATCAAACTACTGTAGCTGGATTAGCTATTAACAATTGATGATACAACTAGTAACAATTACAACTAATTAAGTGTGAAACACAGTACTAAACAGGAGTGGTAGCCTGGCAGAACTGCCAACATCAAGTTACGGACACCAAATTGCAGAATACtttgaagaacattttattaAGAACTTGACAGATATCTAATATTGAGGTTTGAGGGAATGTTGTGAATTCAGAATTATGTCTatccaaaacatattttgaaagagtttCATCTAACCACACATGAAGAGCAGAGTAAGTTGAGGGGTCAATTACAGTGATGTTTGATAGGGTGTAAGTAGTGTCAGTGATAGGGCCAGTTCAAGCTCAAATGAATATCGATAGATGCATCATAGCTTTGCCCTAAGAAGGACCTTTGAGGGCTTGTCTGTTTGCAACTTGGGTGTCTAGCTCTCAAATGCTGTTGTGCAACCAAAGTTATGAAGGTTGCACAGGGACTGGAGTTGGTGGCATGTGGCTCTTGGGCTCTGCTGGACCACTTCTTTGATACAAATATTCTTAAAGTTAGTGGGAAGTGTAAGCTACAAGCCATGGTTGAGATTGCTTTTTGAGTCTGATTGTTTGAGAGGATGCCAGACTTAGGAAGAGTGCAACTCCAGATTATACTCAATAAtcatcaattgaaaatgttcctgtttatttatttattttaggaTAAGTGTTAATGagacagttttaaaatagtaaatgatTACTAAGTTATTAACTTACTGATGGTAATTGTGTTTGATATGATTTTGTAAGTTTGGGTTTCGTAAATGTGCTAGCAAGAACTAAAATATGTTATGGTTAACTTATTTCTTGCAAGCATGTCTTTGAAGAAATgtatgttgaaatttttaaaatcattttaaggttttaaCTTTTGCTCTCAAACAGATTTTATCACTTTCTTGTTAAAGACACGTTAACAAGTACAACACAACACTAACAACTGACATGACTATCACTTCAGGTCTCTTCACTCAAAGTGAAACCAACACATtagtatttcagttttgttttaaacctATTGAACTGTAATGTAgctaaggttttttttaagtggtgTTTTGATTGCTAATATTAAAAGCATGTTCTTTACAGTAATATTCTTTTCATCAAGAATTGAAAGTTTGTAATGTTGATTTAGTAGAAAGCCCCATTTTATTCGCTATATGTTTTCCAACTTAATGgtgatgcaatttttttggttgctCAGCATGTATAAACCATGCCATGACCAATCCAACTCTTGTCACTCATTGGGAAAGAAAGGCTAACTTCCAAACCTGGTTGCATAGGATTTTCACACTCAGAGTTTGTCTGTTTAAAGTGAGTCTTAAAGGCACTAGGACTTAGATTGtgctgtaaggaaaaattgagtCGAATTGTTGTTCAAGTTGACTTTACATGCACAACATATCGGGGAGATAATATACCTTACTGAATTTTAACTCATAATGTACATCCTCAACTGAAATTATTTGTACACTACCAACTGAAGGGAAACAGCTATAGGCTTGATTTCAGCTCATTCCTCTTCACTTCTTTCTGAGGTATCCCTGGGAAGGAAGAGGAATGTGGAGTCATTGCTAGAACAGAGGCTGGTATTGACAATGACTAGTTCAAAATGGGGGttttttctaaagttttgCATTTAGCCAAACAGTTGGATTGTGGGTGCAAGGGAGGTGGTGCAAATATGAAGGATGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08517 all species →	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036096 all species →	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR003652 all species →	Domain	Ataxin, AXH domain	Interproscan
IPR043404 all species →	Family	ATAXIN1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13392 all species →	ATAXIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23616	ATXN1_1L; ataxin 1/1L	-	Pathways of neurodegeneration - multiple diseases	ko05022	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.