Gene detail

Detailed information of RMX51380.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1805:7741...16690
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00011347

ATGTCGTTGTTACGCTCGGTTATTCCGCTGTCGATTCTTGTGCTGCTTCACGCTCCTAAAGCATTCGCTGAAAAAGCTAAAACCGTGGTTGTTGACAAATGGTACGACGGATTCAAGGGATTAATTACTCTGGACCTCACGGATGATGTTACCTCTGGGTGGACCTTGACTTTGTCTTTTCCAGTTCCTACTCCGAATTTGGAAATTTGGCGAGCAGAGATAGTTGACAACCAAGGCGATAAAGTATATACAATGAAGAATATGCCATGGAATACACAAATGTCTAAAGGAACCTTCAAGTTGTATTTCATCGCCAAAAAGTCTGACGTAACAAAGGATCCTCCTATTGGCGCCGTCATGTTTAGTCGCGGTGCACCAATAACCAACCAACCGCCCACTGCTAGCCCGAGTCCTCCTCCGCCAGTGACGAAACCGCCCAGTTCATCTCCTGGCCCTGACACCACTCGACCTACGCAGCCGCCGCAAACCACTGCACCTCCTTCGCTAACACAATCGCCGTCTCGGGGCCCCGGAAAGTATGACTACAGTGAAGTGCTGAAACTTTCCATCTTGTTCTACGAAGCTCAGCGATCTGGCAAGCTTCCACCTAACAACCGAGTCAAGTGGAGAAAGGACTCGGCACTAGGTGACAAAGGGCCGAACGGTGAAGACTTAACCGGTGGATGGTATGACGCGGGTGATTACGTTAAGTTTGGTTTTCCGATGGCATCATCTGTCACAGTGTTAGCCTGGGGTATTGTGGAATACAAGGAGGCTTATGTAGCTGCTGGCCAGTACAGCAACGTGTTAAATAGCATCAAGTGGGCCACGGACTATTTCATAAAAGCTCACACGAAAAAAGAAGAATTCTATGGTCAGGTTGGAGATGGAGATCTTGACCACGCTTTTTGGGGCAGACCTGAAGACATGACCATGAGGCGACCCGCCTGGAAGATCACTCCACAAAATCCTGGATCCGATCTCGCAGCTGAAACTGCAGCAGCACTGGCCGCTGCATCGATTGCCTTTAAAGCTCAAAATACTCGTGCCTCTAAGAAGTATGCTAGGAAACTTTTAACGCACTCAAAGCAACTGTACGCGTTTGCAGACAAATATCGTGGAGTATACAGTGATTCCATTCCCAACGCAGGGAAATTCTACAAATCCTACAGCGGGTTTCAGGACGAGTTAGTGTGGGGTGCAGCTTGGTTGTACAGAGCGACAAAGGAGTCTTCATATCTTGTGAAGGCTGAGAAGTACTATAAGGATTATGGGATGGATGGTCAGGCCTGGGCATTTTCTTGGGACGATAAAAAAGCCGGGGTACAGTTGCTGCTCGCTCAGTTGACGAGAAAAGAATCCTACAAAAACGCCATTAAAGCATCTCTCGACAACTGGCTTCCCGGAGGTAGTGTCCGTTACACTCCCAAGGGTCTTGCATGGCGTATCAAATGGGGCTCCAACCGATATGCAGCCAATACAGCTTTCCTGGCGCTGGTTGCCGCTGATCAGGGTCTAAAGCGAACAGCTTATCGCAATTTCGCAAAGAAACAAATTAATTACGTGCTTGGAGACAGTGGACGCAGCTTCGTGGTTGGGTTCGGAAAAAATCCACCACGAAGACCACATCACAGCTCCAGCTCCTGCCCGTCCGCTCCACAGCCATGCGGTTGGGATAACTTCAACGCGGATATACCCAATGCGCATGTTCTAAAAGGTGCATTAGTTGGGGGTCCCGACGAGAATGACAACTACAAGGACGACAGAAAAGACTACGTCATGAATGAAGTCACTACTGACTACAACGCTGGTTTCCAGTCTTCTGTCGCGGCGTGTCTGCTGTTCTTTCTGCTCTTCGCACGCCACACCTGTGCAGAACAGTCCCGCATTACTGTTGTCAACGAGTGGAACACAGGCTTCACTGCCAAATTCACCTTCAGACTACAGTCCAAGGTTACTGACGGTTGGATCATCACCTTGACTTTCAGTAAACCAGCACTGAAACTGCAGACATGGATTGGTGATATAAAGTCTGTGTCTCCAGACCGCAAGCGCTACGTGATTACCAACAAACCGTGGCAAAAACAACTGAATGCTGGCTATGAGCTATCTACTGAAATCGTTTTAACTAAGCCTGTTGCGAACTCACCAGCTCCTGGCGGTGTGGCCTTATTCCAGAGGCTTGGTGCTGGCGCTGGGGGAGGAGCTGGAGGAGGTAACACTGGTGGTGGCGGAGGGGGACACACAGGCGGTGGGGGTGGTGTGATAGCCAAACCGACTGCACCTCCAGCCCCAGGTCCGTTCAATTACAACGAGGTCCTCCGCAAGTCCATTCTGTTTTATGAAGCACAGCGGGCTGGACGTCTTCCCGCCACAAACCGAATCCCTTGGAGAAAAAGCGCGACTCTTCGGGACGGTGCAGATGTTGGAGTGGATCTTAGTGGTGGTTGGTTTGACGCAGGAGATTTCGTCAAGTTTGGTTTCCCTATGGCTTCAAGTGTAACAGTGCTAACCTGGGGTCTGTTGAAGTATAAAGAAGCTTATATTGCAGCTGGGGAACTGAAAAGCATGTTGGACTGTATTAAATGGCCATTGGACTATTTCATGAAAGCGCACACCTCTAAGTTTGAGCTTTACGTACAGGTTGGGGATGGTGTTAAAGACCATGAATATTGGGGCAGACCAGAAGACATGCATATGGCCAGACCTGCTCTGAAGATCACAGCTCAGAGGCCTGGATCTGACGTTGCTGCCGAAACAGCCGCTGCCTTAGCCGCGGGCGCTATAGCTTTCCGGAAGTCTAATCCATCTTATTCTAACCAGTTATTGGCGCACGCTAAGGGGATTTACGAATTTGCAAGAACCTACCTCGGGAAGTACAGTGATTCTATACCCAGGGCTGCAAAATTCTACAAGTCTGGTGGTTATAAAGACGAACTAGTGTGGGGAGCTGCTTGGCTTTACAGAGCTACACGCGATAGGAAGTATCTTACCTTGGCGGAGTCCCTTTATAAAAAGTATTACCTCAGTTCATCTTGGGCCTTTTCCTGGGATGACAAGACTGCTGCAGTACAGATGCTTCTGTATGGACTCACGAAGAAGCCGCAGTATAAGCTGGCCATTCAGAAGTACCTTGCAAACTGGTTGCCTGGTGGTTCCCTCAAACGCACTCCAAAAGGCCTTGTTTTCCGTGATGCCTGGGGAGCAAACCGATTCGCCGCCAACACAGCCTTCCTAGCACTGCTAGCCGCTGACCAGGGTCTCAACCCGACCACGTATCGTCAATTTGCAAGAAAGCAGATCCACTACATGCTTGGCGACAGTGGACGCAGTTATGTGGTTGGATTTGGGAAGAATCCTCCCCAAAGACCTCACCACCGCTCCAGCAGCTGTCCTTCAGCCCCTGCCCGATGTGACTGGGGAAACTATCACAACTCTGGTCCTAACGCGCATGTGCTGCATGGTGCCTTAGTTGGTGGGCCTGATCGCTATGACAACTTCAAAGACGATAGAACAGAGGTAAAGTACTCCGAGGTGGCTACCGATTACAACGCTGGGTTCCAGTCTGCCGTGGCTGGGCTGAGGCGTCTACAG

Transcript

rna-pdam_00011347

ATTTGTTGATAGATATTCACACCATGTCGTTGTTACGCTCGGTTATTCCGCTGTCGATTCTTGTGCTGCTTCACGCTCCTAAAGCATTCGCTGAAAAAGCTAAAACCGTGGTTGTTGACAAATGGTACGACGGATTCAAGGGATTAATTACTCTGGACCTCACGGATGATGTTACCTCTGGGTGGACCTTGACTTTGTCTTTTCCAGTTCCTACTCCGAATTTGGAAATTTGGCGAGCAGAGATAGTTGACAACCAAGGCGATAAAGTATATACAATGAAGAATATGCCATGGAATACACAAATGTCTAAAGGAACCTTCAAGTTGTATTTCATCGCCAAAAAGTCTGACGTAACAAAGGATCCTCCTATTGGCGCCGTCATGTTTAGTCGCGGTGCACCAATAACCAACCAACCGCCCACTGCTAGCCCGAGTCCTCCTCCGCCAGTGACGAAACCGCCCAGTTCATCTCCTGGCCCTGACACCACTCGACCTACGCAGCCGCCGCAAACCACTGCACCTCCTTCGCTAACACAATCGCCGTCTCGGGGCCCCGGAAAGTATGACTACAGTGAAGTGCTGAAACTTTCCATCTTGTTCTACGAAGCTCAGCGATCTGGCAAGCTTCCACCTAACAACCGAGTCAAGTGGAGAAAGGACTCGGCACTAGGTGACAAAGGGCCGAACGGTGAAGACTTAACCGGTGGATGGTATGACGCGGGTGATTACGTTAAGTTTGGTTTTCCGATGGCATCATCTGTCACAGTGTTAGCCTGGGGTATTGTGGAATACAAGGAGGCTTATGTAGCTGCTGGCCAGTACAGCAACGTGTTAAATAGCATCAAGTGGGCCACGGACTATTTCATAAAAGCTCACacgaaaaaagaagaattctATGGTCAGGTTGGAGATGGAGATCTTGACCACGCTTTTTGGGGCAGACCTGAAGACATGACCATGAGGCGACCCGCCTGGAAGATCACTCCACAAAATCCTGGATCCGATCTCGCAGCTGAAACTGCAGCAGCACTGGCCGCTGCATCGATTGCCTTTAAAGCTCAAAATACTCGtGCCTCTAAGAAGTATGCTAGGAAACTTTTAACGCACTCAAAGCAACTGTACGCGTTTGCAGACAAATATCGTGGAGTATACAGTGATTCCATTCCCAACGCAGGGAAATTCTACAAATCCTACAGCGGGTTTCAGGACGAGTTAGTGTGGGGTGCAGCTTGGTTGTACAGAGCGACAAAGGAGTCTTCATATCTTGTGAAGGCTGAGAAGTACTATAAGGATTATGGGATGGATGGTCAGGCCTGGGCATTTTCTTGGGACGATAAAAAAGCCGGGGTACAGTTGCTGCTCGCTCAGTTGACGAGAAAAGAATCCTACAAAAACGCCATTAAAGCATCTCTCGACAACTGGCTTCCCGGAGGTAGTGTCCGTTACACTCCCAAGGGTCTTGCATGGCGTATCAAATGGGGCTCCAACCGATATGCAGCCAATACAGCTTTCCTGGCGCTGGTTGCCGCTGATCAGGGTCTAAAGCGAACAGCTTATCGCAATTtcgcaaagaaacaaattaattacGTGCTTGGAGACAGTGGACGCAGCTTCGTGGTTGGGTTCGGAAAAAATCCACCACGAAGACCACATCACAGCTCCAGCTCCTGCCCGTCCGCTCCACAGCCATGCGGTTGGGATAACTTCAACGCGGATATACCCAATGCGCATGTTCTAAAAGGTGCATTAGTTGGGGGTCCCGACGAGAATGACAACTACAAGGACGACAGAAAAGACTACGTCATGAATGAAGTCACTACTGACTACAACGCTGGTTTCCAGTCTTCTGTCGCGGCGTGTCTGCTGTTCTTTCTGCTCTTCGCACGCCACACCTGTGCAGAACAGTCCCGCATTACTGTTGTCAACGAGTGGAACACAGGCTTCACTGCCAAATTCACCTTCAGACTACAGTCCAAGGTTACTGACGGTTGGATCATCACCTTGACTTTCAGTAAACCAGCACTGAAACTGCAGACATGGATTGGTGATATAAAGTCTGTGTCTCCAGACCGCAAGCGCTACGTGATTACCAACAAACCGTGGCAAAAACAACTGAATGCTGGCTATGAGCTATCTACTGAAATCGTTTTAACTAAGCCTGTTGCGAACTCACCAGCTCCTGGCGGTGTGGCCTTATTCCAGAGGCTTGGTGCTGGCGCTGGGGGAGGAGCTGGAGGAGGTAACACTGGTGGTGGCGGAGGGGGACACACAGGCGGTGGGGGTGGTGTGATAGCCAAACCGACTGCACCTCCAGCCCCAGGTCCGTTCAATTACAACGAGGTCCTCCGCAAGTCCATTCTGTTTTATGAAGCACAGCGGGCTGGACGTCTTCCCGCCACAAACCGAATCCCTTGGAGAAAAAGCGCGACTCTTCGGGACGGTGCAGATGTTGGAGTGGATCTTAGTGGTGGTTGGTTTGACGCAGGAGATTTCGTCAAGTTTGGTTTCCCTATGGCTTCAAGTGTAACAGTGCTAACCTGGGGTCTGTTGAAGTATAAAGAAGCTTATATTGCAGCTGGGGAACTGAAAAGCATGTTGGACTGTATTAAATGGCCATTGGACTATTTCATGAAAGCGCACACCTCTAAGTTTGAGCTTTACGTACAGGTTGGGGATGGTGTTAAAGACCATGAATATTGGGGCAGACCAGAAGACATGCATATGGCCAGACCTGCTCTGAAGATCACAGCTCAGAGGCCTGGATCTGACGTTGCTGCCGAAACAGCCGCTGCCTTAGCCGCGGGCGCTATAGCTTTCCGGAAGTCTAATCCATCTTATTCTAACCAGTTATTGGCGCACGCTAAGGGGATTTACGAATTTGCAAGAACCTACCTCGGGAAGTACAGTGATTCTATACCCAGGGCTGCAAAATTCTACAAGTCTGGTGGTTATAAAGACGAACTAGTGTGGGGAGCTGCTTGGCTTTACAGAGCTACACGCGATAGGAAGTATCTTACCTTGGCGGAGTCCCTTTATAAAAAGTATTACCTCAGTTCATCTTGGGCCTTTTCCTGGGATGACAAGACTGCTGCAGTACAGATGCTTCTGTATGGACTCACGAAGAAGCCGCAGTATAAGCTGGCCATTCAGAAGTACCTTGCAAACTGGTTGCCTGGTGGTTCCCTCAAACGCACTCCAAAAGGCCTTGTTTTCCGTGATGCCTGGGGAGCAAACCGATTCGCCGCCAACACAGCCTTCCTAGCACTGCTAGCCGCTGACCAGGGTCTCAACCCGACCACGTATCGTCAATTTGCAAGAAAGCAGATCCACTACATGCTTGGCGACAGTGGACGCAGTTATGTGGTTGGATTTGGGAAGAATCCTCCCCAAAGACCTCACCACCGCTCCAGCAGCTGTCCTTCAGCCCCTGCCCGATGTGACTGGGGAAACTATCACAACTCTGGTCCTAACGCGCATGTGCTGCATGGTGCCTTAGTTGGTGGGCCTGATCGCTATGACAACTTCAAAGACGATAGAACAGAGGTAAAGTACTCCGAGGTGGCTACCGATTACAACGCTGGGTTCCAGTCTGCCGTGGCTGGGCTGAGGCGTCTACAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00553 all species →	CBM_2	Cellulose binding domain	Domain	Interproscan
PF00759 all species →	Glyco_hydro_9	Glycosyl hydrolase family 9	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008965 all species →	Homologous_superfamily	CBM2/CBM3, carbohydrate-binding domain superfamily	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR001919 all species →	Domain	Carbohydrate-binding type-2 domain	Interproscan
IPR012291 all species →	Homologous_superfamily	CBM2, carbohydrate-binding domain superfamily	Interproscan
IPR033126 all species →	Active_site	Glycosyl hydrolases family 9, Asp/Glu active sites	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR018221 all species →	Active_site	Glycoside hydrolase family 9, His active site	Interproscan
IPR001701 all species →	Domain	Glycoside hydrolase family 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22298 all species →	ENDO-1,4-BETA-GLUCANASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0030247 all species →	Molecular Function	polysaccharide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX51380.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.