Gene detail

Detailed information of RMX51645.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1730:14853...23708
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00021481

TTCTTTCAGCTTGTTACTTTTATTACAAGGGTGCATCCCTCTTTCACTCTTACCATTATTATTTACTCTTTTTCATTACTGTGCTTGCATCAAACTTTTCTTACAATAGACAATCATTATTTCAGGCTAGTTACAATATATGATCACTCTCACTACTTCTGCGTTAAGCTCAAATTAAATACATTAATACAATCCAACTGCTCATATTAAAACTAAGATATACCCAACCATATTTTTTAGGCAGACACCCTTTAAAATCCAGACCTTAAGTGAAACCTGCTCAATTTCCCAAATTACAAATTCTGAATCCAATTTGAATCTAGAATTGTCAACTGTGTCTAATATTCTTTTCAATACACCATATCTGACACTACTTACAACTATCAATACTATTACACATATTATAGATTCACCAAACCTTACAGCAGTACAGGTAGGCATCTAGCATAACCTACCAAACACCAGAAACAAGTAAACACATTATGTATCTCAGATGTTTGCAgtacaaaattcaaatatacACACATGCTTCTTTAGAACAGAAGTCGTAAAGTGCAATAATCAGCCATCTCGGCAATATGCTTTTCTATGTACATAGGTCTATATATTAATATACATCTCAGGATTTCAGATTTCCTTAATATGGCAAAAAACAATGACTTTGAACAAATGCTTCAACAGGAATGCAAGAGATTTAATCCAATTGCCACAAGGCAAATCAAGTATACAGTGATCCAAGTTTTGGCACACTATGATTACTGGTACCAGATTATGAGGCAAACTTCCTGTGCCATAGTCATCCCACCGCACAACTCAGTATTAGATGTCATTCATATTGATCATCGTGAACCAATATACAACATCGATCTTCTACGTCTTGGCATTGGTTCCTCtgccacaaagaaaaaatcttcatCATCCATGTTGAACAAGTTTACATCCAGCAAAGCTGGTTCATAAAACTCAGGCAGTGTATTCCAAATGTACTGTGAGAACAGCTCCATTCCATCACAGGCCAAATGGCCATATTCATTCATTACATTCCATAACTCTGTCATGCCAGCAAGAGCTTGCTCTTGTGTTTCATTCAACAGCTGTGAAAACACTTCAGCCTCAGTTTTAAGACATTGGGTAGTTGACATCAGAAAATCTCCAGCTTCAGAAAGTTGAGAAACTAAACAGTTGTTGGTGATTAATTCATTCACTCTGTCTTGTGCCAGCTCTACCACAGTATGAAGAATTTTATCCGGTGTATAATCGGAAAGCATATCTGTTGCATCCTTCCATCTTTCCTCTGCAGCATGCCACAATGCACGAGAAATGCTGTCTCCGTTTTCACAGACACCAATTGAATTGCATCCAGTACTTGTGTCAGAGAAACAGTTGCTTAGCGGTAAACTCAAGGCTGACTCGCAAATCCTTAAAACCTCACATTCACTTGAGCTAGTTGAGTTATTTTCGCCAAATATTTGCTGTAATTGCGTTCTTCCGaaggacaaaattttttcagcgGTGACTTCAAAGCAACAGGGTTTTGAGTCCAGACTTTCTGTGGTTATTCTGCCTTGAAGATGTAATCCGCAACCCTTCAGCAGCGACTGATTTGCTAGGCTAAGTAACTTAGAGGTTAAAGATGATGTTCCTCCAAAAGCCAGTCTAGAAATGGGCACACTGCGAGCGACATTGTATATCTTCATCAACTGACCCACCAAATGTGAAATGAGTGCTGATTCGCCACACATCGAACAATTCGCAAACAACAAGCTTAGATTCGACTCTGTCGATAGAATTACCGTTTCGCTGGTACAAGACATCTTtgaaaaagccttttttcttttcagcttttgCGGAAGAAGGAAGATGTTATGTAAAAATTGTCTCGTGACAGCACATTCTGAGGAAGATGAAACTGcttgtttacaaatttattttaagttagGCAAGGTTACAATGCTTCCTTGTTTCCCAGTTCTCTGTCGGTTGAATAAGCGCCTGACCCTTTTTGCACATTCAGAATCGCGAAAATGGCTTCTGACGAAGGTAACCCAAACGGCACTTTGATCATCGATGGAAGTGTTATGGAAGGGGGAGGTCAAATCCTTCGGAATGCAGTCAGCTTCGCATGCCTGTTGAATTCTGCAGTTTGTGTTCAGAATATCAGAGCTGGAAGGTCTGCACCAGGATTAAGAGCTCAACATATGACCGGACTGCAACTGGTGCGAGATGTTACTTCTGGTAAACTTGAAGGTGACAAAATTGGTTCCACTTCGGTCTCTCTTCATCCAGGCAGTATTGGTTCTGGGATATTTTTAGCAGATACTCATACAGCTGGGAGTGTTTCTCTGCTTATGCAGTTGGCTCTTCCTTGCCTTCTATATGCTCCTGAGACATCTAAGTTAATACTTAAAGGAGGAACAAATGCAGAAATGGCCCCACCTATTGATTACATGACAGATATTTTGAGACCAGCTATAAAAAGACTGGGTGTAGACTTTGATTGTGAGATTGTAAAAAGAGGTTATTATCCTAAAGGAGGAGGAGAAATTCATGTTACAGTAAACCCCGTCAAACAGTTGAAGCCATTACAGTTACTACAAAGAGGAACATTATCCAAGATTACAGGTCGTGCTTATGTTGCAGGTGTTTTACCTTTCAAGATGGCCCAGACTATGGCTGAAGTGGCCCATAGAATGTTGAAGGAGAAGTACCCTGATGTGCAGGATATTGAGATAGAACCAGATAAAGAACCTGGAGACAAGGCACATGGAAGTGGATCTGGAATAATgCTCATGGCTGAATCCTCTACTGGATGTAGAATTGCTGGATCAGCAATTGGAAGGAAAGGTGTTTCTCCACAGGAGGTTGCAGGAAACGCAGTTGAGGAGCTGGCAAATAATCTTCAATATGACAGTTGCATTGATGAACATCTTCAGGATCAGGTTGATTGTGTAGAATTATAAACATACACATTTTACTTTGTAATTCTAACAATCCAATTTAAGTAACTCTCCCTGCTGATTGCCTCACATTTCTTATAAATAAGATaggagaatttagtgttttaTCAGGATAACATCCTCCTACTGATGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01137 all species →	RTC	RNA 3'-terminal phosphate cyclase	Domain	Interproscan
PF05189 all species →	RTC_insert	RNA 3'-terminal phosphate cyclase (RTC), insert domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020719 all species →	Conserved_site	RNA 3'-terminal phosphate cyclase-like, conserved site	Interproscan
IPR036553 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase, insert domain superfamily	Interproscan
IPR037136 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase domain superfamily	Interproscan
IPR017770 all species →	Family	RNA 3'-terminal phosphate cyclase type 1	Interproscan
IPR000228 all species →	Family	RNA 3'-terminal phosphate cyclase	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan
IPR023797 all species →	Domain	RNA 3'-terminal phosphate cyclase domain	Interproscan
IPR013791 all species →	Domain	RNA 3'-terminal phosphate cyclase, insert domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11096 all species →	RNA 3' TERMINAL PHOSPHATE CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003963 all species →	Molecular Function	RNA-3'-phosphate cyclase activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01974	RTCA, rtcA; RNA 3'-terminal phosphate cyclase (ATP)	EC:6.5.1.4	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.