Gene detail

Detailed information of RMX52007.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1706:81247...89052
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00003693

CGATGTTTCAAGATGGAGGTCGGCGACGAAATCCGCGAGAGACAGTATGAAAGCAGTTTGTTGCTGTTGGCGGACGAACTAATTGACATGGTGCTATCCTGCCCTTTAATAGATCATAAGGACTTATGCTGCTGTGCTCAAGTTTGCACACGTTTGAACACTATTGCAACTGGAAATGAACTGTGGAAGAGGAAGGCCCTCTCTAGATGGCGGTTTTGGAAAAGCATGCCCAAAGAAAACTGGTGTGCAGTTTACAGAGACAGGCTGTTAACTGAACTTAAAATCCTTTCTGCTTTAGAGAGTATgtcaaagaaatattacaaCAACCCTGAGGTTCACAGGAGAGAGTTTGACACATTTGTGTATTTAGGAAATGAAAATCCTGTCATGTCGTGTCATGTAAACAATACTCTGAGTGAacttttacaaggaaatgattgTGAAGTCAATTTGACACACAGACACTATGCCAGAAAAGTACAATCccagctgaaaattttttctattaaGGACGAGTGGAAGAAATTTCTGGCATtacaagaacaacaacaacatcttGAGAAAGGTGCTATGTTGGTTGTAAGATGGATTCTCAATGAAGAGGATATAAATGAGAATGAGACTTTCTCAGAACTTGATAGAATTGCACAGATGGTAAAGGAGAATCTGCATGGCTCCAACAGCAGTACACACACAGCACCCTTAATCCCGCTGGAGGAGCAAATGACACAGAGTAATGAGGGGCTGACCTCAGTTACACATCCTGCAGCTTGTTTGAGAATATTGGCTTGTCTGAAGCAAGTTTTGTATCATCAGCTTCAGTTTAAAGGCTGTGTGGATGAATATTATAAAAAGGAGAACTCGATGCTCTTTCAGgttgttaaaaatagaactGGTAATCCCATCACTTTGTCAGTTTTGTTCACTGCTCTTGCAAGGAGACTTGGGGTTACATTAGAACCAataaattttccaaatcattTCTTGTTGCGGTGGAGATCTAACATGGACCCAAAggcAGATCCTTCTACAGTATATAGGTACATTGACTGCTTCAATGGTGGAAATTTCTTAACTGAAGCTCAATGTGTGGATATGCTTTTATCACCCTTGGCAAATGTACGAAGTTTTGGTAATGCACTGTTTGTTAGGGCTTCGCCTACACAGGTATTTATTCGCATGGTGGCCAATATCATAAATAGCTACAGAATGGAAGAACACCCAGGTGGTCGatTGAGTGGTCTGCATTCTGCTCTTGACCTGATGCTGTTTCTTGATCCTAATGATGAAGACAGCAGACTGCTGTTGGCCAGAATACAGGTTCATCTAGGTATTGACTTAGAAgagGCAATTGACAGTCTTCAGATCCTACAGAGCAGTGCAAACCAAGTGCGTAAGGGAATATTGGATAATCTCCTTGAacgagccaatcagaaaaagagaatgcAGGATTTGGGAGAAAATCTTCCCCCTCCAAAACTAAGATCTGATCCAAGGAATTCTCAAGTTGGATTTAAAGTTGGAATGGTGATGAGGCACAAGCTGTATCATTATGGTTGTGTTATTTATGGATGGGATCCTGTTTGTGAAATGGATGAGTCCTGGATTCAGCGAATGGGTGTTGATCAATCACCTGGTGGCCGCAATCAGCCTTTTTACAATGTGCTGGGTGATGATGGCTCACAAAGATATGCTGCACACATTAATCTGAAAGAAGATCCTAATCAGCCTTTGAACCCCCATCCTGAACTTGGAAAGTACTTCAAAGGTTTCACCGGAACCAGATACATTCCAAATGAATGTCTTCAATGCCAGTACCCTGAGGATGTTGACAATTGATCTAAACTTAACTATTCATTtcaacaaaacatattttcaatgaaatatctGTGTACTTAAGGAAAACACTCTCATCGATATGATGTTATGTGCAATATTATATCCCTACACAGATTGGTTTTTATAAACCATAAATTCCAAGATTTTCTCTggtgaagggctaacactcagctttcatattctttatggtggccaatttatattaccctattatactctcccaccaacacagtaccacagtttctttaga

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08755 all species →	YccV-like	Hemimethylated DNA-binding protein YccV like	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF13369 all species →	Transglut_core2	Transglutaminase-like superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011722 all species →	Domain	Hemimethylated DNA-binding domain	Interproscan
IPR036623 all species →	Homologous_superfamily	Hemimethylated DNA-binding domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR032698 all species →	Domain	Protein SirB1, N-terminal	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31350 all species →	SI:DKEY-261L7.2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10301	FBXO21; F-box protein 21	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.