Gene detail

Detailed information of RMX52051.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1706:752105...763889
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00003774

GTAAGACCAACATGGCGGAAAAACATGCTCTTCACGAAAGTGATGAGGGTTATGCCGAAAGTGGGTACGAAAATGGTGGTTTCAAGCGGCAGAAACTTGCGTCAGGCGAGGCTCATAGAACGTATCAGGCTGGAGGTGGTGGGAATCCGCACTATACGGATCCCTCGCCAGTCATTCATGTGCGTGGGGTTGCTGATGAAGCCCGCGAACAAGATTTGATGCACGCTTTGTCAACATTCGGTTCAATCAGTTGTGTGACAATGATGCCGAAATTGCGACAAGCGTTAGTGGAATTTGACGAGGTTTCATCAGCAAAATCTCTGATGGATTATACACAGGGTGGACAGACAATTGTGCTTAGTGGAAGACCTGCTTACttcaacttttcaaaaagcaaGAGTATTTCCAAAAACCTGCATATACAGCAAGAGCTTCCCCCAAACAGAATACTTTTGATCACCATTATTAACCCTCAATATCCCATAACAACAGACATTCTGCACACAATCTTCAGTAAACAAGGCCAGGTATTAAGGATTGTCATTTTCAGGAAGAGTGGTTTGCAGGCCATGGTTGAATTTGCTACTGTGGACCAAGCCCAACAGGCTAAAGATGTTTTAAACAGTGCTGATATTTACACTGGCTGTAACACACTGAAAATAGAATACTCAAGGgcTACGTCACTGAATGTGTACAAGAACGATGAAGAAACATTTGACTATACTGAAGACAAAGCACATGGTGCTGTTGGAGTGAGACCGCCTATGAAAGAAGGTCTACTAAGTCGCCCCCCAGGCGGGCCATATCCTGGCCGAGGGGGAATGGTGATGCGCGGGCCCAGGCCTTTGCTACAGCAGTCACCTATGGCAGGAGGTTGTGTTCTGATGGTGTATGGACTACATCAGCACAAGATGAACTGCGACAGagttttcaatattctttGTTGCTATGGAAATGTCCTCAAGGTGAAGTTCTTGATGAATAAGCCTGGAGCAGCCATGGTGGAGTTGAGTGACCACGTGGCCTGTAACACTGTCATTCAGTGTCTGAGGAACCAGCAACTGTTCGGTGAACAGTTAGAGTTCAGtTTTTCCAAGCAAAAGTACCTTGTAGATGCGTCGACTGTCTCAGATTTGCCAGACGGAACTCCATGTTACAAGACTTACACAAATTCCAAGAATCAAAGGTTTTGGACACCGGAACAAAGCAGCAAGAATCGTATATTTTCTCCAACGAAagtattacatttttttaatgcccCGCCAGactttgaaacagaaaaagtgaCAGAGATGTGTTCAAATTGTGGCGTGGAGCCGCCCGTTGCTGTTAAAGTCTTTCCAAATGCCTCGCGGTCAGCGGCAGGTCTGTTAGAATGGAACAGCCCGTCCCAGGCCCTTGAGGCACTGGCAGCGTGCAATCATTACGTGATTCGTGATCCAGctgCAAAAACCATCTTCACTGTTAAACTTGCCTTCTCGTCCATGTCCAGCGCCCAGTGAGAGAAAAGTCAAAAGCGACCTGTCCCTCCCCTGACGTATTGTGTTAAGCGACCCTGTCGGAGGGTTGGAAAGTAACCTACTTAGGATCCTAGCAAGAAAAGATACAGAATTTCatctaaaagaaaacgaaaaattgaGATTTATTTTGGAGTCATTATTGTCCAAgtattttaggaaaaaagttaaaactatTACCATGTTATTTGAAGTAGAtgtgtttgtttactttttaagagttttatttGCTACTTGGTAGTATTAGATGGAAGATTAGTCCTTATATCCCATAGAGAGTTCACGatgttttttgtaaaattgttcCTTCTAGTAAAGAGAAGCGTGCGCTTTAATTTGGTAGAGATCATGTCCTTCTGCAAAGTTGAAACGCTGTGACAGGTCTGTGTGAcaaactgcaaaataacaaaattttcttcccaaAGCAAGAAGCAGCGACGTTTTTGCAGTCGGGATCATCGTACACAAATTCGTGCGACTTATTGCGTTGATAATTGATGTCGCAGTGATAggttttttacaaaatttttcatgtcacaCCTTGTGAATTGACGCTGAGACTTTTTCCCTCCTATTGTCGCAACGACCGGTCGCTTGCTACCTGATTACTAATATGTAGGCCCTAATTTGCAATCCggttgtcttgtttttttttaaattttttttatttttttctgaaggtAAGGGATAGAAATGAACACACACCAAAAAAATGGCTATGCTtagaaaatgcattttctttgattgtcATGTGACTGTATATTTCCTAGGTTACGTGGATGTTTTTGCGCAGGCTCATTCCCAGACAGCGGCTGGTAATCGAGTCTAACCCCCCATATTTCGTCACTCGGGAGTTACTAGACGATATTCACTTTGCCattagagaaaatttataaaagatTTTGAGTTAACTCTCAAATTCACGTACAGCTTTTGTATCGGAAATTGTGTTACATCGGCTATTTACGCAACCCTCTTACTGCTGTTGAAACGGTAACCTCGTCAAATAAAACGACTTAGTTGAACAGGTCACTATATCACCATGATTCTTGTGTGGGCAGTAATCCGTGCAAAACATAGTGATTCCTCATTGCGGAGCATTCGTTCACGCTTTAGAAGGAGTGAATAAAATGCCAACGTTCCACTTACAAAGCCCAacttttataataatttgactttaaccctttatcagccagaagtgattaacatgtaactt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13893 all species →	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592 all species →	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043484 all species →	Biological Process	regulation of RNA splicing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13159	HNRNPL; heterogeneous nuclear ribonucleoprotein L	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.