Gene detail

Detailed information of RMX52127.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1700:22143...28987
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00015155

aaaaatttcaagatggcggctgGGCTGTCAATGATGCATCTTTAAATTGTTTCCATTTGGTAGCGTCtgcattataaaaattgttatggATAACCAAAGAATAGGGTCCTTAAACTCTCTGGCAGATTATGGACTTGGTGAGAGTGATATTGAAGACTCTGATGATGAAGTAGAACCGGAAAACAAGCCGATTGTTACGGCGAGACCTTCGGTTTCCCAACCGTACGTTACAACAAGTGCTCGGTTAGTCTCCtatgatgatgaagaagaaaaaggggAAGAGCCTAAAGATGAGGTAATTGATGAAGACCCAGAGACTGTTGAAGAGACTGTCAGTGATGAAAAAGTGATAGATAAAGATGTTACTGATGAAGATTcctctcaagaaaaaaatactgctCAAGTTGCTTTGACAATCAGTGACTTATCAGAAATGGTGCAATCAGGAGAAAAAGATGATTCTattgTTGAGGATCTCACCACAGAAACATCAAACTCAATAACTGACATCAAGATGCCGCAGTTACCACCTGAACCTACTGGCCGGTGTTCCAACGCTCTCCAGGATAAGATTCGATCACTGTTAGAAAAGACACACCAAGAAAAGCTTGATTTAAACACCAACATACAAAACAGGAAAGATTATAGAAACCCAAGTATCTATAAGAAGCTCTTGCAATTTCTCAACATTGATGAAACTGGTAGCAACTATCCAAAGAGTTTGTTCGATCCAACCTGTTGGCCTGAGGAGTCTTACTATGAAAGCTTATccaAAGCTCAGAAAGAAGCTTAtgagagaaaggaaaaggaaaaagcaaagcaaGCAAGAACACAGGTGGAATTTGTGTCTGGGACCAAAAAGTCAGGTGCAGAGGAaccaaagaagagaaaaagcaaatggGATGTGAGCGCAGCCCCAGCACCTCCTGTCAAAACCGCAACTCCACCAGTAAAACTTGGAGCACAGGGATCAGTTGTCTCCTCTTCTATTGACATTAGTGCTGCCAAAAAGCCAAAGGTTTCTTGATGGTAGCAGTCTCAGGCAGAAGGATCAAGTCAATCTTACAGAGACAGCTAGAACAGCATTAACAAATGCAGTTTATTTCTCAAACTGTTTTGAGGAAACACTGCAGGAGGTCGAagattttccttgtaaatctATGGACATGTACATTAATCTGTTATTTTACATTGTATATCAATAAATATTagatgaaatcaaaattttcactctTGAAGATACATGGCAGATACAATCTCTTTCTCAAAGCTACTTGACTTAAGTAGTTCTAAACTTGAGCGAATTTGGAGGTTTCTTCCTGAAGTCTTTTGATTACTtctacagttttttttatttaaggaaTGATGGCAGTTCAGCAGACCTTCACTTCCTACCCAAACTTTCCTCTGGTGCACCATTCCCCTTCTTCCAGGATCAGGAGATGACTGAATGGATGGAGATTTTTAGTCGCCATGTACACGAgcaaccaaaaataaaattaatcatgacaattacaaattattcaaatattattgGTGTAttcacagctttttttttttttttttttcagattacagaccgaattggactccactaggtcctattaccattacatatatgtatattaCCAAAAAATTACTGCTGAggaagaaattgtttcttcattatgttttaaaaaattttgagggAGAAGCAgacttttaatttatcatcttAGTTATTTCATATGTTAAAAACTCTTAATATGTTTGTTGACCAGCAGCAGTTTAAACAGTGGTATCTGTGAAGTATCCCACTTGCGGCCGGGCTATGGATGTTGAATGGTTTGTGAAATTTCTCACTCACATAAGTAGGATTAATGATgaaatttagtattatttataatactttattaatttattttcatgatttataTTAAGTAGGATTAAGTTTGGTTACGCACTCATGCGCAAAATTATCAAGGTGTCTGACAGGCAGCCAGTTTCACTGGCGCAGAAGCTGGGTAACACGATCACAGTGATCGTAATTCCTGGAATTCTTAACAATTTTGCAGCAAAGTGTAGTTGTAACTTAAGTTCCTTTAAAGTAGAAGCAGAGAGACGAGTTTGGCCAGACTGTTGAGCATGAAAACatcgttttgaaaataacGATGAAACTTTTACCAAAAACAGAGTTGTTTACGAATCAAGACTAAACTTGACGAAATAAGCAGATGGAACCACAAGAgatagaagaaaaatgttcattcCACGTTCCGAAGTCATAATGTGTAGAAGCTTCT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005071 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07818 all species →	HCNGP	HCNGP-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012479 all species →	Family	SAP30-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13464 all species →	TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26267	SAP30BP; SAP30-binding protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.