Gene detail

Detailed information of RMX52264.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1673:425981...441357
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00007964

ATGCAAGCTTCAGATGCAGAGTGTCCGTTGTGTATGGAGCAGTTGGAAATCGACGATGTCAATTTCTTTCCTTGCACTTGTGGATATCAGATCTGCAGGTTTTGCTGGCATCGGATAAGAACAGATGAAAATGGCTTATGTCCTGCTTGTAGAAAGCCCTACAGTGAAGATCCTGCAGTGTATACACCCCTTTCACAAGACGAAATACAGAGAATTCTGAAAGAGAGGAAACAGAAAGATGTACAAAGAAAACAAAAAGTAACTGAGAACAGAAAACACTTAGCAAATGTGAGAGTTGTACAGAAAAATTTGGTATTTGTTGTTGGACTAACTCAAAGATTAGCAGATCCCGAGCTTCTTAAAAGACCAGAGTACTTCAGCAAGTTTGGAAAAATACACAAAATAGTTGTGAATAATAGTACAAATTATGCAGGTCCCCAGGGACCCAGTGCTAGTGCTTACATTACATATGTGAAAGAAGAGGATGCAATTAAAGCAATAATAGCTGTGTGTAACACTCATCTTGATGGGAGAACATTAAAGGCTTCTTTAGGGACAACTAAATATTGTAGTTACTTTCTCAGAAACATACCATGTCCTAAAACAGTAAGTAAAAACCTTGGACTAGTTCATTGTGATAAGGTAATTGGTTTAAAACATCAAGAATATGAACAGCAGTTAATTGCTTTTTATTCAAAGAAAGTGGGTCTTAGCAGTGATAAGGATAAAAATGAAGAATGGCCGGTTGATGATGGTGGTGAATACAGATTGTCTCCTCGTCTAACATCAGAAGCAGCATGGGCTGGCAAAGATGAGAATGGAGAAGGAGATACCTGTCAAAGTACTTTAGAAAATGAAGGTAGTTCAGTTGCAGAAAGAAAGGAGGAGGAGGACTGGGAGGAATCTTGTCTCCCATCTCTGACTAAAACTGCAACAGAAAATAAGCCATCTGACACCATAAGACAAGAAAAACCTGCAAACCATCCACAGTCAACCTACAGCAATACAGGTTGGGGAAATACAGAAAGTGCTGGACGCGTTTTAGATACTTCCAGTCTGTTCTCTGCTGATCTGTGCAGTGGTCTGGGCCTGTCTAATTTACATCTGAAAGTTTATGGGGAAGATGATTTAGGGTTTGATCCTTGGAATGAGTGCAGTAAAGGTTTGGCAGATCTTCTTCAAGAAGAAAACAAAACAACTTTGCCTGGACATACTCTTCACACTTCCACAGCTTCACAATCACAAAGTTTCTTCCCAGGATTTCCACCAAATAGTGATGATATTAAAAACTGGCAAGATGGACTTAGAGCACTTCTACCAAACATAAACATTAATTTCTCAGATTCTCAGTTACCTCAACAACAATCTTCTTGGTCTCATTCTGCACCTCTGACAGAAAGTCATCCACCTAACTGGCCTTTTTCTTCACAGCAAACGCAAAACCCATTCCAAGGTCGCCCTCCTCCAGGATTTGAATGTAAATCACCCACGAGCCACCACATGCCGATGCTTGATGATCCAGGTAATCCTCAAGGGAACAATCCCCTTACTAGACCAGTTTCTAATGGATATCCTGGAATGCATCCTTTTAGGAGACAAGCAGATCTTCAGAGCACTGCGGCAGTCTCGTCAGCAGAGAAGCTGAAGGAAAATTCATGTAACGAATCCTCACAAGAGGAGGTGATCTCTAGTACAAGAACAAAAGAATTACTATCAGTCTCGGAGCCTTCAGGGGATAATGTAACAAATGCAATGACGGAAGGAACTCACAGAGTTGACATTTCAGGATTACCAAATTGTATTGAACAGCACAAAACAAGAGTGAGTGAGTTATCCATCATTGACGTAAACGACCCTCTTCCAAGTCAATGTGGTAATTCATTGTTGGAGCACAAGACTGAAAAGAAAAAACGGGACAGCAGAATACAGGAGACTAACAGACAGTACAAACAAAATCAAGGAGTATATAAGAGAGATGAGAGACACTCTCAACAAAGTAGACATTCAGGTACCAAGAGCAGACATACTGAGACACCTGGAGGCTTTATAAGGAAACAAACTCATTCTTTTCAAGACAGAGACAATTCCCAAGTGAAGGCAGGTCCTTCGCAATATTGCAATAAGAGAAGAAGAGATATTACAAGTGGATCTGTGGGACAGAGGAATTGTATTGGGAAAGAGAAACAAAGCACAAGCTTAAATTGA

Transcript

rna-pdam_00007964

GTCGTGATATGACAAGcgaaggaaaggaaattggGCAAGAGGGCAAGAGTTTATACACAAGAAATAGAAGTTGCCTGCTTCATCTCTTCTTGTATTTGGGGATTTCTGAATCGTTCGGAATCTCAGGGAAAGAAGAACTCGCTCTCCATCGAACGCACCGACAATTTCCGCCGACATTTTCTGTTTCCGGTGAGACGTTTAGAAAGTTGTCTACTTCGGCCCGCCAAGAAATTAACTACAATACTTTGTAGACCGAATTGCCTTTTGTTTCTGCGACTAAACTGTCTACCTAGACggctttttcaaaatcatcatGCAAGCTTCAGATGCAGAGTGTCCGTTGTGTATGGAGCAGTTGGAAATCGACGATGtcaatttctttccttgcaCTTGTGGATATCAGaTCTGCAGGTTTTGCTGGCATCGGATAAGAACAGATGAAAATGGCTTATGTCCTGCTTGTAGAAAGCCCTACAGTGAAGATCCTGCAGTGTATACACCCCTTTCACAAGACGAaATACAGAGAATTCTGAAAGAGAGGAAACAGAAAGatgtacaaagaaaacaaaaagtaactGAGAACAGAAAACACTTAGCAAATGTGAGAGTTGTACAGAAAAATTTGGTATTTGTTGTTGGACTAACTCAAAGATTAGCAGATCCCGAGCTTCTTAAAAGACCAGAGTACTTCAGCAAGTTTggaaaaatacacaaaataGTTGTGAATAATAGTACAAATTATGCAGGTCCCCAGgGACCCAGTGCTAGTGCTTACATTACATATGTGAAAGAAGAGgaTGCAATTAAAGCAATAATAGCTGTGTGTAACACTCATCTTGATGGGAGAACATTAAAggCTTCTTTAGGGACAACTAAATATTGTAGTTACTTTCTCAGAAACATACCATGTCCTAAAACAGTAAGTAAAAACCTTGGACTAGTTCATTGTGATAAGGTAATTGGTTTAAAACATCAAGAATATGAACAGCAGTTAATtgctttttattcaaagaaagtGGGTCTTAGCAGTGATAAGgataaaaatgaagaatggCCGGTTGATGATGGTGGTGAATACAGATTGTCTCCTCGTCTAACATCAGAAGCAGCATGGGCTGGCAAAGATGAGAATGGAGAAGGAGATACCTGTCAAAGTACTTTAGAAAATGAAGGTAGTTCAGTTGCAGAAAGAAAGGAGGAGGAGGACTGGGAGGAATCTTGTCTCCCATCTCTGACTAAAACTGCAACAGAAAATAAGCCATCTGACACCATAAGACAAGAAAAACCTGCAAACCATCCACAGTCAACCTACAGCAATACAGGTTGGGGAAATACAGAAAGTGCTGGACGCGTTTTAGAtaCTTCCAGTCTGTTCTCTGCTGATCTGTGCAGTGGTCTGGGCCTGTCTAATTTACATCTGAAAGTTTATGGGGAAGATGATTTAGGGTTTGATCCTTGGAATGAGTGCAGTAAAGGTTTGGCAGATCTtcttcaagaagaaaacaaaacaactttgcCTGGACATACTCTTCACACTTCCACAGCTTCACAATCACAAAGTTTCTTCCCAGGATTTCCACCAAATAGTGATGATATTAAAAACTGGCAAGATGGACTTAGAGCACTTCTACCAAACATAAACATTAATTTCTCAGattcTCAGTTACCTCAACAACAATCTTCTTGGTCTCATTCTGCACCTCTGACAGAAAGTCATCCACCTAACTGGCCTTTTTCTTCACAGCAAACGCAAAACCCATTCCAAGgtCGCCCTCCTCCAGGATTTGAATGTAAATCACCCACGAGCCACCACATGCCGATGCTTGATGATCCAGGTAATCCTCAAGGGAACAATCCCCTTACTAGACCAGTTTCTAATGGATATCCTGGAATGCATCCTTTTAGGAGACAAGCAGATCTTCAGAGCACTGcgGCAGTCTCGTCAGCAGAGAAGCTGAAGGAAAATTCATGTAACGAATCCTCACAAGAGGAGGTGATCTCTAGtacaagaacaaaagaattaCTATCAGTCTCGGAGCCTTCAGGGGATAATGTAACAAATGCAATGACGGAAGGAACTCACAGAGTTGACATTTCAGGATTACCAAATTGTATTGAACAGCACAAAACAAGAGTGAGTGAGTTATCCATCATTGACGTAAACGACCCTCTTCCAAGTCAATGTGGTAATTCATTGTTGGAGCACaagactgaaaagaaaaaacgggACAGCAGAATACAGGAGACTAACAGACagtacaaacaaaatcaaggaGTATATAAGAGAGATGAGAGACACTCTCAACAAAGTAGACATTCAGGTACCAAGAGCAGACATACTGAGACACCTGGAGGCTTTATAAGGAAACAAACTCATTCTTTTCAAGACAGAGACAATTCCCAAGTGAAGGCAGGTCCTTCGCAATATTGCAATAAGAGAAGAAGAGATATTACAAGTGGATCTGTGGGACAGAGGAATTGTATTgggaaagagaaacaaagcaCAAGCTTAAATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF14570 all species →	zf-RING_4	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034261 all species →	Domain	CNOT4, RNA recognition motif	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039515 all species →	Domain	NOT4, modified RING finger, HC subclass (C4C4-type)	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039780 all species →	Family	CCR4-NOT transcription complex subunit 4	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12603 all species →	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10643	CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.