Gene detail

Detailed information of RMX52398.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1652:118426...137069
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00019571

ATGCCTGTACCGAATACTCCAAACGTGGTTCTTAACTTTCTTCTTCGCCGGGCTAAATTTTGTTGTCATGGGAGAACTTTTTCTACACTAGACAAAAGAACGATCAGGTCTTCTCACATGAACAGTGCAAATGGAATTGCGTTTCGATCTGAGTTAAAAAGAAAAGCAAAAAGGGTCGTGGTTAAGCTTGGATCAGCTGTTATCACTAGAGATGACGAATGTGGTGTCGCTCTCGGAAGACTTGCCTCTATCGTTGAACAAGTGTCTGAGTTACAGAATAGTGGTAGGCAAATGCTTCTGGTTACAAGTGGTGCTGTAGCTTTTGGCAAACAAAAACTTCGACATGAGATACTTCTCTCTCAGAGTGTTCGACAAACACTCAAGCCACAAGATGTCCTGAAGTCAAGGCCTTATATTGAACCAAGAGCATGTGCAGCTGTAGGTCAGGGAGGATTGTTGTCACTCTATGAAGCCATGTTTCAGCAGTATGGCCTGACTTGTGGACAGGATGTATCTGATAAATACTCACTGGATAATTTAAGGTCAACAGTGGAGGAGTTAATTTCCATGAACTGTATTCCAATAATAAATGAGAATGATGTTGTGGCATCACCACCAGGCATGGATCTAGATTTGGCTGGGGTGATAAGTGTAAAGGACAATGACAGTTTATCTTCCTTGCTCTCAGTGGAACTGAAGGCAGATTTGCTGTTGATATTATCAGATGTGCAGGGCATTTACAGCGGCCCTCCTGACTTGCCCGAGTCTCGCCTTCTGGACACATTCAGGCCAGCGGACGTCAGTAATATTGAATTTGGAGAAAAGTCACGTGTTGGCAGAGGAGGCATGGAGTCTAAAGTGAAGGCCGCAGCCTGGGCACTAGAGAGAGGTACGAGTGTTGTTATAGCCAATGGTACTGGCAGTGACTACGTCATTCGTGAGGTTCTGGATGGCCGGAAGGTTGGAACATTCTTCACTATGGTCGACGAACCAGGGCCATCTGTAGAGAATCAGGCTGCGGCAGCTCGAAAGGGAGGAAGAGCTCTGCAAGCACTGACCGCTGCCCAGCGGGCCAGAATCATTTACAAGTTGGCTGACCTTCTAATCGAACGCAAGGATCAGATTTTAGACGCTAACTCCAAAGATCTGGACCATGCTCGGTTTGAGGGACGACTACCGGCTCCCATGATGGCCAGATTGCTTTTGACGCCGTCCAAACTTGAAAATCTTGCTCAGGGACTGAGACAGATTGCGGATTCCTCTCACAACATCCTGGGTCGTGTTCTTAAACGAACCAAAATCGCTCAAGGTCTAGAACTGAAACAGGAAACTGTTCCAATTGGAGTTGCCTCTCTAGCTATCAGCACAGGCAATGGTTTGCTTCTGAAGGGTGGCAAAGAAGCTTATCACAGCAACAGATGTCTTCACAGTCTTGTTGCAGAGGCTCTGTCGATGTACGTTCCTCCGGAAGCTGTTAGTTTGTACTCGAGAAGAGTGGTGGATTCCAAATGCGATTATCCTGCAGCTTGCAATGCTATGGAGACTCTTTTGGTACACAGGGATCTCATAAGGTCACCATTTCTGGAACGGATGCTGAAGGCTCTTAGAGAAAAAGGAGTGATAGTTCACGCCGGACCCAACTTAGTGAAGACTTTACCGCTGGCTCCAGCTCCTGCTAAGACCATGAAGAAAGAGTACAGTGGGTTAGAGTGTACGGTGGAAGTGGTAAGGACCACAGAGGAAGCCATTGATCACATCCATAAATTTGGAAGCTCACATACTGATGTCATTATCACCGATAATGGAGAGACTGCTGATCACTTTCTGAAGGCTGTGGATAGTGCATGTGTCTTCCACAACACAAGCACGAGATTTTCGGATGGGTATCGCTTTGGCTTGGGTGCTGAAGTAGGTATCAGCACGGGTCGTATCCATGCCCGGGGTCCTGTGGGTGTGGAAGGATTACTGACCACCAGATGGGTGATGACTGGTCAGGGGCACACAGTGGCTGACTTTGCTGAAGGAGGCCTGCTCAAGTATCTTCACGAGACCCTCCCAATTGAAGACGCTCCTCAGGATTCTACTGATGAAGAAACGACTTCTGACAATGGCGAAAGCGAAGTTATACAGAAATAA

Transcript

rna-pdam_00019571

ATGCCTGTACCGAATACTCCAAACGTGGTTCTTAACTTTCTTCTTCGCCGGgctaaattttgttgtcatgGGAGAACTTTTTCTACACTAGACAAAAGAACGATCAGGTCTTCTCACATGAACAGTGCAAATGGAATTGCGTTTCGATCtgagttaaaaagaaaagcaaaaagggTCGTGGTTAAGCTTGGATCAGCTGTTATCACTAGAGATGACGAATGTGGTGTCGCTCTCGGAAGACTTGCCTCTATCGTTGAACAAGTGTCTGAGTTACAGAATAGTGGTAGGCAAATGCTTCTGGTTACAAGTGGTGCTGTAGCTTTTGGCAAACAAAAACTTCGACATGAGATACTTCTCTCTCAGAGTGTTCGACAAACACTCAAGCCACAAGATGTCCTGAAGTCAAGGCCTTATATTGAACCAAGAGCATGTGCAGCTGTAGGTCAGGGAGGATTGTTGTCACTCTATGAAGCCATGTTTCAGCAGTATGGCCTGACTTGTGGACAGGATGTATCTGATAAATACTCACTGGATAATTTAAGGTCAACAGTGGAGGAGTTAATTTCCATGAACTGTATTCCAATAATAAATGAGAATGATGTTGTGGCATCACCACCAGGCATGGATCTAGATTTGGCTGGGGTGATAAGTGTAAAGGACAATGACAGTTTATCTTCCTTGCTCTCAGTGGAACTGAAGGCAGATTTGCTGTTGATATTATCAGATGTGCAGGGCATTTACAGCGGCCCTCCTGACTTGCCCGAGTCTCGCCTTCTGGACACATTCAGGCCAGCGGACGTCAGTAATATTGAATTTGGAGAAAAGTCACGTGTTGGCAGAGGAGGCATGGAGTCTAAAGTGAAGGCCGCAGCCTGGGCACTAGAGAGAGGTACGAGTGTTGTTATAGCCAATGGTACTGGCAGTGACTACGTCATTCGTGAGGTTCTGGATGGCCGGAAGGTTGGAACATTCTTCACTATGGTCGACGAACCAGGGCCATCTGTAGAGAATCAGGCTGCGGCAGCTCGAAAGGGAGGAAGAGCTCTGCAAGCACTGACCGCTGCCCAGCGGGCCAGAATCATTTACAAGTTGGCTGACCTTCTAATCGAACGCAAGGATCAGATTTTAGACGctaactccaaagatctggACCATGCTCGGTTTGAGGGACGACTACCGGCTCCCATGATGGCCAGATTGCTTTTGACGCCGTCCAAACTTGAAAATCTTGCTCAGGGACTGAGACAGATTGCGGATTCCTCTCACAACATCCTGGGTCGTGTTCTTAAACGAACCAAAATCGCTCAAGGTCTAGAACTGAAACAGGAAACTGTTCCAATTGGAgTTGCCTCTCTAGCTATCAGCACAGGCAATGGTTTGCTTCTGAAGGGTGGCAAAGAAGCTTATCACAGCAACAGATGTCTTCACAGTCTTGTTGCAGAGGCTCTGTCGATGTACGTTCCTCCGGAAGCTGTTAGTTTGTACTCGAGAAGAGTGGTGGATTCCAAATGCGATTATCCTGCAGCTTGCAATGCTATGGAGACTCTTTTGGTACACAGGGATCTCATAAGGTCACCATTTCTGGAACGGATGCTGAAGGCTCTTAGAGAAAAAGGAgtgaTAGTTCACGCCGGACCCAACTTAGTGAAGACTTTACCGCTGGCTCCAGCTCCTGCTAAGACCATGAAGAAAGAGTACAGTGGGTTAGAGTGTACGGTGGAAGTGGTAAGGACCACAGAGGAAGCCATTGATCACATCCATAAATTTGGAAGCTCACATACTGATGTCATTATCACCGATAATGGAGAGACTGCTGATCACTTTCTGAAGGCTGTGGATAGTGCATGTGTCTTCCACAACACAAGCACGAGATTTTCGGATGGGTATCGCTTTGGCTTGGgTGCTGAAGTAGGTATCAGCACGGGTCGTATCCATGCCCGGGGTCCTGTGGGTGTGGAAGGATTACTGACCACCAGATGGGTGATGACTGGTCAGGGGCACACAGTGGCTGACTTTGCTGAAGGAGGCCTGCTCAAGTATCTTCACGAGACCCTCCCAATTGAAGACGCTCCTCAGGATTCTACTGATGAAGAAACGACTTCTGACAATGGCGAAAGCGAAGTTATACAGAAATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00696 all species →	AA_kinase	Amino acid kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019797 all species →	Conserved_site	Glutamate 5-kinase, conserved site	Interproscan
IPR001057 all species →	Family	Glutamate/acetylglutamate kinase	Interproscan
IPR001048 all species →	Domain	Aspartate/glutamate/uridylate kinase	Interproscan
IPR020593 all species →	Conserved_site	Gamma-glutamyl phosphate reductase GPR, conserved site	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR005766 all species →	Family	Delta l-pyrroline-5-carboxylate synthetase	Interproscan
IPR036393 all species →	Homologous_superfamily	Acetylglutamate kinase-like superfamily	Interproscan
IPR000965 all species →	Domain	GPR domain	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11063 all species →	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004349 all species →	Molecular Function	glutamate 5-kinase activity	Interproscan
GO:0006561 all species →	Biological Process	proline biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0004350 all species →	Molecular Function	glutamate-5-semialdehyde dehydrogenase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12657	ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase	EC:2.7.2.11 EC:1.2.1.41	Arginine and proline metabolism	ko00330	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.