Gene detail

Detailed information of RMX52662.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1598:169326...171746
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00004211

ATGGATGCAGTTTTAGCAAACGAAGCTGATCTAAATTCCATTGTCAAAGAATATCTGGATTATCTGGGATATTCGAGGACATCGTCTGCATATGAAGATGAGTTAAATTCGCTAGGAAAACAGTTAAATCAGCTAATCACACCAAGAAATGACTCGCAGAAAACTGAAATTCAGGATAAATTGTTGTCAGCCTTTGCTGATGGAAGATACGCAGAGTTTTTCAGAATATGGGAGGATTGTATCCCCGACAATGTTCAAGAAACTGACCGTGTCTGCCAGAAGCTGGTCTTCAACATAAATATTTACTTCGCACTCTTTCCCATTCTTCACGGTAACCACAACAAGCGAGAACTGGAGCGATCAATGCAAATTTTCAAGTCGTATCTTGAAACTAAAGGAGCTGCTTTAAGCCAGACAACAGAGTTCCTTCCCTATTATGCATTGCCATTTATTCCTGACCCTACGTCTCATCCATCTTTTAAACCACTTTTTGCCAGTTCATGGAGTTCTGATCTCAAGAGAGACTTGCAAGTATTTCTTGCAGCAACTCTTAAGTCAGAGGAAAAGCCACAGCTCTATACTTTGTTTATGAGGAATTCCACAGAGATAGAGAGAGAAAGAAAACTGCACAATGAACAACTCAAGAAACTACAACTTCAGCTGACAGCAAAGGAACAGAGATTTGCCCAATTTGAAAAGAGATACCTTAAAATACAGGGTGATTACCATAAGCTCATAGGTGTTGCCGCTGAATTGGTGGACTCACTGGAGGATGCTGTCCGCGGAAAAATGGTGACACCAGAATACCTTCAAGACATTTGCATGAGGCTCTTTTCTCCCTCTGTTAGAGAGTCTTTAGATGTTAGCAAGCCAGGAACAGCAAGTTCAATGCTAAGGGCATCTGTTGTCAATGATGAACTTCCTAGTCTTTCTGCAAGTGTGGATGTTCCATACAAACAAACTCTTGACTATGATAAGATAAAGATGAACCTGCTTTCTCTGCCTGAAAGGAAGAAAGCGTTTCTGTTACAGGCACTGAGGTGGAATCTGACCCAAGCACCTACCCGTGAACAACGAGACAGCATTGTTAATGCATACATTATCCATGATTTGCTTGGCTGCTCTCTTGACAGCCACTTGAGAAGTGGAATACTAGACCTCCTGAATTCACCAAATGAAATAGTTAGACAATACTTGGCAAGGTTGTTCAATGCCTTTGCGTCTCTCTCAGCAGGCCGCTCTTATTTAGCACAGAATCAATCCATTGTGCATGCCTTACTGTCAGTCCTAAAGAAGGAATCAAAAACATCCCTCACCAGTGAAAACATTCTGGGGACCTTGCAGAAGCTTAGCCTACGAAGGCAAATGCAGTCTATGATGATCAATGGTGAAGTGATTCAGTGGCTGTCTCAGCTATTGATGGACCATGACAATCTATCAGACTACACATTGGAGTATTCAGTTGCTCTGCTTATGAACCTCTGTCTACGCTCTGGAGGGAAGAGAAAGTGTATCAAAGATGCTTCTCAAATTCTGCGAGTTTTAAGTGATCTCTTGGGGCATGAGAATCAAGAGATACGTCCGTATGTGAATGGTGCCCTGTACAGCATCCTAGCTTTACCTGCAGTGAAAGAGGAAGCTAGAGCACAAGGAATGGAGGAGATCCTTGAGTGTTTCCTGAAAGATGACAACCCCGATATGACCAGACAGATCCAATTTATCATCAAACAACTCAACACTGATGATCCATCTGCAACAAATGACCCTGAGTCTGATGACGAAGATGAGGAAGATGACGATGATGAGGGAGACGCTATTGATGCTGAGCTGGATAAACAAGAAATTCTTGAACCAAATGAAGGAGAGCTGTTTGGTGATGAGCTACTCAATACTTGTTATGCAATGCCAAATTCTAATCTATCTCAGCAGCCAAAGAACAAGAAAAAGTTTCCAGTTCCTCTTGACCCCAATCACCCTCTAACAAGACCCACCACTCCTGGAGCAAGAGGGACAGATGCTTTGCAGGATAATACTCCCCAACCATTAACTTCCACAATACGACCAAAATCTGGACAACAGAGCAGGCCAACAACATCATCTAAATCAAGGCATGGCTCAAGACCAACAACGAATGGAGCAGCAGAGGAGAGGCCTTCAAGTACCAGGCAAGGAGCAAACCCAACCCCTTCTGATGGAAGTTCAAGGCCACCCCCTCAAGTGGTTGAGCCTCCTGCAGACTCGAGGCCCAGAACTAGCACTCCACCACCTTTAGGACGATCAGCCTCCCCTCCCAGACCATCTTCAAAGGATGGCAGGCCTGGGACATCATCATCAAGGAAAAGCAGTCACTCAAATAAACAGTAA

Transcript

rna-pdam_00004211

ATGGATGCAGTTTTAGCAAACGAAGCTGATCTAAATTCCATTGTCAAAGAATATCTGGATTATCTGGGATATTCGAGGACATCGTCTGCATATGAAGATGAGTTAAATTCGCTAGGAAAACAGTTAAATCAGCTAATCACACCAAGAAATGACTCgcagaaaactgaaattcagGATAAATTGTTGTCAGCCTTTGCTGATGGAAGATACGCAGAGTTTTTCAGAATATGGGAGGATTGTATCCCCGACAATGTTCAAGAAACTGACCGTGTCTGCCAGAAGCTGGTCTTCAACATAAATATTTACTTCGCACTCTTTCCCATTCTTCACGGTAACCACAACAAGCGAGAACTGGAGCGatcaatgcaaattttcaagtcGTATCTTGAAACTAAAGGAGCTGCTTTAAGCCAGACAACAGAGTTCCTTCCCTATTATGCATTGCCATTTATTCCTGACCCTACGTCTCATCCATCTTTTAAACCACTTTTTGCCAGTTCATGGAGTTCTGATCTCAAGAGAGACTTGCAAGTATTTCTTGCAGCAACTCTTAAGTCAGAGGAAAAGCCACAGCTCTATACTTTGTTTATGAGGAATTCCACAGAGatagagagagaaagaaaactgcacAATGAACAACTCAAGAAACTACAACTTCAGCTGACAGCAAAGGAACAGAGATTTGCCCAATTTGAAAAGAGATACCTTAAAATACAGGGTGATTACCATAAGCTCATAGGTGTTGCCGCTGAATTGGTGGACTCACTGGAGGATGCTGTCCGCGGAAAAATGGTGACACCAGAATACCTTCAAGACATTTGCATGAGGCTCTTTTCTCCCTCTGTTAGAGAGTCTTTAGATGTTAGCAAGCCAGGAACAGCAAGTTCAATGCTAAGGGCATCTGTTGTCAATGATGAACTTCCTAGTCTTTCTGCAAGTGTGGATGTTCCATACAAACAAACTCTTGACTATGATAAGATAAAGATGAACCTGCTTTCTCTGCCTGAAAGGAAGAAAGCGTTTCTGTTACAGGCACTGAGGTGGAATCTGACCCAAGCACCTACCCGTGAACAACGAGACAGCATTGTTAATGCATACATTATCCATGATTTGCTTGGCTGCTCTCTTGACAGCCACTTGAGAAGTGGAATACTAGACCTCCTGAATTCACCAAATGAAATAGTTAGACAATACTTGGCAAGGTTGTTCAATGCCTTTGCGTCTCTCTCAGCAGGCCGCTCTTATTTAGCACAGAATCAATCCATTGTGCATGCCTTACTGTCAGTCCTAAAGAAGGAATCAAAAACATCCCTCACCAGTGAAAACATTCTGGGGACCTTGCAGAAGCTTAGCCTACGAAGGCAAATGCAGTCTATGATGATCAATGGTGAAGTGATTCAGTGGCTGTCTCAGCTATTGATGGACCATGACAATCTATCAGACTACACATTGGAGTATTCAGTTGCTCTGCTTATGAACCTCTGTCTACGCTCTGGAGGGAAGAGAAAGTGTATCAAAGATGCTTCTCAAATTCTGCGAGTTTTAAGTGATCTCTTGGGGCATGAGAATCAAGAGATACGTCCGTATGTGAATGGTGCCCTGTACAGCATCCTAGCTTTACCTGCAGTGAAAGAGGAAGCTAGAGCACAAGGAATGGAGGAGATCCTTGAGTGTTTCCTGAAAGATGACAACCCCGATATGACCAGACAGATCCAATTTATCATCAAACAACTCAACACTGATGATCCATCTGCAACAAATGACCCTGAGTCTGATGACGAAGATGAGgaagatgacgatgatgaGGGAGACGCTATTGATGCTGAGCTggataaacaagaaattcttGAACCAAATGAAGGAGAGCTGTTTGGTGATGAGCTACTCAATACTTGTTATGCAATGCCAAATTCTAATCTATCTCAGCAGccaaagaacaagaaaaagtttccagTTCCTCTTGACCCCAATCACCCTCTAACAAGACCCACCACTCCTGGAGCAAGAGGGACAGATGCTTTGCAGGATAATACTCCCCAACCATTAACTTCCACAATACGACCAAAATCTGGACAACAGAGCAGGCCAACAACATCATCTAAATCAAGGCATGGCTCAAGACCAACAACGAATGGAGCAGCAGAGGAGAGGCCTTCAAGTACCAGGCAAGGAGCAAACCCAACCCCTTCTGATGGAAGTTCAAGGCCACCCCCTCAAGTGGTTGAGCCTCCTGCAGACTCGAGGCCCAGAACTAGCACTCCACCACCTTTAGGACGATCAGCCTCCCCTCCCAGACCATCTTCAAAGGATGGCAGGCCTGGGACATCATCATCAAGGAAAAGCAGTCACTCAAATAAACAGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003335 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21050 all species →	ARMC9_ARM	LisH domain-containing protein ARMC9, ARM repeats	Repeat	Interproscan
PF21051 all species →	ARMC9_LisH	ARMC9, LIS1 homology motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048959 all species →	Domain	LisH domain-containing protein ARMC9, ARM repeat domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR048957 all species →	Conserved_site	ARMC9, LIS1 homology motif	Interproscan
IPR040369 all species →	Family	LisH domain-containing protein ARMC9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14881 all species →	LISH DOMAIN-CONTAINING PROTEIN ARMC9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0097542 all species →	Cellular Component	ciliary tip	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22864	ARMC9; LisH domain-containing protein ARMC9	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.