Gene detail

Detailed information of RMX52868.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1560:74237...91989
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00016244

ATGATAGTGACAAAAATAGCCGGCACATTACTTAGAAGGAGAAGACTTCCCTTTCGACTGACTAACAAGACTTCATTTCTATTCTCCAAAATGCCTCCAACTATTAGAGTAAACGATCCTTTAATTGACTCCACAGACGTGGCAGCAGAAATAGAAGCAACCTTAAAGCAAAGAATAATGATCCTTGATGGTGGAATGGGGACCATGATCCAAAGTTATCATTTGGAAGAAGAGGATTTTAGAGGAGAAGAATTCAAGAATCATTCACACAATTTGAAGGGAAACAATGACTTCCTAAGTTTAACGAGACCAGATATTATAGAGGAGATTCACAGGGGTTACTTAGAAGCAGGATCAGATTTTATTGAAACCAACACTTTCAGTGGAACATCAATTGCACAAGCAGATTACGGAACTGAAAACTTGGTGTACAGATTAAACAAAACATCAGCTGAAATTGCTAAGAAGGCAGCCATTGAGGTTGCTGTTGCCACAGGAGTGAAAAGATATGTGGCTGGTGCAATGGGTCCCACCAACAGGACACTTTCAATCTCACCTAGTGTTGAAAATCCAGGATACAGAAACATCACCTTTGATCAGTTGGTAGAGTCCTATGCAGAACAAGCTAGAGGACTTTTGGATGGTGGTTCCGATGTTCTTATGGTGGAAACAATATTTGACACAGCAAATGCTAAGGCAGCATTATTTGCTATTGAGCAGCTCTTTGAAAAGGAATACAAGCCAGTTCCAATATTTGTGTCAGGCACAATTGTGGATAAGAGTGGTAGAACACTATCTGGTCAAACCACTGATGGGTTCGTGATCAGTGTGTCCCACTCCAAGCCTCTGAGCATTGGACTCAACTGTGCCTTAGGAGCTACTGAAATGAGGCCATTCATAGAAGCAGTGGGCTTGTGCACAACATCCTATGTTCTCTGTTATCCTAATGCAGGACTGCCAAACACTTTTGGAGGTTATGATGAAACACCAGAGATGACAGCAGAACATTTAAAGAATTTTGCTAAAGATGGTCTTGTGAACCTTGTGGGAGGCTGTTGTGGTACAACACCAGCTCATATCAAAGCAATAGCTGAGGCAGTTAAACCTTTCAAACCAAGACCATTACCAGAAGATCATTATGCTAATGCCATGAATCTTTCAGGTCTTGAACCCATGAGAATTACACCAGACACCTTGTTTGTAAACATTGGGGAGCGTTGCAATGTTGCTGGGTCTAGGAGATTTTGCAGGCTGATTAAGGAAGGGAAATTCGAGGAAGCACTAGCTGTAGCTAAGCTGCAGGTGGAGAATGGCGCCCAAGTTTTAGATATTAACATGGATGAAGGCATGTTGGATGGAGTGTCGTCCATGTCAAAATTTGTCAACTTGATTTCGTCAGAACCAGAAATTGCAAAGGTCCCTCTCTGTATTGACTCGTCCAACTTTGACGTGATAGAGGCTGGGCTCAAGTGCACTCAGGGAAAATGTATCGTGAACAGCATCAGCTTGAAAAACGGAGAGGAAGACTTTTTGGAGAAAGCAAAGATCATCAAACGTTATGGTGCTGCTGTTGTAGTGATGGCATTTGACGAGGAAGGACAGGCTGCAGAATTAGAAGACAAGATCAAAATTTGCACTCGTTCTTACAACTTACTGGTGTCCAAAATAAACTTCAACCCCAATGACATCATCTTTGACCCAAACATTCTCACAGTTGCCACAGGAATGGAAGAACACAACAACTATGGAAAGTACTTTATTGAAGCCACCAGGGCTATAAAGCAAACCCTTCCAGGTGCAAGAGTCAGTGGTGGCCTCTCCAACTTTTCCTTCTCATTCCGTGGAATGGACGCAATAAGAGAAGCCATGCACAGTGTATTCCTGTACCATGGGATTAAGGGAATGGGCAAAGGAGCGAAGAAACAGGTAACCACAGATGAATGGAGAAATGGAAACGTGGAAGAGAGGTTGGAGTATGGCTTAGTGAAGGGCATCGACAAATTTGTGATAGAGGATACCGAGGAGGCCAGGCAGGTATGGGAGTGGTTGGAGATCTGTTTGGTGCAGGAAAAATGTTCTTACCTCAGGTAG

Transcript

rna-pdam_00016244

ATTTTTGATTGGTAATATCACGATGCTGAGTAAAAATACTTGCCAAACTGACCATTCATACCAGGCCTTAGATTCTTCTACATATTGCCTAACCTTAGTACCCAAGCTCCGTTAATTTGCGCAATTTACCATGGCGGGACGGATAGATTTATATGATAGTGACAAAAATAGCCGGCACATTACTTAGAAGGAGAAGACTTCCCTTTCGACTGACTAACAAGACTTCATTTCTATTCTCCAAAATGCCTCCAACTATTAGAGTAAACGATCCTTTAATTGACTCCACAGACGTGGCAGCAGAAATAGAAGCAACCTTAAAGCAAAGAATAATGATCCTTGATGGTGGAATGGGGACCATGATCCAAAGTTATCATTTGGAAGAAGAGGATTTTAGAGGAGAAGAATTCAAGAATCATTCACACAATTTGAAGGGAAACAATGACTTCCTAAGTTTAACGAGACCAGATATTATAGAGGAGATTCACAGGGGTTACTTAGAAGCAGGATCAGATTTTATTGAAACCAACACTTTCAGTGGAACATCAATTGCACAAGCAGATTACGGAACTGAAAACTTGGTGTACAgattaaacaaaacatcagctGAAATTGCTAAGAAGGCAGCCATTGAGGTTGCTGTTGCCACAGgagtGAAAAGATATGTGGCTGGTGCAATGGGTCCCACCAACAGGACACTTTCAATCTCACCTAGTGTTGAAAATCCAGGATACAGAAACATCAcctttgATCAGTTGGTAGAGTCCTATGCAGAACAAGCTAGAGGACTTTTGGATGGTGGTTCCGATGTTCTTATGGTGGAAACAATATTTGACACAGCAAATGCTAAGGCAGCATTATTTGCTATTGAGCAGCTCTTTGAAAAGGAATACAAGCCAGTTCCAATATTTGTGTCAGGCACAATTGTGGATAAGAGTGGTAGAACACTATCTGGTCAAACCACTGATGGGTTCGTGATCAGTGTGTCCCACTCCAAGCCTCTGAGCATTGGACTCAACTGTGCCTTAGGAGCTACTGAAATGAGGCCATTCATAGAAGCAGTGGGCTTGTGCACAACATCCTATGTTCTCTGTTATCCTAATGCAGGACTGCCAAACACTTTTGgaggttatgatgaaacacCAGAGATGACAGCAGAACATTTAAAGaattttgcTAAAGATGGTCTTGTGAACCTTGTGGGAGGCTGTTGTGGTACAACACCAGCTCATATCAAAGCAATAGCTGAGGCAGTTAAACCTTTCAAACCAAGACCATTACCAGAAGATCATTATGCTAATGCCATGAATCTTTCAGGTCTTGAACCCATGAGAATTACACCAGACACCTTGTTTGTAAACATTGGGGAGCGTTGCAATGTTGCTGGGTCTAGGAGATTTTGCAGGCTGATTAAGGAAGGGAAATTCGAGGAAGCACTAGCTGTAGCTAAGCTGCAGGTGGAGAATGGCGCCCAAGTTTTAGATATTAACATGGATGAAGGCATGTTGGATGGAGTGTCGTCCAtgtcaaaatttgtcaacttGATTTCGTCAGAACCAGAAATTGCAAAGGTCCCTCTCTGTATTGACTCGTCCAACTTTGACGTGATAGAGGCTGGGCTCAAGTGCACTCAGGGAAAATGTATCGTGAACAGCATCAGCTTGAAAAACGGAGAGGAAGACTTTTTGGAGAAAGCAAAGATCATCAAACGTTATGGTGCTGCTGTTGTAGTGATGGCATTTGACGAGGAAGGACAGGCTGCAGAATTAGAAGACAAGATCAAAATTTGCACTCGTTCTTACAACTTACTGGTGtccaaaataaacttcaacCCCAATGACATCATCTTTGACCCAAACATTCTCACAGTTGCCACAGGAATGGAAGAACACAACAACTATGGAAAGTACTTTATTGAAGCCACCAGGGCTATAAAGcAAACCCTTCCAGGTGCAAGAGTCAGTGGTGGCCTCTCCAACTTTTCCTTCTCATTCCGTGGAATGGACGCAATAAGAGAAGCCATGCACAGTGTATTCCTGTACCATGGGATTAAGGGAATGGGCAAAGGAGCGAAGAAACAGGTAACCACAGATGAATGGAGAAATGGAAACGTGGAAGAGAGGTTGGAGTATGGCTTAGTGAAGGGCATCGACAAATTTGTGATAGAGGATACCGAGGAGGCCAGGCAGGTATGGGAGTGGTTGGAGATCTGTTTGGTGCAGGAAAAATGTTCTTACCTCAGGTAGGAAGAGCAAATCCACTCCGTTTCAAAAACATAAAGGGACAGACTAATAAGGAAggactgactgtctgactgaccaactgactggcTGACAGGCTGACaggctgactgactgactaattgaCCGACTGATAATTGACAgtttaataattcatttctCTGAAGCACACCGTATAATAACAAATCATACTGCGTTCAACAGGTTATTAAGTCAGCTCGTGTCATGAAGAAAGCTGTGGGTCACCTGATCCCATTTATGGAAAAGGAGCGCGAGGAGAAACTGGCCGAGCAGGGAGTTGGGCCCGAAGATGACCTCTCGAGCCGATACAATGGAACAATTGTCTTGGCTACTGTCAAAGGGGATGTACACGATATTGGCAAGAATATTGTGGGAGTTGTGTTGGGCTGCAACAACTACAGGGTTATTGACCTTGGTGTGATGACGCCGTGCGAGAAGATCTTACAGACTGCGATGAAGGAAAAGGCCGACATCATTGGTTTGTCAGGTCTAATTACTCCGTCACTGGACGAAATGATTCACGTCGCCAGGGAGATGGAGAGACAAGGTCTCAAAATACCACTGCTCATTGGAGGAGCAACAACTTCcaggACGCACACGGCTGTGAAGATCGCTCCGCGTTACACGGAGCCTACAGTCCATGTTCTCGACGCTTCCAAGAGTGTTGTGGTGTGCTCAGCGTTGATTGATCAGAACGCTAAGGAGGACTTCATGGAAGAAATCAAAGAGGAGTACGAAGAGATTCGAGACGAGCATTACGATTCTTTGAAGGATCGCAAGTATGTGTCCCTTGAGAAAGCCCGCACGAAGAAGTGCAATCTGGACTGGGTTGACTTCACTCCAGGTTATTACTTAAAACTGCTTTACAAACAACTTGAAAtgcGGCCTTCGTTCTTGGGTGTCAAGGTGATCGATGATTGCGGTTTGAATGATATTATTCCTTACATTGACTGGAAACCTTTCTTTGATGTATGGCAACTTCGAGGAAAGTATCCCAACAGAGGTTACCCTAAAATCTTCCAGGATAAAACAGTCGGCGAAGAagctaaaaaattgttcaacgATGCCCAAGACATGTTAAAGACGATCCTTGAGAAGAAATCACTTCAACCGACTGGAGAAGTGGCTTTTTTTCCAGCTAACAGTGTCGGTGATGACGTTCACATCTTTGAGGACGACAACAAACGAGAGGGTTCCCCACGGGCTGTGTTCTATGGCTTGAGACAACAGGCCGAAAAGGAGCATGGTGTAGAAGACCCATACCACTGTCTGTCTGACTTTGTAGCACCGCTGGACTCAAATATCAAGGACTACGTCGGCTGCTTTGCTGTATCTATTATGGGCGCCGAGGAGATGGCTAAAAAATTTGACGAGGATCTGGACGATTACAGTGTTATTATGGTAAAGGCACTTGCTGACCGCTTAGCCGAAGCCTTTGCAGAGGAACTTCATGAACGTGTGCGCAAGGAATTATGGGGTTACTGTAGCGATGAAGTTCTGGACGCGAAGGACTTACACCGAATCAAATACCAGGGAATTCGTCCGGCACCGGGTTACCCAAGTCAACCGGATCATACAGAGAAAAAGACCATGTGGGATTTAATGAACTGTGAGAAATTAACTGGAATCAAGTTGACAGAGTCGCTGGCCATGGATCCCGCTGCTTCAGTATCGGCGGTTTTCTTCGCTCATCCTAAAGCTGTTTACTTCTCAGTGGGAAAAATCTGCGAAGACCAGGTGAAAGATTATGCGGAACGAAAGGGAATGCCAATTGAGGAAGTCGAAAAATGGTTATCTCCTATCCTCTCCTACGACAGAGACTAAACGCAAACAGAATGATATATATCGAGATAAACGCGAGTCGCCGTCTCGTTCACGTACTCAATCTCATTCCAAGATGATGCTCTTGAGAGCAACCTATCCTTCGCAGACCTGATGTGCACGTGCTTTTCCAGCGGCGTATATTTTTGCGCACGTTATGGGATCGTGTTCTACACGGAAATGGGCAAATAACATTAAGGACTGGAATCTTTGTAAATGAAAGCTAAACTCTATAGGAAACGCTTGATAGGCGGAGTACTAAGTATAAAAGTATCAATTATTTTGGTTCAATCCTCAAAAGTCTATTTAAATTATAATGCACTACTGCAAGGCATAACGGGTTTTCTGGGCTATGTCAGCGTTATATCCTCTGACGAGGTGAGTTTagtaaaatgaagtaaatGTTTTCGAAATGCACGATGTTGGTAACTATCCGTAATGGATTACTGTGATCGAGGAGTTCGCTATGTAATAGTTTacctttgaaaatatgttttgtggGAAGTATTATACTGAAACTGCTTATAGCATCGTGGTATTTAACAAGTATGATTAATAACCTTAAACTTGAACTTTCAGAATTTCAAACATGTTCCTTCTCCCGCCGTTTCAGTTCTTAAAATCTTGCAAGTAGACACTGGAAACAGGCTAGCGTATCGGCAAGAAGGTGTTATCTCGTTATAACACTAaacagtgttaaaaaaaagcgtAGCGAAAGGAGAAGGTAGATAGGAATGGAGAATTCATGTTATTTAAGGTTAATGATATTCTTTATTGTACATCATAATACGTTTATATCGTGGCTCCGATTATTAAGCACAACAGCCCTTGCATAAACTCCAAATGATTTAAGTATGTTGCGTGGAGTACCATTTGTAATTATAGCCACTGAGGATAATGATTACTCTTAAGTAATAAACTTCTgtataaaaacaaca

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02574 all species →	S-methyl_trans	Homocysteine S-methyltransferase	Family	Interproscan
PF00809 all species →	Pterin_bind	Pterin binding enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050554 all species →	Family	Methionine Synthase/Corrinoid	Interproscan
IPR003726 all species →	Domain	Homocysteine-binding domain	Interproscan
IPR011005 all species →	Homologous_superfamily	Dihydropteroate synthase-like superfamily	Interproscan
IPR000489 all species →	Domain	Pterin-binding domain	Interproscan
IPR036594 all species →	Homologous_superfamily	Methionine synthase domain	Interproscan
IPR036589 all species →	Homologous_superfamily	Homocysteine-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45833 all species →	METHIONINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008705 all species →	Molecular Function	methionine synthase activity	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0046653 all species →	Biological Process	tetrahydrofolate metabolic process	Interproscan
GO:0050667 all species →	Biological Process	homocysteine metabolic process	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0042558 all species →	Biological Process	pteridine-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX52868.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.