Gene detail

Detailed information of RMX52870.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1560:101420...118429
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00016246

TCTCCCACGGTCGACCTCGCTTGGAAAATTTTCGAAATCAAGATGGCAGAGGTGGAACGATCTTGGACGGATCAGCAATTGCAAAGTGATGAAGTCTCCAAGAAAGATATCATCAAGTTTTTGCATGAACATGCTTCGTTTGAGTTTCTTAAAGAGCACAAACTGAATGGGAAATTGAACAATATTGCAAAAACCAGCAAAAAGGATCATCTCATTGAAAGTTATAAACAACTTTTTGAAACAAAGTCTTACCGCAAGGAAACTGATGCCAGCTTGGAAGACCAGTTAAAAGAGGCAGCTGAGAAAACAGCAGCCATGCATATCAGTGAGAAGAAGAAGGAAAGAAAGAGTTCAGAATCAAAGGATTCAAAGAAAGAGGAGCCAAAATTCTCCAAGAAAATCTTGAAGCATGGAGATAAGACTTCATTTGCCTCTAAAGGTGACAGAGTGTCTTGTTTCTATACTGGCAAACTGGAAAATGGTGTGGTGTTTGACAGCAATATCTCAGGAGCAGGAGCTAAAAAGAAGAGCCAGGGAGAGGGGAAACCATTTATTTTCCAAGTAGGGAAGGGACTTGTGATTCGAGGGTGGGATGAAGGCCTCATGACAATGTCCAAAGGTGAGAAGGCAGAACTCATCATTGAGCCAGAGTGGGGATATGGAAAGAAAGGAAACATCGATGCCAAGTCGAGCTTGTTGATATCATATGAAGTTGTAAAACTTGGGCTGGAACAGAAGGAAAAGGAACAGAGTGAAGGCAACCTTGGGCATATTAAGATGACATGTAATCTAGCTGTTCCTTTAAACGCGGGTCTGACGGCGGGCCCCCACACACGATGTAATCTTCGTCTTTTTCGCGTAACTTTGGCTTACTACATGACAGAAACTACAGAGGAAATTATTTATGGGGATGGGAATTATGGGGAACACAAGGTAAAGCGACTCAAATCTGTAAAAGATGAAGGTATGACATCCAGTAACAATGACGACATAGACACCATTTATGGTGCGCTGGTAGTTCTTGGTTACAATGGTTCTCTGCTGGATGGAGAACACCAGCGACGTCACCGAAGCTCGTTTATTTTGCGAAAGAAAGGATCCCCCTCAGGAGTGCAACCCTACAAATTGCACCTGGCTTCTTCTAACACTGGAATGCAGATTGTAAATTCTGAAGCCCATAGTGTCTCGTACACTCTCTCCCGTGGTAATGCAGTTGTTGTTGAGTATCGGAGGGATTCAGATACTGATATGTTTCAGATTGGCCGTTCTGCTGATTCTAAGATAGACTTTGTGGTAACTGACACAGCTCCTGGAAATAAACGTCGTGATTTGAACCCAGAAACGCAGAAAAGTACCATCTCCAGATATGCTTGTCGCATTGTCATTGATAGAGAACCACCGTACACTGCTAGGGTGTTTGCAGCTGGTTTTGATAAATCTAGCAATATATTTCTTGGACTGTTACATTGTGATTTTTATCAAAAGGAAAAAGCTCCCAAGTGGCAAAATGAAGAAAATTTAATGGATGGTCTGACGACCAATGGCATTCTGCTCATGAATCCCAAGGGAGGTCCTTCTTGCCAGCCCACAATATGGCGTGAAATATCAGTATGTGGGAATGTGTATGGACTTCGTAGAACACGATCCACCACTGAGAAAGGGAAGACTGTCGAAGATGAGTCCAATGTTTTACTTGATGGATCATTGATTGATCTTTGTGGAGCTGTTTTGCTGTGGAGATCCGCTGAAGCTATAAAGGAAATGCCTACCCTGGAAACAATTGACAAAATGAGGGAATGCCTAAATGCCTCTCGCCCTCAGTGTCCTGTTGGTCTCACAACATTAAGATTTCCCAGTCAATCTGAGCCCTCTAGCAGTGTGATCAATGCACAGCCATATGTGTACCTCAAGTGTGGGCATGTACATGGTCTTCATTCATGGAATTCACCGGAGAGAAATCTTGCTGACAAAAGAACCTGTCCAGTTTGTTTACAGGCCAGCTCTTATGTGCCGCTAACTCTTGGAAAAGAACCGGCTTTCTATCAGGGAGAGCCTGCAGCTACACATGCTTTTGTGCCATGTGGACATGTTTGCTCTGAGGAAACAGTCAGGTTTTGGCAACAATTGCCTATTCCTCATGGATGTGATGCCTTTCAGGCCATCTGTCCTTTCTGTGCTCAGCCCCTGGAGGGTGAAGATGGCTTTGTCAAACTTATCTTCTCGACTGATGAATAA

Transcript

rna-pdam_00016246

TCTCCCACGGTCGACCTCGCTTGgaaaattttcgaaatcaAGATGGCAGAGGTGGAACGATCTTGGACGGATCAGCAATTGCAAAGTGATGAAGTCTCCAAGAAAGATATCATCAAGTTTTTGCATGAACATGCTTCGTTTGAGtttcttaaaGAGCACAAACTGAATGGGAAATTGAACAATATTGCAAAAACCAGCAAAAAGGATCATCTCATTGAAAGTTataaacaactttttgaaacaaagTCTTACCGCAAGGAAACTGATGCCAGCTTGGAAGACCAGTTAAAAGAGGCAGCTGAGAAAACAGCAGCCATGCATATCAGtgagaagaagaaggaaagaaagagttCAGAATCAAAGGATTCAAAGAAagagGAGCCAAAATTCTCCAAGAAAATCTTGAAGCATGGAGATAAGACTTCATTTGCCTCTAAAGGTGACAGAGTGTCTTGTTTCTATACTGGCAAACTGGAAAATGGTGTGGTGTTTGACAGCAATATCTCAGGAGCAGGAGCTAAAAAGAAGAGCCAGGGAGAGGGGAAAccatttattttccaagtAGGGAAGGGACTTGTGATTCGAGGGTGGGATGAAGGCCTCATGACAATGTCCAAAGGTGAGAAGGCAGAACTCATCATTGAGCCAGAGTGGGGATatggaaagaaaggaaacatcGATGCCAAGTCGAGCTTGTTGATATCATATGAAGTTGTAAAACTTGGGCTGGaacagaaggaaaaggaaCAGAGTGAAGGCAACCTTGGGCATATTAAGATGACATGTAATCTAGCTGTTCCTTTAAACGCGGGTCTGACGGCGGGCCCCCACACACGATGTAATCTTCGTCTTTTTCGCGTAACTTTGGCTTACTACATGACAGAAACTACAGAGGAAATTATTTATGGGgATGGGAATTATGGGGAACACAAGGTAAAGCGACTCAAATCTGTAAAAGATGAAGGTATGACATCCAGTAACAATGACGACATAGACACCATTTATGGTGCGCTGGTAGTTCTTGGTTACAATGGTTCTCTGCTGGATGGAGAACACCAGCGACGTCACCGAAGCTCGTTTATTTTGCGAAAGAAAGGATCCCCCTCAGGAGTGCAACCCTACAAATTGCACCTGGCTTCTTCTAACACTGGAATGCAGATTGTAAATTCTGAAGCCCATAGTGTCTCGTACACTCTCTCCCGTGGTAATGCAGTTGTTGTTGAGTATCGGAGGGATTCAGATACTGATATGTTTCAGattgGCCGTTCTGCTGATTCTAAGATAGACTTTGTGGTAACTGACACAGCTCCTGGAAATAAACGTCGTGATTTGAACCCAGAAACGCAGAAAAGTACCATCTCCAGATATGCTTGTCGCATTGTCATTGATAGAGAACCACCGTACACTGCTAGGGTGTTTGCAGCTGGTTTTGATAAATCTAGCAATATATTTCTTGGActGTTACATtgtgatttttatcaaaaggaaaaagctcCCAAGTggcaaaatgaagaaaatttaatggaTGGTCTGACGACCAATGGCATTCTGCTCATGAATCCCAAGGGAGGTCCTTCTTGCCAGCCCACAATATGGCGTGAAATATCAGTATGTGGGAATGTGTATGGACTTCGTAGAACACGATCCACCACTGAGAAAGGGAAGACTGTCGAAGATGAGTCCAATGTTTTACTTGATGGATCATTGATTGATCTTTGTGGAGCTGTTTTGCTGTGGAGATCCGCTGAAGCTATAAAGGAAATGCCTACCCTGGAAACAATTGACAAAATGAGGGAATGCCTAAATGCCTCTCGCCCTCAGTGTCCTGTTGGTCTCACAACATTAAGATTTCCCAGTCAATCTGAGCCCTCTAGCAGTGTGATCAATGCACAGCCATATGTGTACCTCAAGTGTGGGCATGTACATGGTCTTCATTCATGGAATTCACCGGAGAGAAATCTTGCTGACAAAAGAACCTGTCCAGTTTGTTTACAGGCCAGCTCTTATGTGCCGCTAACTCTTGGAAAAGAACCGGCTTTCTATCAGGGAGAGCCTGCAGCTACACATGCTTTTGTGCCATGTGGACATGTTTGCTCTGAGGAAACAGTCAGGTTTTGGCAACAATTGCCTATTCCTCATGGATGTGATGCCTTTCAGGCCATCTGTCCTTTCTGTGCTCAGCCCCTGGAGGGTGAAGATGGCTTTGTCAAACTTATCTTCTCGACTGATGAATaacattgtaaataaaagatctttaaaaaaaagtataacaaTAAATGGTGTACAGCCTCACTGTAGCATTTAGTCTCTATTGACACTAGCTTGCCTAAGTTGATAAcagattaatttatttataaaaaaaaaatagctgaaGATGTatcattgtaattattattattgttataacTTGTCAGCTGTCTCTTTTCTGTTTGGATGCAGCGATTATTTTACAAAGGAGTCATATTTTAAAAGCCACTTAATTAAATGTGTGATGAAGTTCTTCTACATCTATGCAATAAAAAGTGATTCTAGGTGAAGGTAGTTTACATCGATTTCCTCAGCCTGTGTCTGTGACATCTTTTATTGCTCTAACAGCTACTAAGACAGTAGTCAAACGTCTGAGCATG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18410 all species →	BTHB	Basic tilted helix bundle domain	Domain	Interproscan
PF04710 all species →	Pellino_FHA	Pellino, FHA domain	Domain	Interproscan
PF20723 all species →	Pellino_RING	Pellino, RING domain	Domain	Interproscan
PF00254 all species →	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001179 all species →	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR006800 all species →	Family	Pellino family	Interproscan
IPR041200 all species →	Domain	FKBP3, basic tilted helix bundle domain	Interproscan
IPR048334 all species →	Domain	Pellino, FHA domain	Interproscan
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR048335 all species →	Domain	Pellino, RING domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12098 all species →	E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0008592 all species →	Biological Process	regulation of Toll signaling pathway	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX52870.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.