Gene detail

Detailed information of RMX53582.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1422:123475...136578
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004355

ATGACAATATTCTATCCGGGTACCCGGAGGAAAATGAGCTCAAAAGACTTGTACAAACCAGCAAACAGAAATATAGGATTTGACAAGAACGTGTGgGTTGAGTTTACTGCTTTAGCAAGAGACTATAAAGCAGTGAACTTAGGACAGGGATTCCCAGACATGCCCCCTCCTCACTTTGTCAAAGAAGCGCTTGGTAGGGTGGCTGCAAGTTCTGACTTTGCTGTTAATCAGTATACAAGAAGTCAGGGTCACCCAAGACTAGTTAATGCCCTTGGAAAGCTTTACACCCAGTTGATGAAGAGAGCCATTGATCCTTTATCTGAGATTTTAGTCACAGGAGGAGCCTACGAGTCACTGTATTGTTCATTTTTGGGTTTAGTGGATCCTGGTGATGAGGTAATCCTTATTGAGCCATATTTTGACTGCTATGTACCTCAAATATCAGTGGCTGGTGGGATACCAAAGTTTGTCCCTTTGAGGGCTAAAGAAAACGCTACCTCAACAAAGGACTGGATTTTAGACAAAGATGAACTGGAAGCAGCCTTTAGTGAGAAAACCAGAGCCATTGTTATTAACACTCCACATAATCCTATTGGCAAGGTATTCAGTATGGAGGAGTTGCAGTTAATTGCTGATTTATGTAAGAAATACAATGTCATCTGTATCAGTGATGAAGTTTATGAGTGGCTTGTGTATGGTGGAGAACAGCACTTAAGGATTGcTACACTTCCTGGTATGTGGGAAAGGACAATAACAGTTGGCAGTGCAGGGAAGACCTTTAGTATCACTGGCTGGAAGCTTGGCTGGTCAATTGGTCCTAAggaattaattaaaaacttgCAGACAACTCAAGCACAAATTACTTATAACCTGGCAACTCCCACACAGGAAGCCCTTGCCCAAGCCTTTGAACATGAAATTCCTCTTATTGACACAGAAAAGTCATATTTCACAGGACTTAGAAGCATGTTGGAGAGAAAACGGGATGTGATGGCTAAACTACTGACTGAAGTTGGTTTTAAGCCAGTCATTCCTCAAGGAGGTTACTTTATGATGGCTGACACATCAGGCATTGatgtgaactttgatgaaTATGATAAAAGTGATGACCCTCCTGACTATAAATTTGTACGATGGTTGACAAAAGAGAAgGGAATTGCAGCTATACCTCCATCAGCTTTCTATTCCCTTGAACATAAATACATGGGAGCCAAATACATTCGATTCTGCTTTATAAAGGAGGACAGTACTTTAGAGAGTGGAGCAAAAAAGCTTAAGGAATGGAAAGCTGAATtggggaaatgaaaattagtgTAAAGGTCAGATCTGAAATAAAGTAGTGTAATCtcacatttttaaatactgGGGTACATCAAAGTAATTCCTGAATTCAGCATGTGTGAACTTGAGTCTTGCTCATGCAGTCTAGTGTGGCAAGGCCCGTCATTGGTTGAACTGTAGCTGTGTGGATCTTTGGTGCCAATCTGCTAAAATTAATGgctttaaatgttgttttggaTTTAGCTTGGCACAGAAATAGGATGAAATTTGGAACTGAGTCATCATTGGTCACTAGTAAATAGATATTATCTCAGTCTCAACACAACCAAGTTCAGGAAGGTGTTTTGAGATCTTTTGGTTAgtgattaaaacaaagaactggTAGCTAAGGGAAACTGAAAGCAGCTCAACAGTTTTCTATCACCTAGCGATGGTCTCAAGTAAGGCTCAGGCATCTTGCGGCGTTGTGAGGCATTCACATTCTTTTCCAAGTGATGTtcacaatgttttaaaacattcaatAAAATCTGCACAGGCTCTTTCCGCATGGTCAGTGCAAATTTCTTGTGTCCTATTGCAATGAGTGATTCATAGAAACCATGGAAATTAAGAGAAGCACGGCCTGATTCACAACCTGGATGACGACGACTCATGTTGATGAACATTATGTCAAATGAAGCAAGAGTGAAGCCGAAATCTGTCAAATGACATCTCCTTGCCATCATTCTAAAGGAGGTAGGTCCCATCTTGTTGGATGTGCGCACCCCTACAAAATGTCTGAAAAGTGTCGCACATCTTTCCACTACTCTGAAATGATCTAAATGGGAAGCCAGTTTGGGATAAATTTGGTAAAGACAACCTGACTTTTCTGGTAGTGTGTCCCTGGAAGAGAAAGGTTGATAAAAAGTTCATATAAACTgaatttctgaattttcatGATTGTGTTAAACAGCACACAGCATGTTATACTAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR051326 all species →	Family	Kynurenine--oxoglutarate transaminase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43807 all species →	FI04487P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016212 all species →	Molecular Function	kynurenine-oxoglutarate transaminase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00816	CCBL; kynurenine---oxoglutarate transaminase / cysteine-S-conjugate beta-lyase / glutamine---phenylpyruvate transaminase	EC:2.6.1.7 EC:4.4.1.13 EC:2.6.1.64	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.