Gene detail

Detailed information of RMX53663.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1415:1726825...1745671
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00000448

ATGAAGAGGTTTCTTGAGGTTGTCATTGTATTAACATACTTGTTTAGTGCAGTAGTTACAGAAGATCCCCCAGGAAAATGTCAACGTCGGATTTATCAAATCACAGGGAATTCTGGTGTTATTAAGTCCCCTGGTTACCCGAAGAGCTACAATCCTCTTCAAACCTGCATATGGCGTATTATTGTAAAGAAGGGCTACAGGATCCATCTTTATTTTGATCCACATTTTGATGTAACCAGGACAAAAGCATGCCGGGAAGAGTATGTAATGGTCAGCACTCGACGCCAGAGATTTACCTACTTCAACGTTGTTAGGACTAGTAAGGACTCCGTGGTGTTTTGTGGAGACCAGAAACCAAGCAACGTCACATCCCCTGGAAATGAAATGTGGGTACGCTTTAAGTCAAGATATGGTGGCCGAAGAGGTTTCAAAGCTTGGTTTGGAGCAGAAGACATAGACGAGTGCTCGGAATTTGCGAAAGGAGGCTGTCATCATGACTGTTTGAACACCCCAGGAAGCTTCAGATGTACCTGCAGATTGGGATACCATCTTTCACCAGATAGAAAAAGATGCGTTGAGGACATTGTGATTTCCTTCTCAAAGAGGCGTTACAACGCATCAGTAGAAGCAACAGCCCCACCCGGTACATCCATTATTACAGTGCATGCCAACACTGGAAACTCCAAACGATCGCTTCGTTACTACATCATCTCTGTGAACGGCAAACGCGTCAGAGCCAAAACCCGCACACGGTTTGACATGGATCCAGAGATCGGTACTATTTCCATTCGCCGTAAACTCAAGATAAACGCCGTTTATCGCCTCAGAGTTAAGGCACGTTATAGAAACGTATCGTCCAGTTATGCCATGGTCATAGTCAGAGCAACTTCTCCCCTAAAGAAACCCCGCCTTAGCGCTGACGAGGGGTTGAAATTCCCCAGTCCAATATATTCAGTCATTATTCCTTACACCATGATCGTTGGACAGACTATATTGCACCTAAGAGCTGAGAAAAGCGAGGGCCTAACAAATTCTTCCATACGGTACAGAGTTCAGTCTGTCGATCCGTTCAATCGTAGCCCTTTCTTCAGTCTTAACCCCATCAAAGGTTCCCTCAAGATCGACAGGGATCTGACAGACCTCATATCTGGTGAGAAACCAGCCAACTTTGTGCTTCAGGTCATTGCCAGGGCTCAAGAGAATCCAAACGTATTTGCGTCTACGCAGGTGTCAATTGTTATAGTTCCAGAGTATGCTGGTAATAACTATGTCAAGTCTTCTATGGAGGCTGTTAATAATAGGTCTTTTATCGTGCTGAGCTCTGACCGTTTGCGATCTCACAAGAACGCCTCCTTTTACAACAAAAAGAAATCTTCGAGAGGTCGAACAGAATTCTCTCTACATCGTCTGTTTCGGCGACCATCCCTTGAAGCTCAAAGAATTTCCAACGCAGACTTAAAGTTCAACAAAATAATCAGGGAAATTAAGCGTGAAGTGGCAGATGACCTGATTGTAGATGAACGTGCACGATCAGGTGTGGTATCGGTGAGACTAGGCCCAAGCACCGTTGCCTCAGCCAACAGATTGTCCGACATCATCGAAGAACTAAACTGCTCCATGCCTACAGCCGATTGCTCCGACACTGAGTACCATTCACGCTACCGAACCTTTGATGGTACCTGCAACAACCTTGATAACCCTCTTTGGGGCGCAGCAACCACACCATACACTCGGATGTTAGACCCAATTTATTATGATGTAAATGGCTTATCAGATCCCGCAGGATTTCCAGATCAGCCGTATGCACCTGAGCTTCCTTCGCCACACCGTGTGAGTAAAGAATTCATCATTCACGTAACCGAGGCTAGTGGAAACAAAAACCGATATTCGCACATGATGATGCAATGGGGACAGTTTTTGGACCATGATCTCTCCTTTACAGCAGAAAGCGAAGGTGCAGAAAAATGCTTCTTACCAAACTGTGATCGATCACCAGGGGATTACGAGCCACCGTGCTTTCCCATCATGTACGCAGATGGCTCCGGATGTACCATGTTCACAAGATCAGCGGCTGCTTGCCAAACTGATAACGAAAACGTAACGCCCCGTGAGCAGCTCAATACTATCACTTCATTTATCGATGGATCGCAGATATATGGTTCCAGCATTGAGTTAGCAGAGAATCTTAGGGATTTTGACTCTAAAAAAGGCCATTTGAAAATAACGCGACCGAGGTACCTGCTACCATTTGTAAAATCGCCTTTCAACCCTCCCTTGAATCTTTGTCAGTTGTTCGGTGGCTGTTATGACGCAGGTGACTTTAGAGTCAATGAGCAGATCGCCCTCGTCGCAATGCACACCTTATGGGTTAGAGAGCACAACAGGATAGCCGACATTCTCTTTGAAATCAACAAACACTGGAACGCAGAGAGAATTTTCCATGAGGCAAGAAAAATTATTGGAGCCATTCTTCAACATATCACATATAGCCATTATTTACCCAAAATACTCGGAGCTGACTTTTTGCCTCCATATCATGGATACACTAACGTACATCCTGGAATCCTAAACGTGTTTGCCACTTCAGCATTTCGATTCGGTCATAGTATGGTGAGACCCAAATTTGCTATGCTCGATGCAAACTATGATCCGGTTGCTCCCGATGTGCCACTCATAAAAGCGTTTTTTAACAACAAATTGATTCAAAGAGAGGGTATCGAGCCAGTGCTTTTAGGACTTCTTGCCAATGAATCGCAAAGCACAAGCCGTGAAATAGCCGCGGGACTGACGAAACACCTTTTCCAACAACCGGAATCAGAACATGGGTTTGACTTAGCAGCGCTGAATATCCAAAGAGGCCGCGACCACGGTCTTCCAGGTTACGGGGCATGGAGACGCGAGTGCAATCTCTCACACGCAGATATCTTTCAGGAGACTACTTACGAGATTAAGAACGCTACGTCACGACAGATATTACATGATTTATATGAAGATGTAGAGTACGCTGACCTGTGGGTGGCAGGGTTGGCAGAGGATCCGCTACCTGAGGCCATGGTTGGTCCTACTTTGCACTGTATTCTGAAAGAGCAATTTCGACGTTTGCGTGATGGGGATCGGTTTTGGTATGAAAACGGTGTTTTCACAGTTGAGCAGCTTGATGAGATAGGAAAGACTTCACTGTCAAGAGTACTGTGTGATAACATTTATGGTATTGTTTCCGTTCAAAAAGATTCGTTCATTGCCGCCAAGGACGAATTAAAACGAGTTGAGTGTACTCAGATCCCTAGTATGGACCTAACGAAATGGAGAGAAAATCAGCCCTCAGTTCCTGAACCACTTGGAACATGGTCTGAATGGGTATACACTGTAAGGAAACCTACTGGAAGCTGGGCTGTTTCCATAGCTGACGACATTTGTCCAAGTTCCATGATGGATATTGAATGTCAGCTTGCAGATGGCTCGCCAACCCAATCATCAGGTCAAGTGATTCATTGTAAAGAGCGCGTTGGGGTATATTGCCGAAACAGAGAGCAAGCAGGAGACAAGAATGTTTGCATGGATTATCGCTTTCGCTTCTTGTGTTCCAGCATAGAGAAACCTGTTTCCCAGGGATTGAGATCTTTAACGACGACGCTTACTCTTTCAAAACCCGACACTCAGTGCAACACAGGGCGATATCCAAGCGATTTTCCTTTATCATTTGATACCGTTCAGCACATCACTATTGCACACGCTTACACCAATGAGCCAAATAGTGAGTACATGTTCGCAGGTAAGGATAAAGGGCAGCCGAAGAAACGCTTTTTAATCTCTTTCGACGTAAAGAAGATCACAAGGCGAGCAATCGTACATTCTGCTAAGTTGTACCTTTACCTCCTGAAATTTGGGGCTGGTTCTGAAGGTGATGAGACAGCCAGGTCTCCCTCGAATTCTCTTGAACTCTATCAGATCATAAGCACCGACTGGCATGCGGAGAACACAACCAGTGTAATACCGTGGCATCAGGACTATCTGGGAATTGGAAAAGACGTGACAAAGAAAAGGCTGACACAAAGCAAAAGCCTGCAACCTGGAGAAGGTCAGCGATGGATTGAACTCGATATTCAACATGCTGTGAGAAATTGGCAGATCAGAAATCAGCCAAATTATGGACTTTTGCTGAAGGTCAGAAAAGAATCGAATGCAGATGCATTGATGAAGTTTGCTTCCAGAGATCATCCACTATTAGATTTACACCCAAAGCTGGTTGTCTGCCTCACCATCCCTCCCTGGTAG

Transcript

rna-pdam_00000448

CTCGAATCATAATAAGTTTCGTGTAAACATTACACTTTGTCTGCTTGCGGTTTTACGCACTTCCCCTTTGTAAGCCAACAACCATTCACAAAGGACATAACATTGTATGCTCATCTCCCGTGGGGCTTGTGGTAGAATAGTCCACAGAATTCGTGGCAAACTTGTGATTACGTCAACTAATAACAGACCAAACACAGAATGAAgaggtttcttgaggttgtcATTGTATTAACATACTTGTTTAGTGCAGTAGTTACAGAAGATCCCCCAGGAAAATGTCAACGTCGGATTTATCAAATCACAGGGAATTCTGGTGTTATTAAGTCCCCTGGTTACCCGAAGAGCTACAATCCTCTTCAAACCTGCATATGGCGTATTATTGTAAAGAAGGGCTACAGGATCCATCTTTATTTTGATccacattttgatgtaacCAGGACAAAAGCATGCCGGGAAGAGTATGTAATGGTCAGCACTCGACGCCAGAGATTTACCTACTTCAACGTTGTTAGGACTAGTAAGGACTCCGTGGTGTTTTGTGGAGACCAGAAACCAAGCAACGTCACATCCCCTGGAAATGAAATGTGGGTACGCTTTAAGTCAAGATATGGTGGCCGAAGAGGTTTCAAAGCTTGGTTTGGAGCAGAAGACATAGACGAGTGCTCGGAATTTGCGAAAGGAGGCTGTCATCATGACTGTTTGAACACCCCAGGAAGCTTCAGATGTACCTGCAGATTGGGATACCATCTTTCACCAGATAGAAAAAGATGCGTTGagGACATTGTGATTTCCTTCTCAAAGAGGCGTTACAACGCATCAGTAGAAGCAACAGCCCCACCCGGTACATCCATTATTACAGTGCATGCCAACACTGGAAACTCCAAACGATCGCTTCGTTACTACATCATCTCTGTGAACGGCAAACGCGTCAGAGCCAAAACCCGCACACGGTTTGACATGGATCCAGAGATCGGTACTATTTCCATTCGCCGTAAACTCAAGATAAACGCCGTTTATCGCCTCAGAGTTAAGGCACGTTATAGAAACGTATCGTCCAGTTATGCCATGGTCATAGTCAGAGCAACTTCTCCCCTAAAGAAACCCCGCCTTAGCGCTGACGAGGGGTTGAAATTCCCCAGTCCAATATATTCAGTCATTATTCCTTACACCATGATCGTTGGACAGACTATATTGCACCTAAGAGCTGAGAAAAGCGAGGGCCTAACAAATTCTTCCATACGGTACAGAGTTCAGTCTGTCGATCCGTTCAATCGTAGCCCTTTCTTCAGTCTTAACCCCATCAAAGGTTCCCTCAAGATCGACAGGGATCTGACAGACCTCATATCTGGTGAGAAACCAGCCAACTTTGTGCTTCAGGTCATTGCCAGGGCTCAAGAGAATCCAAACGTATTTGCGTCTACGCAGGTGTCAATTGTTATAGTTCCAGAGTATGCTGGTAATAACTATGTCAAGTCTTCTATGGAGGCTGTTAATAATAGGTCTTTTATCGTGCTGAGCTCTGACCGTTTGCGATCTCACAAGAACGCCtccttttacaacaaaaagaaatcttcgAGAGGTCGAACAGAATTCTCTCTACATCGTCTGTTTCGGCGACCATCCCTTGAAGCTCAAAGAATTTCCAACGCAGACTTAAAgttcaacaaaataatcagGGAAATTAAGCGTGAAGTGGCAGATGACCTGATTGTAGATGAACGTGCACGATCAGGTGTGGTATCGGTGAGACTAGGCCCAAGCACCGTTGCCTCAGCCAACAGATTGTCCGACATCATCGAAGAACTAAACTGCTCCATGCCTACAGCCGATTGCTCCGACACTGAGTACCATTCACGCTACCGAACCTTTGATGGTACCTGCAACAACCTTGATAACCCTCTTTGGGGCGCAGCAACCACACCATACACTCGGATGTTAGACCCAATTTATTATGATGTAAATGGCTTATCAGATCCCGCAGGATTTCCAGATCAGCCGTATGCACCTGAGCTTCCTTCGCCACACCGTGTGAGTAAAGAATTCATCATTCACGTAACCGAGGCTAGTGGAAACAAAAACCGATATTCGCACATGATGATGCAATGGGGACAGTTTTTGGACCATGATCTCTCCTTTACAGCAGAAAGCGAAGGTGCAGAAAAATGCTTCTTACCAAAcTGTGATCGATCACCAGGGGATTACGAGCCACCGTGCTTTCCCATCATGTACGCAGATGGCTCCGGATGTACCATGTTCACAAGATCAGCGGCTGCTTGCCAAACTGATAACGAAAACGTAACGCCCCGTGAGCAGCTCAATACTATCACTTCATTTATCGATGGATCGCAGATATATGGTTCCAGCATTGAGTTAGCAGAGAATCTTAGGGATTTTGACTCTAAAAAAGGCCATTTGAAAATAACGCGACCGAGGTACCTGCTACCATTTGTAAAATCGCCTTTCAACCCTCCCTTGAATCTTTGTCAGTTGTTCGGTGGCTGTTATGACGCAGGTGACTTTAGAGTCAATGAGCAGATCGCCCTCGTCGCAATGCACACCTTATGGGTTAGAGAGCACAACAGGATAGCCGACATTCTCTTTGAAATCAACAAACACTGGAACGCAGAGAGAATTTTCCATGaggcaagaaaaattattggaGCCATTCTTCAACATATCACATATAGCCATTATTTACCCAAAATACTCGGAGCTGACTTTTTGCCTCCATATCATGGATACACTAACGTACATCCTGGAATCCTAAACGTGTTTGCCACTTCAGCATTTCGATTCGGTCATAGTATGGTGAGACCCAAATTTGCTATGCTCGATGCAAACTATGATCCGGTTGCTCCCGATGTGCCACTCATAAAAGCgttttttaacaacaaattgatTCAAAGAGAGGGTATCGAGCCAGTGCTTTTAGGACTTCTTGCCAATGAATCGCAAAGCACAAGCCGTGAAATAGCCGCGGGACTGACGAAACACCTTTTCCAACAACCGGAATCAGAACATGGGTTTGACTTAGCAGCGCTGAATATCCAAAGAGGCCGCGACCACGGTCTTCCAGGTTACGGGGCATGGAGACGCGAGTGCAATCTCTCACACGCAGATATCTTTCAGGAGACTACTTACGAGATTAAGAACGCTACGTCACGACAGATATTACATGATTTATATGAAGATGTAGAGTACGCTGACCTGTGGGTGGCAGGGTTGGCAGAGGATCCGCTACCTGAGGCCATGGTTGGTCCTACTTTGCACTGTATTCTGAAAGAGCAATTTCGACGTTTGCGTGATGGGGATCGGTTTTGGTATGAAAACGGTGTTTTCACAGTTGAGCAGCTTGATGAGATAGGAAAGACTTCACTGTCAAGAGTACTGTGTGATAACATTTATGGTATTGTTTCCGTTCAAAAAGATTCGTTCATTGCCGCCAAGGACGAATTAAAACGAGTTGAGTGTACTCAGATCCCTAGTATGGACCTAACGAAATGGAGAGAAAATCAGCCCTCAGTTCCTGAACCACTTGGAACATGGTCTGAATGGGTATACACTGTAAGGAAACCTACTGGAAGCTGGGCTGTTTCCATAGCTGACGACATTTGTCCAAGTTCCATGATGGATATTGAATGTCAGCTTGCAGATGGCTCGCCAACCCAATCATCAGGTCAAGTGATTCATTGTAAAGAGCGCGTTGGGGTATATTGCCGAAACAGAGAGCAAGCAGGAGACAAGAATGTTTGCATGGATTATCGCTTTCGCTTCTTGTGTTCCAGCATAGAGAAACCTGtttcccaGGGATTGAGATCTTTAACGACGACGCTTACTCTTTCAAAACCCGACACTCAGTGCAACACAGGGCGATATCCAAGCGATTTTCCTTTATCATTTGATACCGTTCAGCACATCACTATTGCACACGCTTACACCAATGAGCCAAATAGTGAGTACATGTTCGCAGGTAAGGATAAAGGGCAGCCGAAGAAACGCTTTTTAATCTCTTTCGACGTAAAGAAGATCACAAGGCGAGCAATCGTACATTCTGCTAAGTTGTACCTTTACCTCCTGAAATTTGGGGCTGGTTCTGAAGGTGATGAGACAGCCAGGTCTCCCTCGAATTCTCTTGAACTCTATCAGATCATAAGCACCGACTGGCATGCGGAGAACACAACCAGTGTAATACCGTGGCATCAGGACTATCTGGGAATTGGAAAAGACGTGACAAAGAAAAGGCTGACACAAAGCAAAAGCCTGCAACCTGGAGAAGGTCAGCGATGGATTGAACTCGATATTCAACATGCTGTGAGAAATTGGCAGATCAGAAATCAGCCAAATTATGGACTTTTGCTGAAGGTCAGAAAAGAATCGAATGCAGATGCATTGATGAAGTTTGCTTCCAGAGATCATCCACTATTAGATTTACACCCAAAGCTGGTTGTCTGCCTCACCATCCCTCCCTGGTAGATGAGTAATAGACTTCTTGATGGTTCCGATGGACATGACTAGTAATGAGTTAATCACTTAAGCTTAGGGAAACAACCTGACCAAGGAACTTTACGATGCATACAATTTTACGATATAACGCGGATCGCAAAGCTAGTAGTGCGATATTTAAATTGGAATTCAATAGTTAGGTTGTTAATTTCCTTGCATTGCTTAAAtgttgtaataaaataaagaaaaagctttttccaacaaattttattccttCGGCGCCTTAAAAACCATTCAAATTGACTGTAGGAACATTTAAACGTGTAATGTATGTGAAAGAAGCTAAAAGTTTAATCAGATCTTTTTCAGTGAAACAGCTCGCGAGGGCAAGCTCCATCAATCAAGTAGTGTTTGGTCACTTcatattttctatattttattAAGAAATGTCTGTGTTCTATTAACGCGTGCTTTTGAGTGGCTGCTGCCAAGACTTTCAAAAATCTTCGACCAGCTTGCTTTAcgtatttcattgttttttcctttagtacGGGTTACGCAGTTTTATCAGTGACAAAAGTCACCGTGCAAGCTGTAAATGGtagcattttttgtttgttttcggAGAACTTTCCTAGTTTAAGTCCTTGCTGAAGGATGCTGcttagtttatttttgaaataaaaatttacgtGATGCTTCTTCCACCGAAAATTGTAAATGCAGATGTCTCGTGTTTCTCACCGTCATTTCCTGTTAAGTCTGGACTTTGTTTGGCGCGTTACCAGCGTTGTATGATAAGTCAGCCCTAATTCCACCATAAATAACTCGCCTCAGTGGCCAATCATATTGCAAGAGTTCTCTATGTTATTAAACCTCATTTTAAATTGTGGAAGTATGGAACGTGAATCTTAAAGAAACCTTTCGCGAATAAGGGCATTTTCCTTTGTCTAATAGCCCGAAGAGAGCTcgaattaaaagaatttacaaaataCCTTAATTTATCTCGCGAAATCTTTGTCAGTGTTCTAGTATAAGTTCAACTGTCGCTCTCACGAAATCAATATGAGTTGCATAATAACTTCGACAATTGGGTAGCAACGGATGTCTCCTTTGACCCGACCTGTCCATCTATTGGCTTATCTATTCGATAAGCAACAGTAAAGTTGAGATGGAGCCTTAATGACTTTGTAGAAGCAATTTCAAGAATAATGAATTATCACTTGTCCCTTAATATTAACATGCTTTCTTCTTGTGCTTAGACTATCACTACTACGCGAATCATTCCATAAAGCTGCGCTATACAATAGTTTTGGACGGgatctgttcatttttttgcaaagagATTAACGAGTGTGTCCCAAGGTTGAGAACAATTTCATAGTCCGTAGgatttcattacaaaatacaGTAACTCGACTTCGTTAGCGCAGAACAAACATGTGAAACAGTCATTAAGAGACTGCAAACCTCATTTATCGAAACAGCgttgataataaaatttatcaaaagatC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00688 all species →	TGFb_propeptide	TGF-beta propeptide	Family	Interproscan
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF13330 all species →	Mucin2_WxxW	Mucin-2 protein WxxW repeating region	Family	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR050702 all species →	Family	Peroxidase Activity and Reactive Species Generation	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR001111 all species →	Domain	TGF-beta, propeptide	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR025155 all species →	Domain	WxxW domain	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11475 all species →	OXIDASE/PEROXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19511	PXDN, VPO1; peroxidase	EC:1.11.1.7	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.