Gene detail

Detailed information of RMX53911.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1379:29377...41565
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00020093

ATGGAAGTGGATGGAACTAACACCCAAGACGAGTTAAGTGGAGTTTCTCTGCAACACGAAGCGGCTTGTACAGTAGACGCAAAGGCGCTTGAGGAAAATGGCGGAGATCTAGCCTTCACTCCTACGTTTTCGCCAGATGGTCCTGTTACAACTCTTGCTGAGCTATCGGGAGTAAAGAGGAAGCACACTGATCAAACAGATGAACAAGTAAATAAACATCTCCATCTTGACCCTGAGAGTTCAGATGGGTTTGCTGACTTGGCAACTCTCGTCAGTATGTCCTCTTCTGTTTCACTCGCTGTTTCTCAGGAGGTAGCCTCTCAGACATTCACCAATGCCACCATTGACAACACTGGTCAGCTTGCTCCTCTCTCAGCTCAAGAAGCAGCAAATGCAACATTAACATTGTCCGCAGCTGTTGCAGCACTTGCCGCAGGTCAGCTTACTCAGGAGTCATCAATCGTTCCAGCCTCCCAGCCAGTTGTTGTCAGTGACAACAATAATTCAGTCAACCAAGCTTGGTTTACCACTAAGGAGGACAAAGATAATCTTCATGGCAAAGGTGTGAAGTGGAGGCAAGGAATGTGGTCTAAAGAGGAGAATGAACAGCTTAAAGAGAACATTCTTGAGTACTGCAAGGTGAACAACATCCCAGATCCAAATATAATCATATTTGAAATGACTAAAGATGATCGAAAGGATTTCTACAGAACAATTGCAAAGGGAATAAGACGTCCTTTATTTGCCATATACCGTCGTGTTCTTCGCATGTACGACAGGCGAAATTATATAGGAAAATACTCTTCAGAGGAGGTGGAGCAACTAAAATCTTTGAAAGAGAAACATGGTAACGACTGGGCTACAATTGGGGCTGCCATGGGCCGGAGTGCGTCATCTGTCAAGGACAGATTCAGGCTTATGAGAGAACACTGTCATTCTGGCAAGTGGACTGTAGAGGAGGAGCAGAGACTTTCCAATGCAGTACATGAACTTAGCAGTGCAGCCTCTGGGGATTTCATTACAGCTGGGATATCTTGGGCAGCTGTTGCTGAGAGAGTGGGCACAAGATCAGAAAAGCAATGCCGCTCCAAATGGTTAAATTATTTAAACTGGAAAGAAAAAGGAGGACAAGAATGGACAAAACAGGATGAGATTCAACTCATTACCAGAATCCACGAAATGAATCTTCAGGATGAGAATGATTTAGATTGGCAGTGGCTTAGAAGCAAGTGGTGGGCGTTGAAAAAACATGTTCCTGAAAGTGATATGGGGACATTTGAAGTCACTAGTGATGGAACAGTATCAAGAGAAGACGACACATCTCCTCTCACTACCAGTCACAATAGATTCGAAGTGGTACAGGTCAATGCACTTACACCACAAGATATGTTTCACACTGCGTCCGCTGTTCAAGGGACACCGTCATACATCATACAAGCGCCGGCAGGACAGACCTACATTATTCAGCAGCCGGCTGGAAGTTTAGTGAGGCAGGCGCACACGGGAGAACTCACCTCAGGATCTGACGGAATTGATACTAGTCAACATGACCAGGAGGTAGTGACTGTTCTCCAGGCCCATCACGCCGTTCAAACCCTCCCAGAGGTTGGACCCGAGTTTACTCAAGCCATTGTACAAACAGACATTTCCGGTCCCATTACAGCATCGGAACTGACCAACGCAGGTCTAAGTCATACGAAGTTTGTAAAACCTGCCGCCGATTTGCAAACATCTGTGGTGTCACAGGGCGATGGTAGCCATGCCACAGTCGACCAGACCAGCCTAGAGGCTGTCCAGACTGTAGACACCCGTCAGTTGGGAGGCCACCAGAGTCTGGTGCAAGATGAGCTCCAGGTGGAAGCATCCAATGCGAAAGAAGGTGGGAGCAAACAGACTGCTTTGCCGCATCACCCAACATCGGGTAGAGACGAGGATAGCAATGTAGCTAGCACAAATCAGGCTTTCACCAGTCCTCCATTTCAGGGTCCGGCGGCAATCGCCCAGACGTTAGACGGAACACACCTCCCAGACAGGCCAGTAGTACACATGCATCAAGTTGGCCCGGAAAACAGGGACGTCATCGTCAGCCCAGATCCCTTGGGGGACGTACACGTCACAGTTATGTCAAACATAGAGACAGGTCTTCCTGCTACTTTATCGCCATCACCCGCTATGACACTTCCACAGCATACACTAAGCCGCACTAGCAATGCCAATGAGTTATCTGTGAACGTAATGGTTCCTCAGGTCACTCTACCAGATGAGATACTTCAGTCGCAGTCAGACGAACCTTCTGTTTTATCCCCAGCTGAATCGACTAATGTGATGATGGTTACCGAAAACCCCATGTCTGTCACTTCGACTCTTCCCTCTCAAATCCTTCAGTCACAAACTGATGAAAACACGAACCTGTCCGACCCCACTCCCACGTCTAACAGTACCGTTCCTACTGGAATAAGTGTTGATGGCCCTCTCGGCAATGTGGTGACTGTCCAGGGTGCCCTTGGGCATCCGGGAGATATTATGGATGCCAGTGATGTATTGCTGCATATTTCATTGCCTATTTCCGATCCGTCTGTTACTTCAGAGAAGCAAGATTGTTCTACAGAAACCTAA

Transcript

rna-pdam_00020093

atggaAGTGGATGGAACTAACACCCAAGACGAGTTAAGTGGAGTTTCTCTGCAACACGAAGCGGCTTGTACAGTAGACGCAAAGGCGCTTGAGGAAAATGGCGGAGATCTAGCCTTCACTCCTACGTTTTCGCCAGATGGTCCTGTTACAACTCTTGCTGAGCTATCGGGAGTAAAGAGGAAGCACACTGATCAAACAGATgaacaagtaaataaacatCTCCATCTTGACCCTGAGAGTTCAGATGGGTTTGCTGACTTGGCAACTCTCGTCAGTATGTCCTCTTCTGTTTCACTCGCTGTTTCTCAGGAGGTAGCCTCTCAGACATTCACCAATGCCACCATTGACAACACTGGTCAGCTTGCTCCTCTCTCAGCTCAAGAAGCAGCAAATGCAACATTAACATTGTCCGCAGCTGTTGCAGCACTTGCCGCAGGTCAGCTTACTCAGGAGTCATCAATCGTTCCAGCCTCCCAGCCAGTTGTTGTCAGTGACAACAATAATTCAGTCAACCAAGCTTGGTTTACCACTAAGGAGGACAAAGATAATCTTCATGGCAAAggTGTGAAGTGGAGGCAAGGAATGTGGTCTAAAGAGGAGAATGAACAGCTTAAAGAGAACATTCTTGAGTACTGCAAGGTGAACAACATCCCAGATCCAAATATAATCATATTTGAAATGACTAAAGATGATCGAAAGGATTTCTACAGAACaattgcaaaggGAATAAGACGTCCTTTATTTGCCATATACCGTCGTGTTCTTCGCATGTACGACAGGCGAAATTATATAGGAAAATACTCTTCAGAGGAGGTGGAGCAACTAAAAtctttgaaagagaaacatgGTAACGACTGGGCTACAATTGGGGCTGCCATGGGCCGGAGTGCGTCATCTGTCAAGGACAGATTCAGGCTTATGAGAGAACACTGTCATTCTGGCAAGTGGACTGTAGAGGAGGAGCAGAGACTTTCCAATGCAGTACATGAACTTAGCAGTGCAGCCTCTGGGGATTTCATTACAGCTGGGATATCTTGGGCAGCTGTTGCTGAGAGAGTGGGCACAAGATCAGAAAAGCAATGCCGCTCCAAatggttaaattatttaaactggaaagaaaaaggaggaCAAGAATGGACAAAACAGGATGAGATTCAACTCATTACCAgaaTCCACGAAATGAATCTTCAGGATGAGAATGATTTAGATTGGCAGTGGCTTAGAAGCAAGTGGTGGGCGTTGAAAAAACATGTTCCTGAAAGTGATATGGGGACATTTGAAGTCACTAGTGATGGAACAGTATCAAGAGAAGACGACACATCTCCTCTCACTACCAGTCACAATAGATTCGAAGTGGTACAGGTCAATGCACTTACACCACAAGATATGTTTCACACTGCGTCCGCTGTTCAAGGGACACCGTCATACATCATACAAGCGCCGGCAGGACAGACCTACATTATTCAGCAGCCGGCTGGAAGTTTAGTGAGGCAGGCGCACACGGGAGAACTCACCTCAGGATCTGACGGAATTGATACTAGTCAACATGACCAGgAGGTAGTGACTGTTCTCCAGGCCCATCACGCCGTTCAAACCCTCCCAGAGGTTGGACCCGAGTTTACTCAAGCCATTGTACAAACAGACATTTCCGGTCCCATTACAGCATCGGAACTGACCAACGCAGGTCTAAGTCATACGAAGTTTGTAAAACCTGCCGCCGATTTGCAAACATCTGTGGTGTCACAGGGCGATGGTAGCCATGCCACAGTCGACCAGACCAGCCTAGAGGCTGTCCAGACTGTAGACACCCGTCAGTTGGGAGGCCACCAGAGTCTGGTGCAAGATGAGCTCCAGGTGGAAGCATCCAATGCGAAAGAAGGTGGGAGCAAACAGACTGCTTTGCCGCATCACCCAACATCGGGTAGAGACGAGGATAGCAATGTAGCTAGCACAAATCAGGCTTTCACCAGTCCTCCATTTCAGGGTCCGGCGGCAATCGCCCAGACGTTAGACGGAACACACCTCCCAGACAGGCCAGTAGTACACATGCATCAAGTTGGCCCGGAAAACAGGGACGTCATCGTCAGCCCAGATCCCTTGGGGGACGTACACGTCACAGTTATGTCAAACATAGAGACAGGTCTTCCTGCTACTTTATCGCCATCACCCGCTATGACACTTCCACAGCATACACTAAGCCGCACTAGCAATGCCAATGAGTTATCTGTGAACGTAATGGTTCCTCAGGTCACTCTACCAGATGAGATACTTCAGTCGCAGTCAGACGAACCTTCTGTTTTATCCCCAGCTGAATCGACTAATGTGATGATGGTTACCGAAAACCCCATGTCTGTCACTTCGACTCTTCCCTCTCAAATCCTTCAGTCACAAACTGATGAAAACACGAACCTGTCCGACCCCACTCCCACGTCTAACAGTACCGTTCCTACTGGAATAAGTGTTGATGGCCCTCTCGGCAATGTGGTGACTGTCCAGGGTGCCCTTGGGCATCCGGGAGATATTATGGATGCCAGTGATGTATTGCTGCATATTTCATTGCCTATTTCCGATCCGTCTGTTACTTCAGAGAAGCAAGATTGTTCTACAGAAACCTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF20588 all species →	DMTF1_N	Cyclin-D-binding Myb-like transcription factor 1 N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR051651 all species →	Family	DMTF1 DNA-binding transcriptional regulators	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR046775 all species →	Domain	Cyclin-D-binding Myb-like transcription factor 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46380 all species →	CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21625	DMTF1, DMP1; cyclin-D-binding Myb-like transcription factor 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.