Gene detail

Detailed information of RMX53966.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1354:53170...66609
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00020902

ATGATTGTCCGTATTTGGCGATTGATCGTTCCATGCGGCTCTGATTGGCTAATGTTAATTATACGCGGGAAAACTGGGGAACTTGAATCCTCTTTCGGCGCCAAAATTGAATCACTTACCTCACTTCGCCTTCAGATCAAGTTCGTTTGGAATTGTGCAGTAGATATTTCGCTTTTTGGTTACCTTTTTCAACAGAATTTTCTTTGCACTATGGCCGACAACTCAAAAAAAGAGAAGAAAATCAAGAAGCCTTCCTCTTACGTCCTCAAACGAAATGGAAAAGAGGAGGAAATCAATCTGAACAAAGTCACTGCCAGGATTAAAAAGCTTGGTTATGAGCTCTCTGATTTTGTCGACACGTTTGAGATTGTCAAGAAGGTAATTGATGGCATCTACCCTGGTGTAGCCACAACTCAGCTGGATATACTTGCAGCTGAGATTGCTGCCTCCATGACAACCATACATCCTGACTATGCTGTCCTTGCAGCCAGGATTGAGGTTTCTAATCTTCACAAAGAAACGAAAAAGATTTTCAGTGAGGTAATGACAGATCTCTATAACTATGTCAACCCAAAGAATGGTAAACATTCTCCGCTGATCTCCAAGGAAACTTATGACCTCATAATGGAGAATGCCGATAGAATTGACTCAGAGATCATTTATGATCGTGACTACCAATACAACTACTTTGGTGTTAAGACAATGATGAGGTCTTACCTGCTTAAAATCAATGGCAAAGTTGCTGAACGACCACAGCACATGTTGATGAGAGTTGCACTTGGAATTCACCAGACTGACATTGAAGCAGCAATTGAAACATACAAACTGTTATCAGAGAAGTGGTTTACGCATGCATCACCGACCCTGTTCAACGCTGGTACATGTAAACCTCAACTGTCCAGTTGTTTTCTTGTGACCATGACCGATGACAGCATTGATGGTATTTATGACACACTGACACTTTGTGCTAAGATATCCAAGGCTGCAGGTGGAATTGGAATCAACGTGCATAACATCCGGGCTTCTGGAAGCTACATTGCTGGGACCAATGGAGTCTCAAATGGTCTTGTTCCAATGTTGCGTGTGTACAATGCCACAGCCAGGTATGTAGATCAAGGAGGCAACAAGAGGCCTGGTGCCTTTGCCATATATCTGGAGCCTTGGCACAGCGATGTTTATGATTTCTTGGAACTGAGAAAGAACACTGGCAAAGAGGAGCAGCGTGCTCGTGATCTTTTTTTTGCATTGTGGATCCCTGACTTGTTCATGAGGCGTGTTGAGAAGGATGAGATGTGGTCACTAATGTGTCCTAATGAGTGTCCTGGATTACAGGACTGTTGGGGTGAGAAATTTGAAGAGCTCTATGTCAGGTATGAGGAGCAAGGAAAGTTTCGGAGACAAGTCAAAGCACAGAATCTTTGGCAGGCAATCTGTCAATCACAGATTGAGACAGGCACACCTTACATGCTGTACAAAGATGCATGCAACAGGAAAAGTAATCAGCAGAATGTTGGGACAATCAAATGCAGCAATCTGTGCACTGAAATTGTGGAGTACAGCTGTCCAGATGAGGTTGCTGTCTGTAACTTAGCATCTCTGGCACTTAACAAGTTTGTTGTAACCAATGGAGGGGGCCAACCCACATACAATTTCCAAAAACTTTTTGAGGTTACCCAGGTGGTAACACGCAACCTGAACAAGATTATCGACATCAACTATTACCCAGTGAAGGAGGCTGAAAAATCCAACAAGAGACACAGGCCCATTGGTATCGGAGTTCAGGGATTGGCTGATGCCTTCATTCTAATGAGATATCCATTTGAAAGTGAAGAGGCCAGAGATATGAACAGGAAAATATTTGAGACAATCTACTATGGGGCTCTGACAGCTTCCTGCAAACTGGCTAAAGAAAAAGGGACGTATGAGACTTACCAAGGGTCACCTGCAAGCCAAGGGAAACTTCAGTATGATCTTTGGAATGTCACTCCATCTGATTTTTGGGATTGGGCAGCTCTCAAGGCAGAAATAAAAAAGTATGGATTAAGGAATAGTTTGTTGATTGCACCAATGCCAACAGCTTCCACTGCACAGATCCTTGGCAACAATGAGTCTTTTGAGCCTTACACGAGTAACATCTACACTCGACGCGTTCTCTCAGGAGAGTTTCAGATTGTAAACCATCATCTGTTAAAAGACTTGACTGAAAGAGGACTCTGGAATGAGACTTTGAAGCACAAAATAATAGCTGCAAATGGATCCATTCAGCACATTGATGAGATCCCTGATGACTTAAAGCCTTTGTACAAGACAGTTTGGGAAATTTCTCAGAGAACTCTTGTAGACATGGCAGCGGAAAGAGGAGCTTTCATTGACCAGAGCCAGTCCTTCAATGTGTTCTTTGCTGAACCCAGTTATGGCAAACTAACAAGCATGCATTTTTATGGCTGGAAAAAGGGCCTGAAGACTGGAATGTATTACTTGCGTTCACGCCCTGCTGCTAATGCAATCCAGTTTACAGTTGATCAAGAAACCCTCAAGAAGACAGCTAAAACCAAAAAGGAGAACACAGAAGTCTTGGCATGCTCTCGGGACAATCCTGATTGCTTAAGCTGCAGTGGATAA

Transcript

rna-pdam_00020902

gGAATTAAAGTAGTTCGCATGATTGTCCGTATTTGGCGATTGATCGTTCCATGCggctctgattggctaatgTTAATTATACGCGGGAAAACTGGGGAACTTGAATCCTCTTTCGGCGCCAAAATTGAATCACTTACCTCACTTCGCCTTCAGATCAAGTTCGTTTGGAATTGTGCAGTAGATATTTCGCTTTTTGGTTACCTTTTTcaacagaattttctttgcacTATGGCCGACAActcaaaaaaagagaagaaaatcaagaagcCTTCCTCTTACGTCCTCAAACGAAatGGAAAAGAGGAGGAAATCAATCTGAACAAAGTCACTGCCAGGATTAAAAAGCTTGGTTATGAGCTCTCTGATTTTGTCGACACGTTTGAGATTGTCAAGAAGGTAATTGATGGCATCTACCCTGGTGTAGCCACAACTCAGCTGGATATACTTGCAGCTGAGATTGCTGCCTCCATGACAACCATACATCCTGACTATGCTGTCCTTGCAGCCAGGATTGAGGTTTCTAATCTTcacaaagaaacgaaaaagatTTTCAGTGAGGTAATGACAGATCTCTATAACTATGTCAACCCAAAGAATGGTAAACATTCTCCGCTGATCTCCAAGGAAACTTATGACCTCATAATGGAGAATGCCGATaGAATTGACTCAGAGATCATTTATGATCGTGACTACCAATACAACTACTTTGGTGTTAAGACAATGATGAGGTCTTACCTGCTTAAAATCAATGGCAAAGTTGCTGAACGACCACAGCACATGTTGATGAGAGTTGCACTTGGAATTCACCAGACTGACATTGAAGCAGCAATTGAAACATACAAACTGTTATCAGAGAAGTGGTTTACGCATGCATCACCGACCCTGTTCAACGCTGGTACATGTAAACCTCAACTGTCcagttgttttcttgtgaCCATGACCGATGACAGCATTGATGGTATTTATGACACACTGACACTTTGTGCTAAGATATCCAAGGCTGCAGGTGGAATTGGAATCAACGTGCATAACATCCGGGCTTCTGGAAGCTACATTGCTGGGACCAATGGAGTCTCAAATGGTCTTGTTCCAATGTTGCGTGTGTACAATGCCACAGCCAGGTATGTAGATCAAGGAGGCAACAAGAGGCCTGGTGCCTTTGCCATATATCTGGAGCCTTGGCACAGCGATGTTTATGATTTCTTGGAACTGAGAAAGAACACTGGCAAAGAGGagcagCGTGCTCgtgatcttttttttgcattgtgGATCCCTGACTTGTTCATGAGGCGTGTTGAGAAGGATGAGATGTGGTCACTAATGTGTCCTAATGAGTGTCCTGGATTACAGGACTGTTGGGGTGAGAAATTTGAAGAGCTCTATGTCAGGTATGAGGAGCAAGGAAAGTTTCGGAGACAAGTCAAAGCACAGAATCTTTGGCAGGCAATCTGTCAATCACAGATTGAGACAGGCACACCTTACATGCTGTACAAAGATGCATGCAACAGGAAAAGTAATCAGCAGAATGTTGGGACAATCAAATGCAGCAATCTGTGCACTGAAATTGTGGAGTACAGCTGTCCAGATGAGGTTGCTGTCTGTAACTTAGCATCTCTGGCACTTAACAAGTTTGTTGTAACCAATGGAGGGGGCCAACCCACATAcaatttccaaaaactttTTGAGGTTACCCAGGTGGTAACACGCAACCTGAACAAGATTATCGACATCAACTATTACCCAGTGAAGGAGGCTGAAAAATCCAACAAGAGACACAGGCCCATTGGTATCGGAGTTCAGGGATTGGCTGATGCCTTCATTCTAATGAGATATCCATTTGAAAGTGAAGAGGCCAGAGATatgaacaggaaaatatttgagacAATCTACTATGGGGCTCTGACAGCTTCCTGCAAACTGGCTAAAGAAAAAGGGACGTATGAGACTTACCAAGGGTCACCTGCAAGCCAAGGGaaacttCAGTATGATCTTTGGAATGTCACTCCATCTGATTTTTGGGATTGGGCAGCTCTCAaggcagaaataaaaaagtATGGATTAAGGAATAGTTTGTTGATTGCACCAATGCCAACAGCTTCCACTGCACAGATCCTTGGCAACAATGAGTCTTTTGAGCCTTACACGAGTAACATCTACACTCGACGCGTTCTCTCAGGAGAGTTTCAGATTGTAAACCATCATCTGTTAAAAGACTTGACTGAAAGAGGACTCTGGAATGAGACTTTGAAGCACAAAATAATAGCTGCAAATGGATCCATTCAGCACATTGATGAGATCCCTGATGACTTAAAGCCTTTGTACAAGACAGTTTGGGAAATTTCTCAGAGAACTCTTGTAGACATGGCAGCGGAAAGAGGAGCTTTCATTGACCAGAGCCAGTCCTTCAATGTGTTCTTTGCTGAACCCAGTTATGGCAAACTAACAAGCATGCATTTTTATGGCTGGAAAaagGGCCTGAAGACTGGAATGTATTACTTGCGTTCACGCCCTGCTGCTAATGCAATCCAGTTTACAGTTGATCAAGAAACCCTCAAGAAGACAGCTAAAACCAAAAAGGAGAACACAGAAGTCTTGGCATGCTCTCGGGACAATCCTGATTGCTTAAGCTGCAGtggataaatgaaaaactgcTTTGTGCTTCTCACTAACTTAACAAACCACCCCACGATATCCTAGCTTGCATGTACTATggcaaccttttttttttaaaaataatgcacTTTCTGTTAAATTGCTACAACTGTTGTAAGCAACAATTCTATTTCCTAAAAACTCTCGTCATAAGTATATCATAGTTCTACTTTCACCTAGTTGCAATAACATCAAAgagaaagtaattaaaaaaagggaaaaaatccAAATGGGAATTGatcagaataaaaaatttccttacttTAAATTACAAGTTAAGTTGATTTTAAGTTAACTGAGACAGATCTCTTagatttatttgttaaatgtaGTAATTTCCAGACTACACCCTATATAAGATGAATGATATGAATTTGCAAAATCAATTCCTGTGTGGGTTTTCCTTGTTTGCGTTTAGCTTTTTTTCCCATGAAAATGTCTCTGCATTTAGGGGTAGATCGGCAAACCTAAGATCATGTAACTTTGCAAAAGAatatcttaatttatttttctattactGTACAATCAGCAGACAACTGATTTAATGAGCAAAGTGAGGTAAAGtcgcagaaaaaaatgactatttctgtgttttgtaATGTATATTAGGAATGGACTGTACTAAAGACACATGCTGACCTTGCAGGCCTACAATGtaatttaagtaatttttgtgATTGCACAATAATACTCAAACACAGAGTGTACATATCATTGTAACTTTTTTACATGATCATTGTCTTCCCCAAATCTCACCAAAAACCCTGATAGTAAATATTATACCCAGGGaatgtcaaaaataaacaattaaaagctTTGCATTCTGTTcttgaaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00317 all species →	Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	Domain	Interproscan
PF03477 all species →	ATP-cone	ATP cone domain	Domain	Interproscan
PF02867 all species →	Ribonuc_red_lgC	Ribonucleotide reductase, barrel domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000788 all species →	Domain	Ribonucleotide reductase large subunit, C-terminal	Interproscan
IPR013509 all species →	Domain	Ribonucleotide reductase large subunit, N-terminal	Interproscan
IPR039718 all species →	Family	Ribonucleoside-diphosphate reductase large subunit	Interproscan
IPR005144 all species →	Domain	ATP-cone domain	Interproscan
IPR008926 all species →	Homologous_superfamily	Ribonucleotide reductase R1 subunit, N-terminal	Interproscan
IPR013346 all species →	Domain	Ribonucleotide reductase, class I, alpha subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11573 all species →	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004748 all species →	Molecular Function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0009263 all species →	Biological Process	deoxyribonucleotide biosynthetic process	Interproscan
GO:0005971 all species →	Cellular Component	ribonucleoside-diphosphate reductase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10807	RRM1; ribonucleoside-diphosphate reductase subunit M1	EC:1.17.4.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.