Gene detail

Detailed information of RMX54136.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1314:71082...76645
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00017385

CGCCATACTGTTTTCGCCCGCGCAATGTTTTATCTTGAACAGCAGCTTTTCAAATGGGTACTTCCCCTGTTGTATCTGAGCTCACTGAAAAATACTGCGAGTCTTTTCAAATGACGTCATTCTTCCCACACTTCTTTGAGGAAAACACTTTCATCCGGCTCAGCCATATTGCTTTTTGCTGACAGACAGTAACCCCTAACTCCAATCCCGGCCATCCTAGGCCATCTTTGTATAGTTTCAGTTATATCTCCTCTGTACAGCAATGTCTTCGGGAACTCCATACCTTGGCACTAAAATAAGCTTAATTTCCAAGTCAGAAATTAGATATGAGGGAATTTTGTATTCCATTGACACCAAGGAATCTGTTGTGACGTTAGCACAGGTGCGTTCTTTTGGAACGGAAGACCGAGAGGCGCCTAAAAGGGTTCCTCCAAGGGACGAGGTTTACGAGTACATTGTTTTTCGAGGACAGGACATCAAAGATCTAACTGTAATAAGTGCTGAGTCGCATTTACCTCAGGACCCAGCCATTGTCCAGTCTGGTAGTTCAAGAGTTCCAACTCCTGGCTATTCTCATTTCCCTGCTCCTGTATCATTCCCACCTCATCCAACCACATATCCTCCATTTGGTTCGCCATATGGCGGTTACACGCCACAACACAGACCAATGCCAGGCCCCATTCCACCACATCCAGCAATGATGCCACCTGGTCCTATGATGCCTCCAAGGATATCCACACCACCAACAGTTCAACATGTACCTTTGTCTCGCAGTCATACACCATCTCCAGAAACTGTAACACCTGTGGTATCCACTTCTAAAACAGAGGATAAAAGGGAGGATGCCGCTCATGATAAAAGCACAGCTCAGCAAGGAACTCAAACAGTTCAGGCTAAGAAGAAACCATCTTCTAGACCATCGTCAAGAAGAGGCTCAGTAGACAAAACGGCTGCATCtcaagagaagaagaagaaacaagagGTAGTAGATAAGGAAACTTTTAATAAAGACCCCACGGAGGAAACCCAGTCCACTGAACCtcagaaacagaaacaagTGGGTAATCGTCGTCCACAGGGAAGAAGAGGATCTGGTCCAAGAGTCAACAAACCACGAACAGTTGGTGGTCCTGTTAAATTTGAGGGCGAGTTTGATTTTGAGAGTTCAAATGCTAAGTtcaataaagaagaaattgagGAGGAACTACAGCAGAAGCTCTATGAAAACCTCAGGTTGAAAGACGAGGATGAAAGTGAAGCAATCAGTGCACCTGAAAATTATGCTAGTGATGCTCAACCTTCAAGCCCTCTCAATTATTATGATAGTTCCAAATCCTTCTTTGACAGTATTTCCTGTGAGGCAAATGACAGAAACAGAAATAGACGggctCACCCTTCATGGCAGCAAGAACGTAAAGTAAACATGGAGACCTTTGGAGTAACTGGTGGCATGCGACGTGGAGGTCGAGGGAGAGGAAGAGGGAGAGGTCGAGGAGGTTACAGAGGTGGCAGAGGTGGAAATAGGTATCAAGGACATGATGGCAGTAGTCAAGGAGGACGTGGAGGCTGGCGTGGTGGGCGTGGTGGTTCCAGAGGTGACCGCTCAAGGTCCTATGTAGATCAATCCATTAATGGTAATGACAAATTACCAAGAAATCTACCCAATGGACCAGCTATGGGAGGAGATGGTGAAGCAGCTGCCAAAGCATGAAGCCACtgataattaatttgaaaaaattttctggttttctttctcttatttACTTgggtttcttttttgctttcttttttttttttggagtcATGGAATGACTAATTGTGGTCTGACCACAGACTTTATTGTTTCTAGTGTTGTGGTTAATCTTAGCTCTTTGCAGTCAGGGATCAGTTTTGTAGAAATGTCCAGTTGCTGAATGATATTCTTTGACAAGAAAATACCATGAATGCATAGCTGTATATGGctctttcataattttgtacATGCTGTATTTCTAAGACATAATATTATTGTATCATTATTGGCTTCGTGTATACAATAAATGTCAGAAGATATGTCATGCATTAAAGTTATGTTTGCATTTCACAGCTGTGTCACAAAGTGACCCTCtttaacaaacagaaattgttattttcaccTTGCTATTAATGCTTATactaataaaaatgtttgggAATGATATGTTTTGGGTACCCATGGACTAAATATTTATCACAGATGTAATGGTTTACAAGAGGTATAATTTTTCTACACACATACATTTAAGCAATTCATGGTTTCTTTGCggtatttccttttgaatttc

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12701 all species →	LSM14	Scd6-like Sm domain	Domain	Interproscan
PF09532 all species →	FDF	FDF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025761 all species →	Domain	FFD box	Interproscan
IPR025609 all species →	Domain	Lsm14-like, N-terminal	Interproscan
IPR047575 all species →	Domain	Sm domain	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR019050 all species →	Domain	FDF domain	Interproscan
IPR025768 all species →	Domain	TFG box	Interproscan
IPR025762 all species →	Domain	DFDF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13586 all species →	SCD6 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan
GO:0034063 all species →	Biological Process	stress granule assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18749	LSM14, RAP55, SCD6; protein LSM14	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.