Gene detail

Detailed information of RMX54233.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1298:57797...66332
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00016915

AGCCACTTTTCGCGTGCTGTCAAACCCACGGCGCGCACATAAGTCTCTTTTTGTGCCCGAAAAAACCCCTCTGTCACCGTGAAATATTTTGGATCCTGGCACTTTGACACGCTGccaaggaaaaagagaaaacatttgaaacttCCGGCGTGACAGCTCGGGTCATCCCCTGATTTTTCGTATTTGTGTTAAATAAGACGGCTACTAAGATTTTCTTCCAGACGTCCGGCTCGAGCGAGAGCAACAACACGTTTAGAGAAATGGACCGCACGAAACGCCAAGGTTTGATGCTCGTTCTGGCGCTTAGTATTTCGCTGTGTTCATTAGCCGACGGTGCCTGCGTTCAGGAAGAAAACGGAGGTCCCGTTCATTGCTGTGATCAAAGAGAACATGGCGGTTCTCTTCAATGTTGCGGCGGCAGAAACAGCAGTTGTGGCATGGAGGATTACGTTCATAATACTATTTGCTACTGTGATGAATTCTGTGAGACGGCCGCGGACTGTTGTCCTGATTTTGAAAGTGTGAAGAGACCATGCGGCTGGGGAAATGTGAAGCAAGACTGCGTAGTTTCTCCATGGTCGGATTGGGGTCCCTGTAGTCCGCGATGCGGCATAGGGTTCAGACGGAGGACTCGGACTGTGACATTCCGACCAATGAACGGCGGAAGAGAATGTCCCCCACTTATAGAAAATAGCGGatgttttacaaaactttGTGGAGGCAAAGAATTAGGTTTTGCAAGAATTTTACCCTATAAGTTCAAGAAAGAACGCGCTCCTTCAGTGTGGGACAAAATCCTACCAGCGCCGAAGGAAGAAGTGAAGACGACGGAAGCACCAAAGAGGCCAAGCTATTGTATACATTACAAGGTGCACTTCAAGCACCCGCACTGTAGAAATACCTGGGCAGACAAGCTTGACCCACAGACCCCAATCTGTGTTGAGTGTCAAGACGAGGCTATGAACAAGCACGGAAAGTGTAAGGGCCAAGGGCTTTTTGGGGATGTGACGTTGTGGGAAGCAGTCGACCTCAAAAGCTGTTACGGTGGCTGGCTGAAGATTGGGCCAAAGATTCCCAATTGTACGtgccaaaataaacaattcaacaattttatatttatataaaagCATTAGCAGTATTTAGCTCATTTAATCAACAGCTTGCTTCATAAGGTCAACCGAGATGACATCATCCTGAGCTCACAGTCCGGAGAACGCTGATACGTAGAACATTCGATTTTAGTTCCAGTCTCTTTCGACGCTTTCTGTTGATGCCATTGCAAGGCCAATGATTGAATCAAACGGCATTCATTGTAATTCCACTTTTAGAGACGCAATCCTTTCGATCGGGGCCATGTCTTGCAAGGTTCGATCAACCAATCTGAACTTacgaaaaattgtttcccCGAAAGCTTTTCAAGGCTAATTTGTACCACTGATTTTAAAGGATCGCGGCTCTGAAGACGAGACTGCATTCATCGCGCTAATATTTTGCTCGAAGTCGATTTGCTTTTTAATTAGTAATTGCCTGGAAACTATCTAACTATAATCATCTTAGAAGTGCTTTTCTTGTAACGGCCGTTAAGGGCAAAATCAAGAATTATGCAAAATCGTAAACTAATTCTTATCCGATCGTAAAATCTTGGCCAGTTTTCCTGGTGATAAAATTTAGGAATTTAGGAGGCAGACTAATtgtatattttagttttagctttttttgttttatacgTTGTAACGTAAAAAAACACTAGCAGCATCTAAGCGTTGACAAATTAGAATCTTAAATTAACCCGTGTAAACCGCTAGACCCAGTTCCCCTGAAACTTTGTTATTTCCCtgagaacaattttcaattgggcGTTGAAAGTATTCAAGGTTTACTTAACTtttctctgtgattggtccagaaaactcgcgccattcTCTCGTTCTCTCATTGGCTGTATAGGatattttccattcttctgattggccaatgCGGttcctttggttttggttttgacaCTATATCGAAAAGCgcacttaacccttaaattccCAGATCCATTAAGTGATTCACCTCACTGTTggccatacaattcttaagatgttagtttggagaatttggta

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19028 all species →	TSP1_spondin	Spondin-like TSP1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044004 all species →	Domain	Spondin-like TSP1 domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR039942 all species →	Family	Somatomedin-B and thrombospondin type-1 domain-containing protein	Interproscan
IPR001212 all species →	Domain	Somatomedin B domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20920 all species →	RPE-SPONDIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for RMX54233.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX54233.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.