Gene detail

Detailed information of RMX54312.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1285:40392...47036
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00021781

AAACGCTTCGCTTTAGCTTTCCTGTCCTGCTTAGTGCTCTGGCTATTTTGTGTATGCACGAATCTTAGTTTGGACTTTTGAGCTGTTTTATCTCTCTAACGTGAATTTCAGAGATTGATCCTACGAAAGTCCTCAGTTTTGGGTCATTGGTTGACAGTGGATAGCGAATTTTGCCAGTATGAGTGCAGGAGATGACAGAAAAGAACTAATTCTGAAAGGATTTAAGTTGTCAGCTCCAGGACCTGAGCATGAGGCAAgagtaccaaaaaaaattttaaaatgcaaggCGGTCTCCAGAGAGTTAAACTTTTCTTCTGAacaagaaatgacaaaattcaGACTTGAACAAAAAGTCATGTTCAAAGGGAAGTGTTTAGAAGAatggtattttgattttggatttGTGATCCCAGCATCAACAAACACATGGCAGTCACTCATAGAAGCTGCTCCTGAATCACAGATGATGCCTGCACAGGTTCTGAGTGGCAACGTGGTGATTGAAACAAAGTTCTTTGATGGAGAcctccttgtcagcacatcAAGAGTGCGAGTATATTATGTCTGACTTGGAcgaagaaaacctttttctatACTCTAACTTTGTAAAGCTTTCGGGATGCTTTCCATTTGTCAGAACTGGCTATTCCAACTATGGTGTCTGTAAATGTAAAAGGTCCATTCCTGACCTAACTGGCACCCTCCATCGAGTATGGCCAGTTTAAGCCTGTTTTCTCTTGCAGACCATTCATGAAATGCTCTTGATGGtgtgaaaataattgttaaaacttCTGGCATGAAAAACTTCTGGGAGAAAACAACTCACATGCCTTTGCTCAAGAGAAGTGAACTTTCATTCTCCATTTACACTGGCTGGAACTGTTTCCTACATTCTGGCCAGAGCTGGTAAATGGAAAGCACCGTCAATGTACAGTGTTATAATCTTTAGgacaTCTAGTCAATGATCACTTTCACCCATGTGTTAATAGCAGATGCTTCAGTGAGAGTTGAAGCATAATaagattttgatatttgtttttcagtcctTGAATATCAGATGATTactacaattttcaattgagagAGGTGCAAATGGATGTTTGGCAACCATGTTGTGACATTAAAATCATATTGTTGTCATGAGCAATTGGCCCCATTTCCAGTGGCAAGGTGTTGTGTGAACTCTATGGTAGAGTTTCATGTTTGATGGTTAGCCACAGTTACTAAGGGAAGCATGGAAGGTTGCCTGTGATAACACCTTAATTTTAGGGTTAAAACCCAGTCACCAAGCTTTTAGTGTGCATCACTCAATGGATAACTATAGAATCATTATCCAATTTCACTTTGTCAATGTGATGTTCAATTGTTATGGctgtgaataattttaaaagtccTTTTGTTGGGATTGTCCAATGGAAATTCTCTGTCAGTAGGCATCTTTTCGgggttttctttaagaaatatGGTTCAGGAAATACTGTAGAGTAATGGGATTGTATACTGCGTGACAGTTCCACATCTGAATGTGGAAATGCTAGGTCATTGGACTTGAGTCAGCGAGTTCTGTGCAGCAAGCAGATAATATTCTGATCTTCATTGCTAAATGAAACCagttttttgattttctcacTTGTGTACATACACTAAAGCTCAGTTTTAGAAATTCACACATTTTAGATCCATACAGATCTGCAAAGTGTCCACATTTGAATATGTACTCCTGATGTAATTAGTAAATggtaatgaaaagaaatgaagggaaaaaaaaagaaatctaggAGGAGAAATGATGGTCTGCCTCCCCTTTGGGTCTGTTGTTATAAGAAACAGAAACTTTCTGGGAAAGCAAATGCAGCAGATTTAGCTTGCCAGttagatttatttattaaaatacatCAAGTAGTTTAGCTTTGTCCTGCTCAACTGTGGTGGTTCTTGTGAGAAGTGCAGGTTTTCTCCCTGGTTGGTAAAGCTAAATGTGTTTCATCCCGTAGAGTGGTCATGTCAAATGATGACTTTTTAATGTAATTACGACATATATACTTGAGCATTTGCATTGCATACATGCAAAATTGTGTGCTAtgtaatttcttgattttggtgtcatatttttctgtgataattgattgaattgcaaatttgtGATTACTTTGTCAGTAGTACAGCTGGTAGTTGTTGATAGGATTGTATAACAGCtgtaaatcattcattttgccacaataaaagaaaacttcgaGACACATA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05351 all species →	GMP_PDE_delta	GMP-PDE, delta subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR037036 all species →	Homologous_superfamily	GMP phosphodiesterase, delta subunit superfamily	Interproscan
IPR008015 all species →	Domain	GMP phosphodiesterase, delta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12976 all species →	RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13758	PDE6D; retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.