Gene detail

Detailed information of RMX54313.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1285:68320...81601
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00021786

CGTGTGTCTTAACGGACTGAAATTGAAGATGTTCGTAATTCTGTTTCACTTCTCTGCGCTGTTTTCATAGTTTTTAATCATGCTGGTTGCGCGATCGGTTGTCAGAAGTCAAGGCCTGAGAATCCTTGGTACTAGAAGTGTAGTTTCTCTGCCTCCCAATGAACCAGCAACGAACTTGAACCCAGGCAGCACTGACCTTAAAGAGTTGAAAGCAGAAATCCAGAGAATTCATGGTGAATGCCTGGAAATTCCATGTGTTGTTGGTGGAAAGGAAATCTATACTGGAAACACAGGATACCAAGTGGTGCCCTACAACCACTCTCTGAAGATTGCCAAATTTCACATGGCAACTGAgGAAGTGATAAAGGAGGCCATTGACAGTGCCATGGCTGCAAGAAAGGATTGGGAACGTACACCTCTTGAACACCGggcAGCCATCTTTCACAAGGTTGCAGATTTGATTACGGGAAAATACAGAATCCCATCACTAGCTGTCACCATGGTGGGACAGGCTAAAACTGCATTTGAGGCTGATATAGACTGTGTTCAGGAGATAGCTGATTTTTATAGATTTGGAATTCATTATGCAAAGGAACTGCGTGATGGTGTAGAGCTTCACCAATCTAGAGGGGCAATCAACCAACTCAAATACAGAGGTCTGGAGGGTTTTGTTGCTGCTATTTCACCTTTTAACTTCACTGCTATTGGTGGAAACTTAGCTGGTACCCCAGCAATTGTGGGCAATGTTGTTCTCTGGAAACCTGCCTTAACAACAATGTTGGCCAGTTACCAGGTGTACAAAATCTTCCAAGAGGCTGGTGTTCCTGATGGTGTTGTGAACTTTATTCCATCATCTGGCAAGACATTTGGAGATGTGATAACAGCATCAACTCATTTAGCAGGAATTAACTTTACTGGCAGCGTTGAaacATTTAGACACATTTGGAAAAATGTCGCAGAGAACATTGATATATACAGaaCCTTCCCAAGATTAATTGGAGAATGTGGAGGAAAGAATTTCCACTTTTTACATGAGTCTGCTGACATAGACACGGTGGTTAACTGCACCATTAGAGCATCTTATGGGTATAGTGGTCAGAAATGCTCCGCGTGTTCAAGAATTTATGTTCCAGAATCCAAGTGGGCAGAGGTTAAGGAACTTCTTAttcaaaaacacaaagaactgaaaatgGGTTCGCCAGAGGATTACGATACCTTTTTGTCAGCGGTTATTGATGGCAAGtcgtacaagaaaataaaagagtacATCGATTATGCCAAAGAAAGCCCAGATCTCAGTATTATTGCCGGAGGAAAGTGCGATGACAGGCGAACGGAGGCATGCGCGAGTGTGGGTTATTTTGTTGAACCAACTATCATCGAGACTAAGAAACCCGATGACAAACTCATGAACGAGGAAATTTTCGGCCCTGTTCTTACCGTATACGTATACCCAGACCAAAAATGCAAGGAGACGCTTCAATTAGTAGACAAGACTTCTCCATTTGCTCTGACCGGGTCCATTTTTGCAAAAGACAGATATTTTATCCAAGAAGCAGCTGATATTCTGAAAGATGCAGCTGGTAACTTTTATATCAACGACAAATCAACTGGATCTGTTGTGGGTCAGCAACCTTTTGGAGGCGCGCGTCTTTCAGGAACAAATGACAAGGCAGGCAGCTCTCATTACATCTTGAGATGGGTCTCACCACAAAGTGTTAAAGAAACCGTGGTACCAATCGATGACTACAAATATCCGCATCAATCATGAATTACTTCAGTCAGTGTTGTAATTTTCTGAGAAGAACAGAATGTATTCGATGGTTTCAAAGCAAATTTCTGCTCTCGCTAAGGGCGGGAGTGAATGCAGTAAAGGAAGTAAGGAAGAATTCGGAAACTGTCCAGAAATCATCGCAAATGATTTGCAGTTTTAAATGAACGATTTTTTAACAAGCGTTTCAAAAACGTTGGGAATGAGATTGCTctatttacttgaaatttaattcgaataattttgggaaaattttgtaCAGAAGATGCATTGATATCAAGCCATACGTAGTGAAAATGTGCATGGTTTCTTATCAAGAACAAATGTCTTGAGGAAAacgaataaataaatcaattatctAATTTTAACCACTGAATATGTCACCTTGAAGATTTCCCAGCGTTCAATTAAGATAGAAGTCCAAATAACGGggtatttaatttatttttctggccttgtgcaaaaataaacatgatcGTTTTCAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR050485 all species →	Family	Proline metabolism enzyme	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR005931 all species →	Family	Delta-1-pyrroline-5-carboxylate dehydrogenase	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016160 all species →	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR029510 all species →	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42862 all species →	DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003842 all species →	Molecular Function	1-pyrroline-5-carboxylate dehydrogenase activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0010133 all species →	Biological Process	proline catabolic process to glutamate	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00294	E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase	EC:1.2.1.88	Arginine and proline metabolism	ko00330	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.