Gene detail

Detailed information of RMX54364.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1277:63663...77684
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00018403

TGTGTACACTTAGTGaatatgatttttcttgtgtgCATACAAGTACTGTACATGACTTTGCATTAAAGTTACTGATGTGCATGTGTgtgatatacatgtatatcacATAGCCATAGGCTAGTGTGCAACTGATAACATAATTTGTTCATCCTTATTTCCCTTCTTCCATCTACTTAATTTATGGTGTCNNNNNNNNNNtctgtctgtctgtctgctcTTTTGTGTATGTTCATTCTTCCAATCACTGTCTTTCTATCTGTCACCTATTCTCCTTGTTCTCCTCTGTCCAGTCACCCACACGTCAGTTTTACCACCACCTTAAATTCCACCTTTAGGTTCATCAGTTTTACCACTACCCTTCATTCCACCTGTAGACTTGTTTGTGTTACTTAACTTGAGTtacaagaaaggaaagttttttgttttgtttgtttgtttgtttgtttgtttatttttaaatctacataggattttgaaagtaaaggtaattttgtttttgtgcagGAGAACCAAGTCTGTTATGGGTAGACAAATATCGGCCTCGTGCAGTGAAGCAGATTATTGGTCAGCAGGGTGATAAGAGCAACATGAGAAAGCTGATGAACTGGCTGAGAGACTGGgaaaagaacagaaagaaaCCAGCCTCTAAATcTTCCTTTTTCAACAAAGATCAAGATGGGTCTTCCTGTAAGGCAGCTCTTCTGTCCGGTTCCCCAGGAgttggaaaaacaacaacagctaCACTGGTTTGTGAAGAGCTTGGTTTTACGTACATTGAAATGAATGCCAGTGACACACGGAGCAAAAAGACCTTGGAAGAACACATTTCTCATTCACTGAGCAATAAAACCATGGATGGCTTTCTTACAGGTTGTCAAAAAGCAGACCCCAGTAAACATGTTCTCTTAATGGATGAAGTTGATGGAATGGCAGGAAACGAGGACAGAGGAGGAATGCAGgaaCTCATATCACTGATAAAGAGTTCAAAGATACCCGTCATCTGCATGTGTAATGACAGGAACAGTCCCAAAATGCGCAGCTTGGCAAATTACTGTTTTGATTTGAGATTTCAGAGACCTCGAGTTGAACAGATCAAGggAGCCATGATGAGCATAGCATTTAAAGAAGGACTCAAGATACCACCCCAGGCCATGGAGCAGATTATTTTAGGGGCAAACCAGGATGTCCGACAGGGCGCTTTTGATGCTGTGAGGAGACTTCTCTCTGGAGCTGAGAGTTCGAAGatgaatttgattgaaaaatccGACATGTTCTTTTGTGATTACTCCATGATGCCTCTTTTTATGCAAGAAAATTACCTCATGGTTGACCCAAGTCAGAGCCGTGGTGATATCAAGAAGACACTGTCACTCGTTAGTCAGACCGCCGACTCCATTTGTGACGGAGATCTGGTGgaaaaacttatcaggcaAGGAGGCAACTGGTCCATGTTACCCATGCAGGCCATGTTTTCGTGTGTGATCCCATCGACCTTGATAAGCGGGGGAATGGGTCAGAGGATTGAGTTTCCTCAGTGGTTGGgtaaaaattccaaatatgGCAGGATGGACCGCATGCTACAAGAACTGAAGGGTCACATGAGATTAAGAAAAGTCCTTACCAGGCCCCTTATGACTCAGGAATCAGACCAGATTAACCCTGGCGTGTCCAGGGTCATGCAAGTAATGGAGAACTATGACTTAACCAAAGAAGATTGGGATTCTATCATTGAAGTTGGTCAATTTGAAGGACAAAGGGATCCAGTTGCGTCAATTCCATCAAAGGTGAAAGCTGCATTCACGCGCACCTACaataaagaaagtttcaaGACACCTTACGCCATCCGCGCAGCGCCAAAGAAGGGACGGAGAGGCGGCGCAGAGGACGAACAAATGATGGAGGAGGCGGGCGAGGGAGATGCGTCAGCGGTAGAACCACAAAATGACGACAATGATGACCTGGAGAATAACCCCATGATAAAGGCGTCAAAGAAACCAGCCAAAGCAGCAGCAAGCGGTAGGAGTAAAGGCAGAAAATCAAAGGAGTCTGTTAAGAAAGAAGCGCCAACATCCAAGGGAAAAGGACGAGGGAAgaataggaaatgatcagttTGTGCAGGGAAGCGCACCTTCATCGGGGAAATAATCGTGGGACTAGTATATCATAGAAATATAATAACATCTATGAGTGGAtgaaaaatatggaaaagttgaaagaaaacatgacaaaGCCATGAGATATCCAATACGTTGTTGTACtcatacaaaaataacatggCTGAATTTTATAATCGTGTAAGAAACTTTCACTTGTGAAGGTGTTGTGACATATACTATCGCCAATcgtataatttgttttaataaaattgtgaCTCG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF08519 all species →	RFC1	Replication factor RFC1 C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR012178 all species →	Family	Replication factor C subunit 1	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR008921 all species →	Homologous_superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR013725 all species →	Domain	DNA replication factor RFC1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23389 all species →	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003689 all species →	Molecular Function	DNA clamp loader activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005663 all species →	Cellular Component	DNA replication factor C complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10754	RFC1; replication factor C subunit 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.