Gene detail

Detailed information of RMX54548.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1249:125774...138651
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004566

GGTCATTTCCGGATGGAGTGGGTTGAATCGCTGTCAGCTctattttggtaaaaaattttgaactaaATATGACGAAATCTAAATCTAAGAGCAAGAAAAGCGAAAAGGGGAAGGAGGTCAACAATTCTGCCAACGCTGGCGACAGCAGACCCCCTAGCGCTTGTGACATACGTCCTCCTACTCCGGCTGTTGTGCAAAGTCCGGTGACCCCAAGCTCCAGACTTCCAAAGCCATGGTTTCAGAGCGAAATTCTTAATATGATGTTTCTCTTAAAGAAACCTTTGAGTGCATGTAACAATACGTTACTCAATAAGGAGCCCTCATATcttttcatatattttgaCCTTGATGTGGTTTTGATGGAAAACGTTGAGGAGTGCTTGTGGCAAATAAAGCAAGCACCTCTCGTTGTAGCAACAGGGAGACTTGATGGCTGCATGGGTGGTGCCTGGGACTATGGCAAAGTTGCAAGACACTTAACCCTGTATGCTTTTGGTGACTCAAGAAAACCATCAACAGAATCAGCTCTTCTTATTGAAGAAATTGTCCATTCGCAGATGGCTAGCttgGTTGTGCGGGCTGCAGAGGTCACAAATATGCGAGGGGGAAGGTTTATGAGTGTGGAAGACATTATATTTCTAATGAGGAAGGACAAAGAAAAACTCAAAAGACTAATCAAGTATCTCAATTTCAAAGacgtgaaaaacaaaacccagAAACAAACTTCtcaagatgatgatgaagtcCTAGAAGCTGCAGcaAGTGAAACCAAGGGTAGCAAAAAACGAAAGGTTTCATATGACTTTGTGAGCACAATAGACCAAACTGgtgATCTTGTAGCTTTATTTGAGGATGATGACATTGATGAACTGAAACAAGAGAGGAATGAGAGAGCTGAACGTTTATCAAGAACTCTTGACCCTCAACAATATTTGGAGTTTACTGAGTGTCGACAGGCTAACTTCAataaGAAAGCAGGAAAATTCAAAGAGTGGCTGGACTGTGCATCACTGATTGATATGAAACCCAATACACCTGTGATGGAAGTATTCAGCTTCCTTGCTTATGAGATAGTGGGGCAGATAGTCGACTTGGCATTACtggtaaagaaagatttggaGGCGTGTGATGTGTTGACTCAAGCTATGCCACCTGTATCTATCCTATCAGAGAGCCAATCATCCGTTGTTACACCTGGAAGTGCAACATCTACCCCCTCTACTCCCAACCACACCCCACCTGGAACCCCCACCACACCTACAACCCCTTTCCTTCCTAGTCCCACCCCAAGTGTATCTAGTGCCAGTGGAATTTCATCAGCTCCACAAAGTGCAACTGTGCCAGCAAAACCTAAgagcaaaaaaaggaaaattaaaGGATCAGCTGCAAGCCTTTCATACAGTAGTGATGATTGTATTCAACCTCAACACATTAGAGAAGCTATTAGGAGATATAATCATTACATTGGACCTATGGCTCCTTTCTCTGTAAGTTTGAATTGTTTCCAGGATTGTTGTTGCCTGAAATAGTAAGTTTAAAAAGAGACAATGGTTATGAATatcacacatttccttgttagaGATTTATTGGACTTGACCATGTAAAATGTTAATAGTGTTACAATCATGTTGAACTAATATACTAATGATTGAATATACTTTGGATTTATTCAACtacaatttgagaaaaataaagaaaatatttagaaaaaaatagaaaaccaAAATGTGCATCCTTTGGAAGCAACTAACCCAAATTTCACCactgacattttcatttttgtcatcttCCATCCTTCATAACCATCCTACTCTTCTATGGTCCAGCTACCTGTCAACAAAAAGGCTTCTGCAGCTTTCTGATaattaaatgtatttaaaacttttttcctcagTCACATGCAAAGCCATCACCTGGCTACAGAACATTGTGCTGCTAGATGGAAGACAATAAATCAGCTGTAGCATCTGAACCCTAAAAACACTTTTCACTGACTGGaagcagtttttcttttagcttcCCTCATACACTGTACAGTTGAAATgacaatcatttatttaatataaatGTCTATAGAGAAATATAGCTACAAAGTTTGTGTATTATGTGAAAAGtatataaatgtttttgtttcaataaatagAGCTCCAAGACATA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02269 all species →	TFIID-18kDa	Transcription initiation factor IID, 18kD subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003195 all species →	Family	Transcription initiation factor IID, subunit 13	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11380 all species →	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0043966 all species →	Biological Process	obsolete histone H3 acetylation	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11313	SUPT3H, SPT3; transcription initiation protein SPT3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.