Gene detail

Detailed information of RMX54555.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1249:483847...496961
NR annotation: no NCBI-NR hit recorded
Species abbreviation PDAMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00004605

TCAGGGTGCTTGTTCTATCTCAGTtactacaaaatatttatggtATTTGATCTACTCTAAACTAATTTAACCTAGctctattttatttcaaattcaccACTACATGGCTGTTAGCACTTTTTTGTAAGCTTATCATGTTGTCTCCTCGTCACTACTCCAAGAATCCTGATAAAGATTGTCAAGTTGTTTTGTATCACAGATACCAGCTTCTGTCACCTTATTGTTTTCATCCTTAGTACTACGATTCATCTCAGGGAgccaaaccaaaacatttgtGTCATTTGCTCCACTAAACAGAGTTTGAAAATGTGGATGAAATGCACAACAGTTAACATTGTTATAATGACCACTGAAAGTGGCAACATGTTTTCCTGTAACAAGTTGATACACTTCTATTTTGCTCCCTGAAGGAACAAATGCCACTTCATTGGAAGTCCCACTGGATAGACAAAGCTTTACAGATTTCCGACTGGGATTGTGAACTCGACCAAAGTTAACCAGTGTGTTCTTTCCTGTGAATGTATCCCACAACCTTAACCGATCATCTGTTCCAAAAGTCAATAAGTATAATCCATCTGGTGAAAAGGAAATGGCATTTACATTGCCATTATGAGCTGTGTTTATTGTTGAAGATCTGGAACCAGCTTTGCCATTGTGCTGATCCAGTGAGAGTATACTTCCAACAGCTTTGCGCACATCCCACAAGAGCACCTTGTTGTCACAGCTACCTGTAGCTAAAAGATACTCATTTCTTGGTGACCACGCTAGAGAAACAACTGCCTCTGAATGCCCCTTTAGGATATGCATTGCAGAACCAGATTTCAAATCACAAAGATAAACTCTAGAGTCTTCACACGCTGTTGCAACTAAACAATGTCTTCTAGCATTCTTTGGCATTTGGTGTTGGTAAACAATGCcttcaagttgaaaattttcgaCAACTTCGAGAGCATTTGTGTCCCAAACTCGAAGCGTCGTATCGACTGAACTTGATATAAACATTCCTGTGTCATTCGGGTACCACTGTACAGTTTCCACGCTGAGTTTGTGGCTGTCTTTCAGTGTTCCGTCCACTTTGGCGACCGTCTGGCATTTAAAAACGTTTGAGTAGAAACAATCCTCTATATCATGAATAGCGATCCCGCCATTTGAACTCGAGGATAACAAGTATTTTCCCTCGCCTGCATCGATATCAATACATTTGATCCCCGTTTTGTGGACCAATTCAATCTCGCCATTTTGACTGAGTTTCAGAGATCGCACGCGTTTCGTTCGCTCAGCTTGGGAAAAGCGATAGGTAGGACATCTTGCTTGTTCTCTCTTGTAGAGAGACTGAAACATTTGATGTTGGGAAAGATCTTCAACAGGTCCTTGCCGAGTGGAAGCGAAAGTTGTTGAATAAGCAAAAATCAACCAGGCATTGTTGTGAGTATGGTGTGTGCCAGATAGGAACTGGGTGCGAAAAACAAATCACCATGGCGGACATGTGATGAACCAGCGCTTAATCTGATAGTAAGGATGCCTCTTTCTTGCAAGATCTGTGGTAATAAAGCAATTCTAAAGCGACCTAAAACGGGTGATGCTTTGTGCAAGGATTGTTTCTTTGTCACATTTGAGAAAGAAGTCCACCACACAATAATCTCCAataagttgttttcaaaagggCAAGTTGTTGCTATTGGTGCATCAGGCGGGAAAGATTCTACTGTATTAGCATACGTGCTGAAAAAGCTCAACCAGGAATATGATTATggattaaaattgattttattgtcTGTGGATGAAGGAATAACTGGTTACAGAGATGACTCTTTGGAGACAGTcaagagaaatgaaatgcaGTATGAACTGCCATTGAAGATTGTCTCTTATGAGGAACTCTATGGCTGGACCATGGATGCTATTGTCAAACAGATTGGACTAAAAAATAACTGTACATTTTGTGGAGTTTTTAGACGCCAGGCTCTTGACAGAGGAGCAATGGCCTTAAAGGTTGATAAAATAGTGACAGGTCATAATGCAGATGATATAGCAGAAACAGTTATTATGAATAttttacgaGGGGACATAGCTCGACTGAGAAGATGTACTGCTATTATCACAGGTACAGAAGGCTTATTACCACGCTGCAAACCATTCAAGTATACTTATGAGAAGGAAATAGTAATGTATGCATACTTCAAAAAGCTGGATTACTTTTCTACAGAGTGTATTTATTCTCCAAATGCCTACAGGGGTCATGCCAGAACATATCTTAAAGATCTGGAGAAAATACGTCCAAGTTCAATCTTGGacATAATTCACTCAGGAGAGAGCTTGTATGTGAAAAAAGATGTAAAGATGCCAGTACAAGgTTTTTGTAAGAGATGTGGATATATATCAAGTCAACCATTGTGCAAAGCATGTGTGCTGCTAGAAGGACTCAACAAGGGATTACCTAAGCTGGGAATTGGAAAAACAACCAAAGCTCAGATTGAGGTCTTAAGCAGTGCTCATTGTGGGGCAGATTCAAACTCTGGAAGAGAAGACAGCAGCACAAGCACATCTCTGGAATTTTGATCTGACTTTCATAATAAATTATACTTGAATTCAAAGCTTGCAGTGAgttcttatttctttattgtacATGGGGCacttgttaaaacaaaaagtttttcgttttgaaagtttttgacaagtcaaaaccaaaatacattGATCCAagtgattatttttatctgcAGCAGAGATATTGCAGTTGGTATTACCTGATACTGCATCACCAAGGTTCTGCTGCTATCACCCTCCAAGGTTTttgatgtttacttttttaacattttcagtCTAAGATAGACCGAGGAGCTTATTCACCTAAAAAAtaagttcaatttttctcatttctaaCACCACCATGCATGCAAAACTGAAGCTATAGGCAGCCTCAGCTTTCAAGAATCATCCTTTTTTATCCAATTCGAAACGGACTTTTCTCCACCAAACGCTAGAATCAGTGAATTGACCACAGGGTATCCATTATCACATTGATAAAGCAAGTTTGACAGAAACTGTCGAGGAATAGGCTTTTCCAACCATAACTCTTGTACGAAAAGAGACACCAGTTCATGGACAACAAGGTCTTGATCTTGATGATCACGGTCCTCCAAGTCACTGCAAGGATCCggaagcaaaggaaaaatcacTTCTTTGAGCTCTTTAATTATGTTATTGTAAGGCTCTTTGGATACAAGCTGGAAAACTGTCGGCTGTGGTGAACTTTCTTCCTTATCCTGTAGTTTGACTCGCTGCACAGCAGCAAGCAGAACGAGACAAATCATGTTGAGTTCCTTCATCACTGTCAAAAGAGAGCTCTTAGGATCATCCCGTCTGAGATCACCGATTTGTACGGAGCTCTTTGTGTTTGTGGGTGGAACTACTCTAAAAAGCTGCAAGATAAGCTTGACTTCCGATTTCTCTGTCACCAATAGATCTTGAAGCGTAAGGTCTTCCacaagacattttttaaaccaacGCAGCAGCGAAGGAATGCAATTTATTCTTTGGTCCTCGCCTACCAGAGGAGTTTCAAAGTTCAAGACTTTTCTTTGACATTGCGCTAATTCAAAGTGCCAGATTAGACGAACAGTGAGATGTGTTTCCACGCCAGACGGTTTCCATGTTAAGAGCACTGCTAGCAATGAAGAGAGACTTTCTGTTTTGAGATCAGCACGCCCTTGCTCGGGAGGTGCATTTGTAGTTTTTAGAACCCCGTCACACTTTCCAGACAGTTTCAAAGTTGTAAGCAATTGATTCAGCATCACCGtttcttgaaatgtttcacACCACAAGCGCAACAAGTTAATAATACGGTCATATGACAAGCCAGAAGGTTTCCCATTGGTTTCCAGGCAGGTCAAAACGGACGCCAGAAGGCGTAAATAACGACAGATACAATTCACACTTGAACACGATCTGAAAATTGAGCAAAGTATGAGTTacgaaataaattaaaatgttgcTGGTTAGATTACGAATGTCACTAGAGGTTCTTATTAGGCCCTTCtctattttcatgattttatgGAGGTCGCCGttttaagagttttatttGCTCAAACCTTTTGGCCTTTTTATCAGCGCAAGGTTCGCATTTGTGAGTGTTTTCTGATTATACGAAGTCATCTTTGATTACAAGCCTTAGTTCTTTGATTGCCATATGCTCTTTACTGTAAACAAAAGGAAGGGAATGACTGTAGAGAGAAAAGGCCGCGATGATTTCGCGTTATTTCTGCGTGCTTTTGCAGAAGAAGCCAAAGGCATTTTGAACGATCCTCAGCTTTTGAACCACTTTAAGCCTTTTTTGGAACAACAGAAACGAATGGCTTCTAAAAGACGCATGGGCAATGATTGATATTTAGTTTACGATGAAGATAGTATTACCCTTCTGCAGGCCGGGTAATTTATGGAGTGATCATAAAACCTTCGATTTCAGTTTTGTGATACGAGTTAATAAATAGTCTCAATCAGtcacaatttttgtctttaccTGAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01171 all species →	ATP_bind_3	PP-loop family	Family	Interproscan
PF16503 all species →	zn-ribbon_14	Zinc-ribbon	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011063 all species →	Domain	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	Interproscan
IPR035107 all species →	Family	tRNA thiolation protein, TtcA/Ctu1 type	Interproscan
IPR000541 all species →	Family	Cytoplasmic tRNA 2-thiolation protein 1	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR032442 all species →	Domain	Cytoplasmic tRNA 2-thiolation protein 1, C-terminal	Interproscan
IPR020554 all species →	Conserved_site	Uncharacterised protein family UPF0021, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11807 all species →	ATPASES OF THE PP SUPERFAMILY-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0002143 all species →	Biological Process	tRNA wobble position uridine thiolation	Interproscan
GO:0002144 all species →	Cellular Component	cytosolic tRNA wobble base thiouridylase complex	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0034227 all species →	Biological Process	tRNA thio-modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14168	CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1	EC:2.7.7.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.