Gene detail

Detailed information of RMX54599.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1237:8472...14375
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00014087

TGACAAATTGCTATTTATCACTGAGTTGTGACATTTgtattttccatttgttctGCTTTGTATTCGTTAAAAGTTTACCGGTTTGCGTGACTTTTAGTCTACACTCAGGCCTTGGAGTATTTCCAGTTTCTTGATAGCGCACACCGacaaggctttttttttcttcagATGGGATATTCTCAATCGAAAGCTAAAAACCTGCCTGTTACAGATCAtctatcaaaaataaaaacatgaaacaaagcaggtgaaaaaatgtttcgtgCTGATTAAGAGACATGCTCCCGTGTTACAAGTTCAACAGCAgcaaatcaaacaagtttATCAAGCATATGTTTCATTGCAAAGCTATCACCTCCCAGTGAACTATCCTCTTATACTTGAGGATTGCGGTagagaatttaattttaactaTATTTTCCTATCTTCTGATTCTTcgttcatttcctttttataaaTTGTGTGACGGTTCAAGGTACTATACAGACAgatctatttattttcacattaCAATGCGAAGGAGGTGGAGTAGTTTGATTTATTGTTGAATCTTTAGAACTGAGGGGGAGTTGTGAGTACAACAGACATTTTAGGACACTGTAACATGAAAGTTCGGCTCGATCTCGTTTATTAGACAGCTTTGACAAATTGCAACTCACATTCTTGCAAGAATTTACATGGAAGTAATTGGAGAATACTTCTGACTTTTTGTCCCTCTTCCTCAGCCTAGGTCACTTGCAAATATCTTTCAATATAATTTAGCAAACCATCAAATGAAGGACGTACTTTGACAGTTAGAAAGACTTTTTGAATTAATGAATTACTTCATGGCTTCCCCTGTgggatacaaaaaaaaaatttttcgaagTTACCATTGTGATTCAAGTTTCGTATGAAGATGAAGGAAGGTTTATCTGAAATGCTCAGATCATTTGGTCATGAAGCATTGTCAATAATTATAATCTGTGTTAATCTCCATCAGTCTTATTCATGGATATCATTTCACTGCAAAATGATATAAATACGACCACCAAGGTTCTCAAACACAAAAGCTGTGAATTTAATACTCGAACAGTTAATAGTCAAAGCAGAACTACAGAGCTGTTAACAAGGCAGGGAAATTTCTCTAACAGTTCTGGTTATTCAGGTACAGACGGGGAAATTTCTATATCAATTCAGGTTGTTCAGCGTGATCACTGAGTTTACGTCATGGCTGTTCGTTTCCGTTTGCCCCAATTGATGAGAGAAGCTGCCGCTGAGTTCGCTTCTACATTCATTTTGCTGACGTTTGGAATAGCGTCAGTAGCTCAGATGGTTCTCAGCAAGTCGgagtttggaaattttttctccgTGAACTTCGGTTGGGGAATTGGTGTTATGCTCGGCTGCTATTGGGCTGGTGGAATTTCAGgcGCTCATATGAACCCTGCGGTCACATTGGCCTTTGCCGTCGTAAGAAGATTTCCATGGAAGAAAGTTCCCGTATACTGGGCGGCACAACTACTGGGCGCATTCGTGGCTTCGGCTTGTGTTTATGGAGTTTATTATGATGCCTTAAATGCATTTGATGGAGGTGTCCGTCGTGTACTGGGTGAGAAAGGAACTGCAGGGATCTGGGCAACATATCCTCAGAGTTATTTGTCAACTGGGAACGGCTTTGGTGACCAGGTGTTCGGCACGGCCTTGCTTGTTGGCTGTGTCTTTGCCATCATTGATAAGAACAATAACACTCCTGATAAGGGGGCGACACCTGTGATAATTGGGTTGACTGTGTTCGTCATTGGCGCTACGTTTGGATATAACTGCGGTTACGCTATTAATCCTGCCAGGGATCTGGGTCCGAGACTATTTACTGCTATGGCTGGCTGGGGCGCTGAAGTGTTTACTGCGGGCGACCATTGGTTCTGGGTGCCAATCGTGGGATGCTTCTTAGGTGCAGTTCTGGGTGCACTCGCTTACATCGGTCTGATTGAGATGCATCATCCCGAAGACGATCCAAGCAAGCCCGGAGTGGAACTCGAAAACATTACCATCAAAAGTAACCATGAGTAACCGAGGACACCTACCCGATGgacattgtgaaaaaaaaaataatcgttggctttttaTATAAGATAAATACATATCATGTTCACTTTGTATTTAAGTTACTAAGGATGCGCACTAGCACCGCTGGATATCTATTGAAATATTCTCGACAAGATCCACTTTCTGCATCTTACTCCTTTCGTTAGTTAAAACGGTGACCGTTTTTACATAGCTTTGAGATGAACGTTTCCAACGCTAATATGAACCTCTTTTTacatataaaattttaatgagccaaaaaattcaatcttaTGAACCAATGCCATAAGGTCAGAGATAAAAAAGACCCTCTACTTAGCATCTTACCATGTATGGACACGGTGGATGATATACTGACCTAGCATTCTACAAGTAAAGAGGGTGTCCACCATAATAGGGACTTTGCTGAAGCAATAAGTCTTTCCCCCTAGACGAACATTTCTATTAAGTGCAATGTGAGCTTGTGCATCGAAGTAAACTTGGGTATATTACATTTTCATCGTCAAAAGTCGTTTTTGTAAAGTTACAGTGTAAAACAAAGTTCCCTTTTCATAGGGCTTTCTTCTCTTCAAACATTCCTGTCAAGTCCACCGGTCCGAACCCAAACTATAGTAGAGAAAAATGgcgaaaaaagtaaaaaggcTACGAGCCCAATT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00230 all species →	MIP	Major intrinsic protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022357 all species →	Conserved_site	Major intrinsic protein, conserved site	Interproscan
IPR000425 all species →	Family	Major intrinsic protein	Interproscan
IPR050363 all species →	Family	Major Intrinsic Protein/Aquaporin	Interproscan
IPR023271 all species →	Homologous_superfamily	Aquaporin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43829 all species →	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006833 all species →	Biological Process	water transport	Interproscan
GO:0015250 all species →	Molecular Function	water channel activity	Interproscan
GO:0015254 all species →	Molecular Function	glycerol channel activity	Interproscan
GO:0015793 all species →	Biological Process	glycerol transmembrane transport	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX54599.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.