Gene detail

Detailed information of RMX54754.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1205:53500...68367
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00020442

ATGGTACCTTTACAGCGTGCGGTGGAGATGTCACGTTTTGGAAAGACAGAAGGATATTGTTGTACAGGAAATTTAACTGGCTGGACCAAATGCACCTTTGTAACAAAACAACCCAAGAGAGAAAAGTGGACTATTTCAAAAGAATTAAAGGAAGAATCAGACTTTTTGAAAAACTTCAAATGCAAGAAGAGAGAAAGGATCTTTCCTAAAGTACCCACTGCTCCTGCTGTTACGCCATCCAAAGCAGTAATCAAATCAGAGTTGTCTCCTTCAATGGCTTCTCCACTTTCTGCAGCAGCATCTGATAAACCACTTTCCAATATGAAATTCGTTTTAATTGGCAGACTTCAACAAAGCAAGGAGAAAATCACTAAGACAGTACAGGACCTGGGAGGATCAGTGGTGGAGAAGGTTAATGCCCTTTCGGATTGCTGTATTAGCACTCAAGCTGAGGTGGATAAGAAGAGTAAAAAGATGAAAGATGCTGAGAAGTATAATGTGCCAGTTGTCAGTGAAAAATATTTGGATGCTGTCAAAAAGGGAGGGGCTAAGCTGATGATCACACAACACAGTATTGTACCATGGGGAGATAAAAAGGGTAAAAGTATGGTTGATGGTTCTCCTCCTCCATCAGAAGCCAAATCAAAGATAAAGAAAAGTGCTTCAGAAGGTGGTGGTGCTGCCAAGAAGATGAAGGTTGCCGTCAAAGGTGGAGCAGCAGTAGACCCAGAGTCAGAGATGGAGGATACGTGTCATGTGCTAGAGGAGAAAGGAAACATTTACAGTGCCACCCTCGGCTTAGTGGACATTCGTTGCGGATCTCCAAGGTCAGCCATCGAAAAATTCATGGAACTCTATGCTGAAAAAACAGGAAACAGTTGGCTGAATAGAAAGAATTTTGTCAAACACCCAAATAAGTTCTACCCATTGGAAATTGACTATGGACAGGATGACGAAGAGTTAAAGACAACCATTGCAGCCGGAAGTAAATCCTTGCTACCTATGCCTGTCCAAGAACTTATTAAAATGATATTCGATGTTGAATCCATGAAGAAGACGCTGGTTGAGTTTGAAATCGATTTGAAGAAAATGCCATTGGGAAAACTAACAAGACGACAGATTGAAAGTGCGTATTCTGTTCTGGGGGAGGCGCAGAAATTAATTTCAGACGGAAGTAGCAGCAATTCTCTTCTGGATGCGTCAAATAGATTCTATACCCTGATCCCGCATGACTTTGGTATGAAGAAACCCCCTCTCTTAGACAACTTGGAACTAATTCAGGCTAAAGTGGGAATGTTAGATAACTTACTCGATATTGAGGTGGCTTACAGTCTGTTAAAGAGTGGTGATGAGGACTTGGCCAAGGATCCTTTGGACGTCAATTATGAAAAATTAAAAACTGATTTGGAGGTTCTATCTAAAGATGGTAAGGAGTTTTCTTTGATTGACGAGTACGTCAAAAATACTCATGCTGAGACACACCAACAGTACGAACTTGAAATACTTGAGGTTTTCAAGGTAAATCGTCATGGCGAGAAGGAACGATTCCAGCCTTTCAAGGAACTACACAATCGCCGCTTGTTGTGGCACGGGTCTCGCAACACAAACTACGCTGGCATTTTATCTCAAGGGCTCAGGATCGCTCCACCTGAGGCCCCAGTGACAGGTTATATGTTTGGGAAAGGCGTTTACTTTGCTGCATGTAGCACAGTTAGTATACGACTGTTTCAAGATATGGTGTCCAAGTCAGCAAACTACTGTCGAGCCACGCCCTCTGACAACATTGGCCTAATGATGCTGTGCGAGGTTGCTTTAGGAAATATGCACGAATTAACTGGGGCAAGCTACATATCAAAACCTCCAAAAGGGAAGCACAGCGTTAAAGGCTGCGGTAAGACTGGACCAGACCCTTCTGCGGACGTCACCTTAGAGGATGGCACGATTGTTCCTGTTGGCAAAGGATGTAACACAAGTTTTAACGACTCCAGCCTCCTCTACAATGAATATATCGTGTACGATGTTGGTCAAATTAATATCAAATATCTGCTCAAGTTAAACTTCAAGTACAAATACGGATGGGGAATAGAAGTTGATCCAATACCACATTCTCCAAACCAACATCACTAG

Transcript

rna-pdam_00020442

ATGGTACCTTTACAGCGTGCGGTGGAGATGTCACGTTTTGGAAAGACAGAAGGATATTGTTGTACAGGAAATTTAACTGGCTGGACCAAATGCACCTTTGTAACAAAACAACCCAAGAGAGAAAAGTGGactatttcaaaagaattaaaggAAGAATCAGACTTTTTgaaaaacttcaaatgcaAGAAGAGAGAAAGGATCTTTCCTAAAGTACCCACTGCTCCTGCTGTTACGCCATCCAAAGCAGTAATCAAATCAGAGTTGTCTCCTTCAATGGCTTCTCCACTTTCTGCAGCAGCATCTGATAAACCACTTTCCAATATGAAATTCGTTTTAATTGGCAGACTTCAACAAAGCAAGGAGAAAATCACTAAGACAGTACAGGACCTGGGAGGATCAGTGGTGGAGAAGGTTAATGCCCTTTCGGATTGCTGTATTAGCACTCAAGCTGAGGTGGATAAGAAGagtaaaaagatgaaagatgCTGAGAAGTATAATGTGCCAGTTGtcagtgaaaaatatttggatgcTGTCAAAAAGGGAGGGGCTAAGCTGATGATCACACAACACAGTATTGTACCATGGGGAGATAAAAAGGGTAAAAGTATGGTTGATGGTTCTCCTCCTCCATCAGAAGCCAAAtcaaagataaagaaaagTGCTTCAGAAGGTGGTGGTGCTGCCAAGAAGATGAAGGTTGCCGTCAAAGGTGGAGCAGCAGTAGACCCAGAGTCAGAGATGGAGGATACGTGTCATGTGCTAGAGgagaaaggaaacatttacAGTGCCACCCTCGGCTTAGTGGACATTcGTTGCGGATCTCCAAGGTCAGCCATCGAAAAATTCATGGAACTCTATGCTGAAAAAACAGGAAACAGTTGGCTGAATAGAAAGAATTTTGTCAAACACCCAAATAAGTTCTACCCATTGGAAATTGACTATGGACAGGATGACGAAGAGTTAAAGACAACCATTGCAGCCGGAAGTAAATCCTTGCTACCTATGCCTGTCCAAGAActtattaaaatgatattcGATGTTGAATCCATGAAGAAGACGCTGGTTGAGTTTGAAatcgatttgaagaaaatgccattgggaaaactaACAAGACGACAGATTGAAAGTGCGTATTCTGTTCTGGGGGAGGCGCAGAAATTAATTTCAGACGGAAGTAGCAGCAATTCTCTTCTGGATGCGTCAAATAGATTCTATACCCTGATCCCGCATGACTTTGGTATGAAGAAACCCCCTCTCTTAGACAACTTGGAACTAATTCAGGCTAAAGTGGGAATGTTAGATAACTTACTCGATATTGAGGTGGCTTACAGTCTGTTAAAGAGTGGTGATGAGGACTTGGCCAAGGATCCTTTGGACGtcaattatgaaaaattaaaaactgatttggaggttcTATCTAAAGATGGTAAggagttttctttgattgacGAGTACGTCAAAAATACTCATGCTGAGACACACCAACAGTACGAACTTGAAATACTTGAGGTTTTCAAGGTAAATCGTCATGGCGAGAAGGAACGATTCCAGCCTTTCAAGGAACTACACAATCGCCGCTTGTTGTGGCACGGGTCTCGCAACACAAACTACGCTGGCATTTTATCTCAAGGGCTCAGGATCGCTCCACCTGAGGCCCCAGTGACAGGTTATATGTTTGGGAAAGGCGTTTACTTTGCTGCATGTAGCACAGTTAGTATACGACTGTTTCAAGATATGGTGTCCAAGTCAGCAAACTACTGTCGAGCCACGCCCTCTGACAACATTGGCCTAATGATGCTGTGCGAGGTTGCTTTAGGAAATATGCACGAATTAACTGGGGCAAGCTACATATCAAAACCTCCAAAAGGGAAGCACAGCGTTAAAGgctGCGGTAAGACTGGACCAGACCCTTCTGCGGACGTCACCTTAGAGGATGGCACGATTGTTCCTGTTGGCAAAGGATGTAACACAAGTTTTAACGACTCCAGCCTCCTCTACAATGAATATATCGTGTACGATGTTGGTCAAATTAATATCAAATATCTGCTCAAGTTAAACTTCAAGTACAAATACGGATGgGGAATAgaagttgatccaataccacattctccaaaccaacatcactag

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02877 all species →	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF08063 all species →	PADR1_Zn_ribbon	PADR1 domain, zinc ribbon fold	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF00644 all species →	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036616 all species →	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan
IPR036930 all species →	Homologous_superfamily	WGR domain superfamily	Interproscan
IPR004102 all species →	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR012317 all species →	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR012982 all species →	Domain	PARP1-like, PADR1 domain, zinc ribbon fold	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR050800 all species →	Family	ADP-ribosyltransferase diphtheria toxin-like	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR008893 all species →	Domain	WGR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10459 all species →	DNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX54754.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.