Gene detail

Detailed information of RMX54794.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1188:188618...193931
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00014130

GAACAATTGACTTGTGGAAGCTGTGAGCAGGATGCAAGTTAAAATATTGGTTAAATGAGATTTGTGAGATCTAGGAAgtcttatatttttatcagcTTCGGCCTTATAAtagctctttttctttttacacaCTGGAGATCATACAAAattcttgttgaaaaaagTCACGAAGAAAGAGTGACACATGCTAAAGACAATAAGCTTGGAAGTCATGATCAGCTGAGCGGGAAGATGACCCAGCAAAACTGCTCACCGGAAAGTGGCTTGCAAACATCCGCCCACTGCAGAAAGAAAGgTATCCTTGGGGTGGCACCctcaaatttatcaagttATAAGCCTAACTTAATGGGCCTCTTTGCATGTTTGTCTGGAGAACTAAGCATCAGTTGGACATCTGTTAATGATGATTACTGTGATTGTCCAGATGGTAGTGATGAACCAGGCACAGGAGCATGTCCAAATACAAGATTCTACTGCGCTGGTGGAGAACATTACTTTCCCTCTTCTCGTATCAATGATGGAATATGTGACTGTTGTGATGGATCTGATGAGTGGAAGAAATTTACAGTCAGAGAAGATGTGTTACAGAAACATAACTTTGATATGAAATATGTGCCCTGTCAAAACTTCTGTTGATGGTTGTTTTACCACACAGTAGATATTTGAAAGttcatttaaaagttattttctagGATAACATAGGCTGTAGTTCAACATccaaatgatgataatttaaCTGTTTCTCTCTGTAACAGTTGAAGTGCTGTCTTCACAATGCTGACCTTCAGCTTGACATAGATGAGCTTACAGACAGAAAATTGATCacacctttaaaaaaaatctgcgatagcaaacaaatttcatgTTAAAGAATACTTCTAGAAGAGAAAACTATGCTTAGTGCAATCTCTAGAGAAACTGGCTGACAAAAGTCAATATGCTTAAAAATAACTAGAGTTAAATACAAGAGGACTGCATAACTGGGTATGGTAAGAATTGTGCAAAAGTGAAGGGGTAACTGACAAGAAACAACCacaaactgaaacaagaaCACTAACAAGGAGTTatgagaaaaggaaagaaaatactgagaagCACAAAATTCTGTTTACAATTAGAAAGCACTTAGATCTTACACCCCCCTTCATGAGTGGTCATTGTAATGGAACTAGGCAAGCAAATGTCATCCTTTCAAAATATCACATAACCATAAAATTTGTCAACCATTTAAACCCAACCttcagtatgcaaattcttaATACTATTTGacaaacatttccttaggtCATGTCTAGGAGGATTTGGTCCGTCTAACAGTCAATAGTATTTCTATAAGGTGGTTATTTTCCTCTATTATTGTGACTTTATTCGTGATTCATGggtgatatagtaaggagTTATTGGTTGCAAATCACTTTTAGAGGTCCAAAAGTTTAGGAAGCATAAAATGCACTAGGCATCCCGACCAGACTCTGAAAAACAGTATTATTTGAACCTAAACATTCAGTTCACTGGATGATGCCAAATTTTCAGTTCACTGGGAGTACTAGGGGCATTCACAAGCTagactttatttatttgtactAGGgttgtaaatttgtaattgCTTGTTCAGCAGATCTCtaaatgcaatgaaaattcATGACCCGTGAAAATTCTAGGGTTATCATAATGACGCTGCTAGTGTTAAAATATTCATGCCCCCAGCACGACTCTGAACATCTTTTGCCAAGCATTATGTTCCAAGTGGATTGAACATCTGTTATGGTAACATGTCTTCAGTTTAAGCGAGCTGAATGCTTCTGTACAACATGTTTTTGGAGAGAGTACACTTAATAAAAAGTATTATTAAgtaaagatgaatttttaagtaCTCTTTCACAGACACATTTCATGTCTGAACCCTGAGGGACCATCAGGAAACCATAAGGATTCTTATCTAACAAATGCACCTGTCACTGAGTGTCTGCAAAATCCTATAACATTCAGTGCTATAACTTAAcatcaaaaatgaatttatcaCCACAAAATGGATACCGAACCTTTATCAGGAACTGTGACTCTGTTCACTccaacagtttaaaaaatacaaagaaaaatgacaagaaaattattttttacttccCTCTGATTCTTTCTTGTGGCTTTTTAAGTTCAAGTTGTGTTAAATTCATCAAGAAGAAGGTACAGATCAAACCAAACATTGCCCtcacaaaacaagttttat

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12999 all species →	PRKCSH-like	Glucosidase II beta subunit-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028146 all species →	Domain	Glucosidase II beta subunit, N-terminal	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR039794 all species →	Family	Glucosidase II beta subunit-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12630 all species →	N-LINKED OLIGOSACCHARIDE PROCESSING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006491 all species →	Biological Process	N-glycan processing	Interproscan
GO:0017177 all species →	Cellular Component	glucosidase II complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX54794.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.