Gene detail

Detailed information of RMX54863.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1180:246893...263156
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00011167

ATGAACCGCACTTTGCTTGTTGAAGAAGGAGATGATGAAGTTGCCAATAGACAAGATAAGAAAAAGAGAGAAAAAGAAAAGTTTGTAGAATCAGCAGACAAAAAGAAAAAAATGACTTTTAAGAAAGCAGATGGTAAGAAAGATGTACACCATAACAGTTCAATAACAGGCTCATCTAAAGTACAGCCAGCTGAAATGGTTGATATGGCTGCAGTGAATCCTGATCCCGATGGTATAACATCGCCAGTGGGATCCCCAGCAGTTACTGTTCCAGGAACAGGTGTTTATCCAGGAAACATTGTAATTCCACCACCACCCAGATCTACAGCAATCCAACAAGTTCCCTCACAACACTTGCAGCAGAGAGGAAACTGGCCACAGCAGTCACAACAGCAAATGCCTGCTGTCTATATGGTACCTGCACAGCAAGCTCACTTTATCACAACACCCTTCCAGTCCCCAGGACCCCCACCTCAGCAAATATCAGGACAATTTGTTACACAATCATACCAGCAAGGTCATTATGCTGGGGCACAATATCACCAGACTATCCCTGTTGGACCTCCTGTTCAAGGTGTTGTGTACAGTGGTCAAGTAATTGCAGGATCTCACCATGGCAATGTGCTTGCAAGAACTCAGTCCCTACCTGTTTCTACAGGTGAACAGATACAGAGTTCAGGGCAGCCTGGTTGGGCAGTGAAACCCCCAGCAAGGACATGGATGCAAGACAAAAATAATGCAAATACAACGAACAATACACAGTGGGCAGCATTCCCTCCAAGTGCTTCTCTTCAACAAATACCTGTCGTTAATGAACTGGATGAAGAACACAGCTCCAGTGATGAAGATGTTGATCGCAGCAGTTCTCCTGAGCTTGCGGGTGAAGAGGGTGAAGTTCTCCTTAGAGCTCCATCACTGGCGAGTTTTGCAGAAAGTGTCAGCAGCATTGAAGAGGAATCAGAAGATAATGTGTGGTGCATTTTGCCTGATCAAAGAGAATATTACACAAAACAGTTTCTAAGACTGCAACCAGCTATAGATGGTGTTGTGAAAGGACCAAGAGCAAGGGATTTTTTCATGAAATCTGGCTTACCAGTTGAGGTGCTATCCAAAATATGGCACTTGTCAGACCTCAATAAGGACAATGCTTTGAATTTGGATGAGTTCTGCATAGCAATGCATCTTGTTGTAGCTATGCGACATGGCCTGGAACTGCCATTGACCTTACCTACTGTCTTGTTACCAGAAAAGAGTGAAGTGGATATGTGTCCAATTGATGTGCCACCTCAAACAGATGAAGGTGAAGAACCAGAGAGTATAAGAAGGAATGTTTCCTCACCAGAGCACTGGTTACGTTTTAGTGGTTCCTCTGGAAGCACTGCACAGCACACTAAGTTTAACAACTTGCCTATGAGGAGGAAAGCACTGTCAGTTGTACAAGCCTCACCATCACACGGTGCCCTCAAGGAAAGTGAGGACAGTGCTGGAAGACCCAGGTCACTGTCAGATCCAGCTTCTGTTGAGGATGCTTCAACAGATGGCCAATCAAGCAAAATAATCAACCTTGGTAATCCTGTGAGCCCTCTTCAAGTCAACATGCCAAGTACGCCTGCTCAGCAAGGTGATGTGCCACACACTGGACCTCTTAGTCCCACCCACGTTACAGCAGAGATAGAGATAGCACGACCAAGAGCAGCAGTCAAACCTAGCCTTCTTGATGCCCTTCCAGGGCAGCTGCTCCCCCCTCCATCTGGAAAACAAGCCCGTGATGGCTGGACACCCACTAATAAATTTATTTATCAGGCATCACCTCGTCAAAAAGATTCTAGCTCCCCTGAACCTTCCGAATCACCTCCCTCTTCACCTGAAGAAGACACTCCTACTTCACCACTTTCCCCTGAGGGAATGAGGACACCTTCACCTCCTCCTCTGGCACAGGAGGAACAGGAAGAGGAAGAACCTAAGGAGGAAGCCGGAAAGGAAGAAGTAGTCTATCGAGTGAATAGGAGAAGCGGTGAGAGGCCGAGGTCGACTGGAGATGTGAAACTTAATACTAAAAGTGATTCTGGTTTAGTGACAACACCAGTCGAAGAAGAGGGTCAGAGTTCTGTGTCTTCAGAAGGAAAGAAAGATCCACCTCCCCCACCCCCTAGGAACAAGAAAGGTCATTCAAGATCTTCTTCGTTGGATCTCAATAAGCTCTTTGCTACGAAAGCCAAGGAAAATAGAGGAACACCACCATCACCGTCGTCAAGCTTTTCCAGTCAGACGAGTGACAGTGCAGCGCCAGCAAAGAGCGAACCTAACACACCCAGACACAGAAAAGAGAATAGTGCCGAACAAGAGAAAGTTGTAGCCGACCAGGAAAAAGTAGAGAAACAGGAAGATTTTGCTGACTTCAGCAGATTTGAAAGTTTTGTGGAAGCACAGGAAGGCGAAGGCACACGTGGTTCATCCACTCGCCCCGGGATTCATAGGCGATCATTTTCACTCGACCACTCACATGAGTTAGGGTGGTCTCGGTCAACTCCTGCTCAGAAGGCTTCAAATGAAGGAGTCACGACAGCAGCAAGCAGACCAACTCACGCCCAGGAGGCCTTACCACGGCCAGTTCCGAAGTTGAAACCTCCAAGTCCTCCAACATTAAAACAAGGACGAAGAGTAGACAAAGATGGAGAAAAAGAGAGAAAACTTAAAACGGAACCGCCAAAAGTTGTAGTAAGGCCACTAACCAAGGAAGACAAATTAAATTCGAGAATAAATGATTTGAAAGAAAAGAATGCTGTGCTATCTAAAGTTAACAGTGAACTTCAAGAGGAATTGAAAACGATACGAACCGGTCATGTTGTGCCCGTGGACACTTTCAACCCAGAAGAGCTTTCAACAGATCAATGGCTTGAGGCAGCTAAGAGTTTCGGTGCCAAATATATCCTTTTTTCTATCGACCACTTCAGCGGGTTTCTCATGTGGCCTACTGCAACAGACTACAAATACTCCGTTAAATACACAAAGTGGAGAGACGGAAAGGGAAACGTCCTGGCTGACTTTATCAAGTCCTGCCGAAAATATGGTTTGGAATATGGATACTTTTATAGTGTGCATAATAATTGGTACATGGGAGTGGATAATTACACCACTGGTGTTCCTGCAACACAAGAGTACTATAAAAAGGTTGTAGAAGAACAAATGCGTGAATTGTTTAATGCTACCTCTCCATATAAAGACCCTTTTTACATTTGGTTTGATGCTGGTATTGTCCCAAAAGTGAGTCCTGATATCGGGCCAATCATACGTAAGTTAGCCAGTAACTCAATCTGTGACGAATGTCCCACGTTTTCTGGTAATCAAGGATTACACTGGGTTGGTAACGAAAAGGCGTTTGCACCTTTACCGCAGTGGTACGCCGTACCCAAAGGAAAATGCTCTAAGAAGACACCAGATGGTAAAATAATTCAAGGAAGCCCGTATGGTCAGCTGTTCTGTCCCGCAAACTGCGATACCGTTATTCGTGAACACTTTTGGTTCTGGCAACCTGACACGGAGTACTCAGTGAAAAGTGTCCGCAGACTTTTGAGTGAATATCTAACAAGCGTGGGTCATGGATGTACATTGATTCTGAACCTCAATCCCGATACCCGCGGGCTGGTACCCGAGGAGGATCGTAAGGCATACGAGAAACTGGGAAAGGCGATTGCACTGTTATACAAAGATCCTGTTAAAAAATCATTCAAGCCTAGATTAAAAATTGGAAAGAAGAAAATTTGGAAGTTTACAGCATTTAGAAGTCTCAATGGTTCTGTTATCCTGATGGAAGATATTGAGAGATATGGTCAATTAGTCATGAAATATGAACTAAAGCTGAAAACTAAAGACGGTTGGATTTCGACTCCAGAGTTGGGAAGCACCATAGGACATAAAAGAATTCATCCTTTTCCAAAAGACTTGGCAAATAAAACTGTCTCTGCAGTTAGCCTAAGGATCAATAAACTTGTCACAAAGAGAAGATCTATAGTATTAAGAGAAGTTTCTGTTTACAATTGGAATGAAGCAGCGAAGCCCGTCACTGCACATATTTCGGCATCTTCGGCTTTTTTGGGATATTTTTGTTACGAAATGAGTCGATTGGAACCCAGAAAGCATAGTCCAGCTAAAGTTTTTGCTGAGTTTACTTCAATGAGCGAAAATGAGGGTGTAAATCCGGAAAAAATGGACTCGAAACTCGAAGGAGCGTTTGACAATAGACGAGAAATTCAGATATTCGAGACTGGAGAAGTTACTCTTCCTCCTGATAAAGCTAAGGTTTCGATTGTCTGTTCCAATACCAAGGAATCTGTGGAGGTGGTGAAGACAAGTGTAAATCGCAGAGTCGACTACGTTCTGCAGACTCTGAAATCTCACCATGTCAAAGACTTTATCGTTCACAAAATTTTAAACAGAATCAATAACCTATATCAAATGGAAATTGAAGTAGTTGTAGAATTCAGTGATTTCTCCAAGTGTGAAGAAGTGTGTAACCTGCTTGTGGAAAAGCTCGATGAAACAGTGAAAGTATCAAGTCCTGTGCTATATCACACAGCTAGCAAGCTTGAATCATTAAGACGGCAAGCCTGTGTTTGTGCAGTCAGAAATGCAAAGAGCAAAGCTCTAGAAGTTGTTCAAATGTTCAACCAATCACTTGGACCACCAATCCTGATACGAGAGGAGCATTATGAAGAATTTGTAGGAAACAGTAGAGAGATGTCACTTGAAAACAAGGATATGGAACAACTGACTTTTCAAGAAAAGGTTGCTGTAGCAACAGTTACAGTCACTGTCAAGATCTTTGCAATATTTGAGATAAGAGAAAAAATGAAAGCACGCAAGCAGAAGTGA

Transcript

rna-pdam_00011167

TGACTATGTTCCAATATGGCCGCAGATTTCCACTCCTCAGTTAAGGAAATTGGtgattttgtgaaatatttggtTTATTAAAGCTCCTAATTCAATCACACAAGAGGCCTACGGtaggaaaatgttaattggCTCACAATGATTGACTTTTTGGCCCTTTCGAAGAATTTCCGTCTTTTACTGAAAGCGAAATCCACGACGACTTGCTGAAGAGGATATCGAAGTTGATCGCAAACTGGATGAAAACCTAATTCCTTCGCACATAATTGACTTTTTAAAGATATGAACCGCACTTTGCTTGTTGAAGAAGGAGATGATGAAGTTGCCAATAGACaagataagaaaaagagagaaaaagaaaagtttgtagAATCAGCAGacaaaaagaaaaaaatgacttttaagAAAGCAGATGGTAAGAAAGATGTACACCATAACAGTTCAATAACAGGCTCATCTAAAGTACAGCCAGCTGAAATGGTTGATATGGCTGCAGTGAATCCTGATCCCGATGGTATAACATCGCCAGTGGGATCCCCAGCAGTTACTGTTCCAGGAACAGGTGTTTATCCAGGAAACATTGTAATTCCACCACCACCCAGATCTACAGCAATCCAACAAGTTCCCTCACAACACTTGCAGCAGAGAGGAAACTGGCCACAGCAGTCACAACAGCAAATGCCTGCTGTCTATATGGTACCTGCACAGCAAGCTCACTTTATCACAACACCCTTCCAGTCCCCAGGACCCCCACCTCAGCAAATATCAGGACAATTTGTTACACAATCATACCAGCAAGGTCATTATGCTGGGGCACAATATCACCAGACTATCCCTGTTGGACCTCCTGTTCAAGGTGTTGTGTACAGTGGTCAAGTAATTGCAGGATCTCACCATGGCAATGTGCTTGCAAGAACTCAGTCCCTACCTGTTTCTACAGGTGAACAGATACAGAGTTCAGGGCAGCCTGGTTGGGCAGTGAAACCCCCAGCAAGGACATGGatgcaagacaaaaataatgcaaatacAACGAACAATACACAGTGGGCAGCATTCCCTCCAAGTGCTTCTCTTCAACAAATACCTGTCGTTAATGAACTGGATGAAGAACACAGCTCCAGTGATGAAGATGTTGATCGCAGCAGTTCTCCTGAGCTTGCGGGTGAAGAGGGTGAAGTTCTCCTTAGAGCTCCATCACTGGCGAGTTTTGCAGAAAGTGTCAGCAGCATTGAAGAGGAATCAGAAGATAATGTGTGGTGCATTTTGCCTGATCAAAGAGAATATTACACAAAACAGTTTCTAAGACTGCAACCAGCTATAGATGGTGTTGTGAAAGGACCAAGAGCAAGggattttttcatgaaatctgGCTTACCAGTTGAGGTGCTATCCAAAATATGGCACTTGTCAGACCTCAATAAGGACAATGCTTTGAATTTGGATGAGTTCTGCATAGCAATGCATCTTGTTGTAGCTATGCGACATGGCCTGGAACTGCCATTGACCTTACCTACTGTCTTGTTACCAGAAAAGAGTGAAGTGGATATGTGTCCAATTGATGTGCCACCTCAAACAGATGAAGGTGAAGAACCAGAGAGTATAAGAAGGAATGTTTCCTCACCAGAGCACTGGTTACGTTTTAGTGGTTCCTCTGGAAGCACTGCACAGCACACTAAGTTTAACAACTTGCCTATGAGGAGGAAAGCACTGTCAGTTGTACAAGCCTCACCATCACACGGTGCCCTCAAGGAAAGTGAGGACAGTGCTGGAAGACCCAGGTCACTGTCAGATCCAGCTTCTGTTGAGGATGCTTCAACAGATGGCCAATCAAGCAAAATAATCAACCTTGGTAATCCTGTGAGCCCTCTTCAAGTCAACATGCCAAGTACGCCTGCTCAGCAAGGTGATGTGCCACACACTGGACCTCTTAGTCCCACCCACGTTACAGCAGAGATAGAGATAGCACGACCAAGAGCAGCAGTCAAACCTAGCCTTCTTGATGCCCTTCCAGGGCAGCTGCTCCCCCCTCCATCTGGAAAACAAGCCCGTGATGGCTGGACACCCactaataaatttatttatcaggCATCACCTCGTCAAAAAGATTCTAGCTCCCCTGAACCTTCCGAATCACCTCCCTCTTCACCTGAAGAAGACACTCCTACTTCACCACTTTCCCCTGAGGGAATGAGGACACCTTCACCTCCTCCTCTGGCACAGGAGGAACAGGAAGAGGAAGAACCTAAGGAGGAAGCCGGAAAGGAAGAAGTAGTCTATCGAGTGAATAGGAGAAGCGGTGAGAGGCCGAGGTCGACTGGAGATGTGAAACTTAATACTAAAAGTGATTCTGGTTTAGTGACAACACCAGTCGAAGAAGAGGGTCAGAGTTCTGTGTCTtcagaaggaaagaaagatccacctcccccaccccctaGGAACAAGAAAGGTCATTCAAGATCTTCTTCGTTGGATCTCAATAAGCTCTTTGCTACGAAAGCCAAGGAAAATAGAGGAACACCACCATCACCGTCGTCAAGCTTTTCCAGTCAGACGAGTGACAGTGCAGCGCCAGCAAAGAGCGAACCTAACACACCCAGACACAGAAAAGAGAATAGTGCCGAACAAGAGAAAGTTGTAGCCGACCAGGAAAAAGTAGAGAAACAGGAAGATTTTGCTGACTTCAGCagatttgaaagttttgtggAAGCACAGGAAGGCGAAGGCACACGTGGTTCATCCACTCGCCCCGGGATTCATAGGCGATCATTTTCACTCGACCACTCACATGAGTTAGGGTGGTCTCGGTCAACTCCTGCTCAGAAGGCTTCAAATGAAGGAGTCACGACAGCAGCAAGCAGACCAACTCACGCCCAGGAGGCCTTACCACGGCCAGTTCCGAAGTTGAAACCTCCAAGTCCTCCAACATTAAAACAAGGACGAAGAGTAGACAAAGAtggagaaaaagagagaaaacttaaaacgGAACCGCCAAAAGTTGTAGTAAGGCCACTAACCAAGGAAGACAAATTAAATTCGAgaataaatgatttgaaagaaaagaatgctGTGCTATCTAAAGTTAACAGTGAACTTCAAGAGGAATTGAAAACGATACGAACCGGTCATGTTGTGCCCGTGGACACTTTCAACCCAGAAGAGCTTTCAACAGATCAATGGCTTGAGGCAGCTAAGAGTTTCGGTGCCAAATATATCCTTTTTTCTATCGACCACTTCAGCGGGTTTCTCATGTGGCCTACTGCAACAGACTACAAATACTCCGTTAAATACACAAAGTGGAGAGACGGAAAGGGAAACGTCCTGGCTGACTTTATCAAGTCCTGCCGAAAATATGGTTTGGAATATGGATACTTTTATAGTGTGCATAATAATTGGTACATGGGAGTGGATAATTACACCACTGGTGTTCCTGCAACACAAGAGTACTATAAAAAGGTTGTAGAAGAACAAATGCGTGAATTGTTTAATGCTACCTCTCCATATAAAGACCCTTTTTACATTTGGTTTGATGCTGGTATTGTCCCAAAAGTGAGTCCTGATATCGGGCCAATCATACGTAAGTTAGCCAGTAACTCAATCTGTGACGAATGTCCCACGTTTTCTGGTAATCAAGGATTACACTGGGTTGGTAACGAAAAGGCGTTTGCACCTTTACCGCAGTGGTACGCCGTACCCAAAGGAAAATGCTCTAAGAAGACACCAGATGgtaaaataattcaaggAAGCCCGTATGGTCAGCTGTTCTGTCCCGCAAACTGCGATACCGTTATTCGTGAACACTTTTGGTTCTGGCAACCTGACACGGAGTACTCAGTGAAAAGTGTCCGCAGACTTTTGAGTGAATATCTAACAAGCGTGGGTCATGGATGTACATTGATTCTGAACCTCAATCCCGATACCCGCGGGCTGGTACCCGAGGAGGATCGTAAGGCATACGAGAAACTGGGAAAGGCGATTGCACTGTTATACAAAGATCCtgttaaaaaatcattcaagcctagattaaaaattggaaagaagaaaatttggaaGTTTACAGCATTTAGAAGTCTCAATGGTTCTGTTATCCTGATGGAAGATATTGAGAGATATGGTCAATTAGTCATGAAATATGAACTAAAGCTGAAAACTAAAGACGGTTGGATTTCGACTCCAGAGTTGGGAAGCACCATAGGACATAAAAGAATTCATCCTTTTCCAAAAGACTTGGCAAATAAAACTGTCTCTGCAGTTAGCCTAAGGATCAATAAACTTGTCACAAAGAGAAGATCTATAGTATTAAGAGAAGTTTCTGTTTACAATTGGAATGAAGCAGCGAAGCCCgTCACTGCACATATTTCGGCATCTTCGGCTTTTTTGGGATATTTTTGTTACGAAATGAGTCGATTGGAACCCAGAAAGCATAGTCCAGCTAAAGTTTTTGCTGAGTTTACTTCAATGAGCGAAAATGAGGGTGTAAATCCGGAAAAAATGGACTCGAAACTCGAAGGAGCGTTTGACAATAGACGAGAAATTCAGATATTCGAGACTGGAGAAGTTACTCTTCCTCCTGATAAAGCTAAGGTTTCGATTGTCTGTTCCAATACCAAGGAATCTGTGGAGGTGGTGAAGACAAGTGTAAATCGCAGAGTCGACTACGTTCTGCAGACTCTGAAATCTCACCATGTCAAAGACTTTATCgttcacaaaattttaaacagaatCAATAACCTATATCAAATGGAAATTGAAGTAGTTGTAGAATTCAGTGATTTCTCCAAGTGTGAAGAAGTGTGTAACCTGCTTGTGGAAAAGCTCGATGAAACAGTGAAAGTATCAAGTCCTGTGCTATATCACACAGCTAGCAAGCTTGAATCATTAAGACGGCAAGCCTGTGTTTGTGCAGTCAGAAATGCAAAGAGCAAAGCTCTAGAAGTTGTTCAAATGTTCAACCAATCACTTGGACCACCAATCCTGATACGAGAGGAGCATTATGAAGAATTTGTAGGAAACAGTAGAGAGATGTCACTTGAAAACAAGGATATGGAACAACtgacttttcaagaaaaggtTGCTGTAGCAACAGTTACAGTCACTGTCAAGATCTTTGCAATATTTgagataagagaaaaaatgaaagcacgCAAGCAGAAGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan
PF01120 all species →	Alpha_L_fucos	Alpha-L-fucosidase	Domain	Interproscan
PF04402 all species →	SIMPL	Protein of unknown function (DUF541)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000261 all species →	Domain	EH domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR030312 all species →	Family	Interleukin-1 receptor-associated kinase 1-binding protein 1	Interproscan
IPR000933 all species →	Family	Glycoside hydrolase, family 29	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR007497 all species →	Family	Interleukin-1 receptor-associated kinase 1-binding protein 1/DUF541	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18842 all species →	INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0007249 all species →	Biological Process	canonical NF-kappaB signal transduction	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0004560 all species →	Molecular Function	alpha-L-fucosidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX54863.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.