Gene detail

Detailed information of RMX54964.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1152:270237...283537
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00012714

ATGTCTTCAGATGCAGCATCCCTTCATGCTTTGGAAGTGCTTATGAATGAATTTTTTGATTCTTCTACAGACAACAATCGCAAAAGAGAAATAGAACAAGTTTTACAAAACTTTAGCCAACAATCAGGAGCATGGCACCACTGTGTGTATTTTATGAACAACTGTTCAAATCAGTATGTTCTTATGTATGCAGTTTCAGTGTTTGAGAATCTCATTAATAAACAATGGATAGGAACACAAGCTGGAGATAAGGCTGAGGTCCGTCATTTTCTCAATGATTATCTGTTGTCATATCACAAGAAGCTGCCATCATACATCAGAAACAAGCTTATTAAAGTTATTGTCGATATTGGAAGGGTTGACTGGCCACATTTCTACCCAAACTTTTTCTCAAGTATTATAGAGTTACTCCAGCAACCTTCAACAGTAGCATTGGGCTTGCTCATGCTTCAGACAACGTCAGAAGAATTGGCCTCACCCAGGGAGGATTTGAGTATTGCTAGAAAGACTGAAGTACATAGGCTGTTGCTTAATGAAGTTCCCGGCATCCTCTCTTTACTGACTCATTTGTTGGACAGAGTCTTAGAAAAACACCGTCGACTTGCAACAACAGTTACCCCACCTCCTTCCCCCACTCATGGAATATCACCAGCCAGGAGTTCTAGTCCTACAGTTTCAGGATCAAGTTCATTGTCAATATTTACTTCAGCGCCCTCTGCAGATCTGTCACTCCAACATGCAGGGAGTAGTAACCTCATGGGACGATTATTGAATAATTCACCAATGAAATCTAGACAGAATTTAGGACATCCACTGCCACCTTTAGACTCAGAATCTGAAGAGATCAGTTCTCTAGTACTTAAATGTTTAGCACATCTGTTTAGCTGGATCCCTCTGTCGTCCACCATTACACCTTCACTTGTGTCCACTGTGTTTTATCTTGCGGAGTTTGGCTGCAGTGTAGTTCCATCCAGCTCTGGTAGTAGTGTTGTGAGTAATGCAGAACTAGGTGTCTCAGCAATGACTTGTATTAATGAACTGTTGTCTAAGAATTGTGTGCCTGTAGAGTTTGAAGAGTTCTTGCTGAAGTTGTTTCAGCAAACATTTCAGCTGTTGCAGAGAATAACAAAAGATACAGGGGCTCAAGCTGTGGAAAACCTCCTCACAGAACAAGATGAAAGTTACTTGAATAAATTTACAGAGTTCTTGAGACTTTTTGTGAGTATACACTTGAGAAGATTTGAAAACAGCTCCCATTTCCCAGTTCTTGAGCTGTTGATGTTGCTCTTCAAATATACATTCAAACAGCCTCAGCTGGAAGGCTTTTTTGCCTGCTTGGACATTTGGACTGTGTTTCTAGACTATCTTATTGGAAAAGTGGCCAATGCAAGAAGTGATAAGCTTGCAGAAGCAGAGGCTACTGTTAGCAGGTATAAAGAAGTGTTGCTGATGTTGATAACAGAGCTGCTGAAAAAAATTCAATTCCGACATAATCGAAAGCAACTTGAGGAGTTGGACGATGAAACACTAGATGATGATTCTGAAACGGAGTGGCAAGCATTTCAAAGAAATTGCCTGGAAATTGTAGCAAAGTTAGCAGAACTCCTACCTGGAGAGACATTCTCCCTGCTGTTCCCTCTATTTAGTGAATATTGTGATGTGTACATTGGTCTTGGAGAGTTTGTTACCAAAACTGCACATGGCCTTCAGCTTGGGATCAGTGGTGAAAATGAATGTCATCAATTGCACTGTTCACTCAGAGACTTGACCACTATGGAGCGTGCCCTGGGACGACTGTCAGAACATTTTATTGGTGAAGTGAATTTTGCCAACAGATTTAGTGATGGGGAGGCTATTGTTGAAAGACTTGGACAGATTGCGTTATTTGGCACACAAAGTCAGTTGTTTGCAGTTCATACAGCCATGCCTAATATTCTTCAACCTGACCTCATTGAAGTCCACGCCCAAGGACTTGCTGCATTTCAAGCCTACTGCCACTGGATGGCTCAGTATTACTTGGAAACACACAGGCAACAACAGCATCAAGAAAAGTTTGTGACGCTTGTCTCAAATGCAATCGATTCCCTGGTTCCTTTGATGAACAAGGAAGTTCCTCAAAGAGTTTCTTTACCAGCTTCCCACCTTCTCAACTCCTTGGCAACGACTGTACGTCCATCATTTATGACTGCTCTGGATAAAGTACAGAAGCTCTTCCATGATGTTAGCAGTGGTTCATTATCTGACTTGCCACTTGAGGTCCAGACCTTAGTTATACGGTCCTTGTCAAATTCTTTAGTGTTACCTTGGCCAAATAAAGCTGACAATGAACAGGAATGGGAGGTGCGCTCTCAAAGTCATCAAACCTTAATGCATAGCATCAAACAGCCTTTCAAGAGTATTGTGGAAACACCAGGTTTTTCTGGAAACAAACAGCTGCAGGAAAATGCCAAGCCTCTTCTTCACTTCACCTTGCACGTGCTGGCTGATTTGATGTCTGCCGCAACAGAAGACCAGGTTACCAAGACTAAACTCATTCTGTACCAGTCCATCTCAGACGTAGTTCAAATCACAATTAATATTTTTCCGGTCTACATCCACTATCCAGATACAACCGATGAGATCCTGGGCTTCCTGCTGGCGTTGTTCGAGAATTTGAAGGTTCAACTTGGTCCAGCGGTGACAGAACAGATCGTTCAACCACTGCTTCACACCTTCACTCGCCAGCAGTTGTCCGAAATACTACATCATGAGAGTACTGCTGGCTCGCGGGTCATCAACAAGTTCCTGAAGATCCTGCAGCTGTTGGTGCAGGAACCTGCTGCATCTTTCAAGGCTTTCCTCCCTAATATTATCGGGTTATGTATGGAGCAGTTATATCCGATTTTAGCCGAGCAACCGTGCCCCGACATCAAATGTGAATTTTACGAGTTACTCCATCAGTTACTACTGCACAACTGGCGTTACTTCTTTCGTGCATCTCTTTTGGCTTATATGTCAATGGCCGAGGAGACTGTGGAGAACCAGGCCCAGTTTAACTCCGTTATGCAGGCCTTTGGACAGTCTTTTCTTCAACCAGACATCACGGTTTTCAAGCAGAATATTGAAGCTTTAGAAAACCTGAACTCTAAGTGTAAACTTTATCAAAAGCGCATTTTTAAAGACAGTATGCTTCTTCAATTCGTGAACGTCTTCCTCCAAGCGCTGGTGTTTAGATCACATGACCTGTTACAAGAAGAGATCACGATCACCCTGTACAACATGGCGGCTGTGGACTTTGACTCCTTCTACTCAGTGTTCTTACCTCAATTTCTCGGAGGCTGTGAAGGGCTTACCGACTCACAGAAGACTGAACTGGGAAATAATTTCACACCTGATAAGGATCTGCCATCTTTTACTCAGAGTATTCACCGATTTGTCGGCGACTTACGGTACTACAGACTTTGTAACAGCAGCCTGCCTTCAGGAACCGTCAAGTTTTAG

Transcript

rna-pdam_00012714

CGGGCAGGAAGGGAAAGGGGCCTCTCTATCGCAATTGTTCAAGTATGCAACCGGTTTTCTCCCCATTTTAGTCCTGAACCTCGAGGGTGAACAGTGCAAGTTTGAGTCcttacttctttgttttacGGTGAAAATCTGTACTTTTTCTCTGCGAGGCAACGAAACTAAAGGTGTGACGCTCAAAGTTTCGGCCAAGGACTCGACTCTACTACAGAGAAAGCCTGGGAGAATTTTACTTTCGTAGTTACTATGCCGTAGATAGCGGTTCCACGTTGCGTTCATTCCCTGTATTTTCCTGAGAGGGAAGGACTTGTACATGACGCATAATTTGTGATTATCGTAGAAGAGATGTGTTGTGGTCAACTAAATCATTCTGGAAGAGATTGGTGGTAAATGACAGTTGAAACACGAAATTATAGCGACGTGCAGACGTAAacctaaaaatttttgatcatGtctTCAGATGCAGCATCCCTTCATGCTTTGGAAGTGCttatgaatgaattttttgatTCTTCTACAGACAACAATCGCAAAAGAGAAATAGaacaagttttacaaaactttAGCCAACAATCAGGAGCATGGCACCACTGTGTGTATTTTATGAACAACTGTTCAAATCAGTATGTTCTTATGTATGCAGTTTCAGTGTTTGAGAATCTCATTAATAAACAATGGATAGGAACACAAGCTGGAGATAAGGCTGAGGTCCGTCATTTTCTCAATGATTATCTGTTGTCATATCACAAGAAGCTGCCATCATACATCAGAAACAAGCTTATTAAAGTTATTGTCGATATTGGAAGGGTTGACTGGCCACATTTCTACCCAAACTTTTTCTCAAGTATTATAGAGttactcCAGCAACCTTCAACAGTAGCATTGGGCTTGCTCATGCTTCAGACAACGTCAGAAGAATTGGCCTCACCCAGGGAGGATTTGAGTATTGCTAGAAAGACTGAAGTACATAGGCTGTTGCTTAATGAAGTTCCCGGCATCCTCTCTTTACTGACTCATTTGTTGGACAGAGTCTTAGAAAAACACCGTCGACTTGCAACAACAGTTACCCCACCTCCTTCCCCCACTCATGGAATATCACCAGCCAGGAGTTCTAGTCCTACAGTTTCAGGATCAAGTTCATTGTCAATATTTACTTCAGCGCCCTCTGCAGATCTGTCACTCCAACATGCAGGGAGTAGTAACCTCATGGGACGATTATTGAATAATTCACCAATGAAATCTAGACAGAATTTAGGACATCCACTGCCACCTTTAGACTCAGAATCTGAAGAGATCAGTTCTCTAGTACTTAAATGTTTAGCACATCTGTTTAGCTGGATCCCTCTGTCGTCCACCATTACACCTTCACTTGTGTCCACTGTGTTTTATCTTGCGGAGTTTGGCTGCAGTGTAGTTCCATCCAGCTCTGGTAGTAGTGTTGTGAGTAATGCAGAACTAGGTGTCTCAGCAATGACTTGTATTAATGAACTGTTGTCTAAGAATTGTGTGCCTGTAGAGTTTGAAGAGTTCTTGCTGAAGTTGTTTCAGCAAACATTTCAGCTGTTGCAGAGAATAACAAAAGATACAGGGGCTCAAGCTGTGGAAAACCTCCTCACAGAACAAGATGAAAGttactTGAATAAATTTACAGAGTTCTTGAGACTTTTTGTGAGTATACACTTGAGAAGATTTGAAAACAGCTCCCATTTCCCAGTTCTTGAGCTGTTGATGTTGCTCTTCAAATATACATTCAAACAGCCTCAGCTGGAAGGCTTTTTTGCCTGCTTGGACATTTGGACTGTGTTTCTAGACTATCTTATTGGAAAAGTGGCCAATGCAAGAAGTGATAAGCTTGCAGAAGCAGAGGCTACTGTTAGCAGGTATAAAGAAGTGTTGCTGATGTTGATAACAGAgctgctgaaaaaaattcaattccgACATAATCGAAAGCAACTTGAGGAGTTGGACGATGAAACACTAGATGATGATTCTGAAACGGAGTGGCAagcatttcaaagaaattgccTGGAAATTGTAGCAAAGTTAGCAGAACTCCTACCTGGAGAGACATTCTCCCTGCTGttccCTCTATTTAGTGAATATTGTGATGTGTACATTGGTCTTGGAGAGTTTGTTACCAAAACTGCACATGGCCTTCAGCTTGGGATCAGTGGTGAAAATGAATGTCATCAATTGCACTGTTCACTCAGAGACTTGACCACTATGGAGCGTGCCCTGGGACGACTGTCAGAACATTTTATTGGTGAAGTGAATTTTGCCAACAGATTTAGTGATGGGGAGGCTATTGTTGAAAGACTTGGACAGATTGCGTTATTTGGCACACAAAGTCAGTTGTTTGCAGTTCATACAGCCATGCCTAATATTCTTCAACCTGACCTCATTGAAGTCCACGCCCAAGGACTTGCTGCATTTCAAGCCTACTGCCACTGGATGGCTCAGTATTACTTGGAAACACACAGGCAACAACAGCATCAAGAAAAGTTTGTGACGCTTGTCTCAAATGCAATCGATTCCCTGGTTCCTTTGATGAACAAGGAAGTTCCTCAAAGAGTTTCTTTACCAGCTTCCCACCTTCTCAACTCCTTGGCAACGACTGTACGTCCATCATTTATGACTGCTCTGGATAAAGTACAGAAGCTCTTCCATGATGTTAGCAGTGGTTCATTATCTGACTTGCCACTTGAGGTCCAGACCTTAGTTATACGGTCCTTGTCAAATTCTTTAGTGTTACCTTGGCCAAATAAAGCTGACAATGAACAGGAATGGGAGGTGCGCTCTCAAAGTCATCAAACCTTAATGCATAGCATCAAACAGCCTTTCAAGAGTATTGTGGAAACACCAGGTTTTTCTGGAAACAAACAGCTGCAGGAAAATGCCAAGCCTCTTCTTCACTTCACCTTGCACGTGCTGGCTGATTTGATGTCTGCCGCAACAGAAGACCAGGTTACCAAGACTAAACTCATTCTGTACCAGTCCATCTCAGACGTAGTTCAAATcacaattaatatttttccgGTCTACATCCACTATCCAGATACAACCGATGAGATCCTGGGCTTCCTGCTGGCGTTGTTCGAGAATTTGAAGGTTCAACTTGGTCCAGCGGTGACAGAACAGATCGTTCAACCACTGCTTCACACCTTCACTCGCCAGCAGTTGTCCGAAATACTACATCATGAGAGTACTGCTGGCTCGCGGGTCATCAACAAGTTCCTGAAGATCCTGCAGCTGTTGGTGCAGGAACCTGCTGCATCTTTCAAGGCTTTCCTCCCTAATATTATCGGGTTATGTATGGAGCAGTTATATCCGATTTTAGCCGAgcAACCGTGCCCCGACATCAAATGTGAATTTTACGAGTTACTCCATCAGTTACTACTGCACAACTGGCGTTACTTCTTTCGTGCATCTCTTTTGGCTTATATGTCAATGGCCGAGGAGACTGTGGAGAACCAGGCCCAGTTTAACTCCGTTATGCAGGCCTTTGGACAGTCTTTTCTTCAACCAGACATCACGGTTTTCAAGCAGAATATTGAAGCTTTAGAAAACCTGAACTCTAAGTGTAAACTTTATCAAAAGCGCATTTTTAAAGACAGTATGCTTCTTCAATTCGTGAACGTCTTCCTCCAAGCGCTGGTGTTTAGATCACATGACCTGTTACAAGAAGAGATCACGATCACCCTGTACAACATGGCGGCTGTGGACTTTGACTCCTTCTACTCAGTGTTCTTACCTCAATTTCTCGGAGGCTGTGAAGGGCTTACCGACTCACAGAAGACTGAACTGGGAAATAATTTCACACCTGATAAGGATCTGCCATCTTTTACTCAGAGTATTCACCGATTTGTCGGCGACTTACGGTACTACAGACTTTGTAACAGCAGCCTGCCTTCAGGAACCGTCAAGTTTTAGAACAAatttatttaggaaaaaaaaagggaaaaaaaaaggaaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040016 all species →	Family	Exportin-6	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21452 all species →	EXPORTIN-6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25204	XPO6, RANBP20; exportin-6	-	Nucleocytoplasmic transport	ko03013	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.