Gene detail

Detailed information of RMX55023.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1137:219774...229717
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00007258

GGCATTGCCTAGTGGCACGACATGGCGGCTGCTTCGATCTTCAAAGATGTTCCTGGAGTTCCTACAGATCATGTTTTCTGTGTCAATCAGATGTACAAAGATGACCAGAATCCCAATAAAGTCAACATGGGAATTGGAGCTTATCGCGACAAAGATGGAAATCCAATGGTACTACCAGTGGTTTTGAATGTTGAGAAGCGACTCGCTGAGGAAATCGCATCGAAAATTCTAAATCATGAGTACTTATCAATCGATGGTCTAAAGTCCTTTTGTGATGCGGCTAGCAGACTGCTTTTGGGAAATGACAGCCCTGCGCTGGCAGAGAATAGGGTTTGTTCAGCTCAGGCGATCTCTGGCACAGGAAGTCTTCGTCTCGGGATGGAGTTCTTGAAGAAATTCTACCATTCAGAAGTTATCTATGTCTCCAATCCTACATGGGGAAACCACAAGAAGATGCTCTTAGCCACTGGTTACAAGGCTGAAAACATCAAGGATTATCGTTACTTTGATAAAGCAACAAAAGGTTTGGATTTCCAAGGCATGTGGGAAGATTTAGAGAATGCTCCAGATAACTCAATAATCCTGCTTCATGCCTGTGCACACAATCCAACTGGAGTAGATCCCGACCAGGAACAGTGGCAAAGGATTGCTGAGATAATGAAGagaaaaaagctgtttcctttgtttgacATAGCTTACCAAGGATTTGTGTCTGGTGACCCTGATGAGGATGCTTGGGCTGTACGCTACTTTGTTAGTCAAGGATTTGAAATGGTCATAGGACAATCATTTGCCAAGAACTTTGGATTATACAATGAGAGGGCAGGTCATACATGTGTGGTGACAACAGATAATGAAACAGCTGAACGTATCCGTAGCCAGCTCAAAGCAATCATCCGCCCAATGTGGTCAAATCCACCCAATCATGGTGCACGTATTGTAGCAACCATACTGAACAACCCAGCCCACGCTGCCGAATGGCGTGAAACTTTAAGGACGATGGCTGGGCGTATTTTAGAGTGCCGAAAACTCCTTTACAACAAGCTGAAAGAACGTGGAACACCAGGAACGTGGAACCATATTGTGGACCAGAAGGGAATGTTTGGATTTACAGGATTGAATGTAAAACAAGTGGAATTCTTAGCCAAGTCTTACCACATCTACCTGCTGAACAGCGGACGGGTAAACATTTGTGGGATCACTCACCATAACGTCGACTACATCGCTGAGGCGATTCATGAAGCTGTCACCACAGTTACCGACTGATCAAGTCTATAGCTTTTGGTTGctggttatttttgttgttgtgaaaGCTAATCTGTGTGAAACCTGCGTGCGTGCTGACACATCATTCACGCCAGTGTGAAATCGCCCAAGAGGTACTCGTGTGAATGGATAAAGCTGACAGTCATCTCATAATTTAACGATTTGTATTTACAAGGGACAACGTTTGTCAATCAGACAAACTGAAATGCGGTGTGATCACTTATATTTTAATCGTCCGGTCAATTGTGGctgattttatttacaaaggaGGGTCtcatttgtattaaaatttcCCTACTGgatgaaatatcaataaacCTTTCACCTTCAATACAAAGTTGTTATAGCCATTGTCAGGGCGGAGCCTGTAGGCCGTTCAGTGATTTGATGCAGGATAAGTGTTGTGATAAGTTTTGACTCCAAAAAACCCACTTATTATAAGAGTGCAAAAAGGACAGGGTGAATGACATGCGGAGGGAACGTGCGTTACCTCCATGAGAGCTCTTCTTGTGCAAATACAAATGTTTGGAGAAAtagtaaattttccaatttgttcAGGCAATTTCTTACGCGAAACTTCGTTAATTACCATGACTCTTGCTCGCTCAATTTTAATCTTACCAGCTCATGAGCATAAATGTTACCTATTAGTTCAATAGAAATAATATTCAGTAATTATCTTATATTCACTTCGTGTTTGCCACAATAAAAACATATCGCGTTTAACTGAAAAATGCTCATGAAATAACATTGCCGTGGGCACATTGTTCTCATCATAAGAATCTTTTTACGCCCTGAAATATGTGGTCGtcatgttgaaataaaaagacgTACACATCAGTAGATTTGTAGGTTCCTCGTGAATCCTTTCGTAGTGCTTTGTTCCCTGTCAACAACATCTCTGCACACAGTTTCGGGCACTCTCAGTCTCTTGTTGGCGAGACATGCCTTTAAGTTAGctcatgaataaaaaaagtcCAACGTAGCCAGCTAGACAATCAAATTGTTGAAACCGGCATTTTACCCTCATCATATAAACAAATTCCCAAATTTCATAATGTAATAGTTGTAATTACCATAGTTGGCCTGGATTGGTTGTGAGCGCTCCAATCAAGCATGTTAAACATACCcgaacaaagagaaaatcacAGAAATCACAATGAAAACCTTGGTTGATGTTAGCAAGGCAGTAGCGTTACATAAATCGTAGTCGCAGCAAGTGATATCACAGTTTTCGGCTTGGCCAATGTACTTGCAAGCCACTGTGTTACAAAAATCTGCTACAAAACATCCTCGCTCATAAACATCAAACCTTTTTCCACGGATGTCGAATGTTGACCTTGTCTTGGCGCAAACATCTAACCATGGCTCACAAACGTATTTTGTTCGACTTGCATCACATTGAGTCCAGTTCGAGGAAGAATAACATGTATAACACGTCAAAGATAAacCAACTTGTACTGTCgccgaaaagaaaacatatttaacCAGGTCATGCATGTTAACTTGTGAGTagaaatttcttcttctttctttcacgGTGAATATTGAAACCGTTTTGACAACGCCTAACACTGCGAGGTCTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR000796 all species →	Family	Aspartate/other aminotransferase	Interproscan
IPR004838 all species →	Binding_site	Aminotransferases, class-I, pyridoxal-phosphate-binding site	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11879 all species →	ASPARTATE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004069 all species →	Molecular Function	L-aspartate:2-oxoglutarate aminotransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006532 all species →	Biological Process	aspartate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14454	GOT1; aspartate aminotransferase, cytoplasmic	EC:2.6.1.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.