Gene detail

Detailed information of RMX55037.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1137:16710...20802
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00007238

CCATCATGGCGGCCAAGTTTGAATAATCTTGGACAATTTAAATACCAAGATCAAGCCAACGAAAGCCTTTGAAAATGGATCGAAGAGACCAGTACAAAACTTTAGGTGTTAGTGTGGAGTCTCAGAGAAGTAAACGACGTGACCAGGAGGCAGAAATTCGGAAAGAGAAACGCGAGAAGTTGTTGAGTGCAAAACGAGTTCGTTTCTCTGAAGTTGAAAGTGATTGCGAAGTTGAAGACTTTACGACAGAACAAGTTCAAGAATTAGCCAGGGTGATACAAAAATCAAACGAGAGCAATCTGAAAAACCTAAAAAGTCTAAGGAAAGCGTTTGCACAAGGAAGTGAATTAATAAGCGTTTTTCTTGGAGTCGAAAACAGTGTGAGGGCTTTAGTCGGACACTTGACCGGGAACAACTCACAGTTACAGCATGAAGCTGCTTGGTGCATCACGAACTTGGCAACAGGCGCTCATGAAGATACTATGAAAGTACTAAAAGCATCCGCTGCTTATCTTATCACATATCTTAGCGGACAAAATGTTCAACTGCAAGATCAGTGTGCCTGGGCTTTGGGAAATTTTTCTGGCGATTCTCAGGAATGTAGGGACATTCTGCGAGCGCAGGGGATCATTGTACCAATGGTTAATCTCTTAAAGTCACCAATATCCACTGTAGTGCAGTCAGCAGCATTTGCTCTATCCAACCTAGCCAGGGGAGAACAGGGTGTCGCTGAAGAACTGTTACAAGCAGGGATAGCACCTCTGATCATTAGCCTCCTTACTCCTGGAAACAGCTCCACTGATGTTGCTTCAGAAGTAGCTTGGGTATTGTCATACTTGACATCCAAACCTATCTGTGTGCCTCTATTAGTATCAGGAGGAGTTACCAATATTCTTGTTGAATCCTTGAGTTTGCTGGCACAGCAAACTGAACTTGATAGCCAAGCTGTGACACCAATGTTACGAAGCTTAGGTAACATTGTTAGTGGACCTGATGAATATGGAATACAAGCAATGCAGAGTGGAAAACTGGTTGGTGCAATGAAATCGTTTCTCCAATCAGTTCACAGGCATATAAAGAAGGAGAGTCTGTGGGTACTGTCCAATTTGACTGCAGGACCAACAGAACACATTGATGTGTTAGTTCAAGGAGGAATATTACCACTTGTTATGGATCTGATGTCATCAACTTATGATATTAAGAAAGAGgcTGCTATTTGCTTGTGCAATGTTGCACATCATGGTCCTGAATACTTGAAGAGTGTTTTAGATGTTGGAGCCATGGAATCATTCATCAACATTATGAAATCTCCAGACCAAGACACTGTTATTACTGGTCTTCAGTTTGTTGAGATGTCTCTGAGAAATTTCCCTGCATCTAAAGACTTGTTTGAAGCTGGTGAGGGCGTTGCTTGTTTAGAAGCTTTGGAATACAACTGTAATGAAACAATTTGTCAGTACGCAAATGAGCTTCTTGATACTTATTTCATGGAGGAAGGGCCTGAGGAGGGGGACTTTGGTGGGGAAGCAGAGAATAGCGAAAATGATGTGTTGTCATGGAGATGCCAAGACAGTGAGATGACATCATAGTGTGATCTACACTTTTCGGATAAGTTTTTAATGCACATTTCTTGGAGAAGGTTACTTTTCACCAAAGAGATATTCAGACATGAAgcccaaaaagaaaaattgggcTCTCTGATTATCAAAGGTAGCAGAGGTTGAGTACAATTGcagttcaatttttgttaactctttaacaaGTTACCaagactaaatttttttctaacaatataaaaacaaaatcaagcagacaagtgatgagaatgaagaataCTACAATCAAAGAGGATTCTTTGCTGATCCAATATCAATTTATCCAAACTAATTCCACAAGAATTgcatgagaataaacaaaaatgccaTCAGTTTAACCTGTAAACAGGCTTTAGCATTTGCGTTTTGCTCACAGCTCCTATTCTGAACACAGCCACCAATTACATCATCAGCAGCCACTTATGGAGAACATTATGGAAAccccttttttgtttaacatatatatattcataATGGAGATGCTGTTTCATCTTGAGAGAAATTACAccactgttttccttttcacatTGAAGAATATACAGtattagtatataccacacaggtgaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR002652 all species →	Domain	Importin-alpha, importin-beta-binding domain	Interproscan
IPR024931 all species →	Family	Importin subunit alpha	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16356 all species →	TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX55037.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.