Genomic Location: SczhEnG_1129:147467...151478
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families
| CDS |
| pdam_00018424 |
| Transcript |
| rna-pdam_00018424 |
| Protein |
| RMX55088.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002140 (this species only) · gene tree & orthology |
RMX55088.1 in Pocillopora damicornis.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR011029 all species → | Homologous_superfamily | Death-like domain superfamily | Interproscan |
| IPR001368 all species → | Domain | TNFR/NGFR cysteine-rich region | Interproscan |
| IPR052135 all species → | Family | Tumor Necrosis Factor Receptor Superfamily Member 5 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46875 all species → | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0002768 all species → | Biological Process | immune response-regulating cell surface receptor signaling pathway | Interproscan |
| GO:0003823 all species → | Molecular Function | antigen binding | Interproscan |
| GO:0009897 all species → | Cellular Component | external side of plasma membrane | Interproscan |
| GO:0023035 all species → | Biological Process | CD40 signaling pathway | Interproscan |
| GO:0030890 all species → | Biological Process | positive regulation of B cell proliferation | Interproscan |
| GO:0032735 all species → | Biological Process | positive regulation of interleukin-12 production | Interproscan |
| GO:0034341 all species → | Biological Process | response to type II interferon | Interproscan |
| GO:0035631 all species → | Cellular Component | CD40 receptor complex | Interproscan |
| GO:0035666 all species → | Biological Process | TRIF-dependent toll-like receptor signaling pathway | Interproscan |
| GO:0042113 all species → | Biological Process | B cell activation | Interproscan |
| GO:0042531 all species → | Biological Process | positive regulation of tyrosine phosphorylation of STAT protein | Interproscan |
| GO:0042615 all species → | Molecular Function | CD154 receptor binding | Interproscan |
| GO:0042832 all species → | Biological Process | defense response to protozoan | Interproscan |
| GO:0043123 all species → | Biological Process | positive regulation of canonical NF-kappaB signal transduction | Interproscan |
| GO:0043536 all species → | Biological Process | positive regulation of blood vessel endothelial cell migration | Interproscan |
| GO:0045766 all species → | Biological Process | positive regulation of angiogenesis | Interproscan |
| GO:0045944 all species → | Biological Process | positive regulation of transcription by RNA polymerase II | Interproscan |
| GO:0048304 all species → | Biological Process | positive regulation of isotype switching to IgG isotypes | Interproscan |
| GO:0051092 all species → | Biological Process | positive regulation of NF-kappaB transcription factor activity | Interproscan |
| GO:0051607 all species → | Biological Process | defense response to virus | Interproscan |
| GO:0071347 all species → | Biological Process | cellular response to interleukin-1 | Interproscan |
| GO:0071356 all species → | Biological Process | cellular response to tumor necrosis factor | Interproscan |
| GO:2000353 all species → | Biological Process | positive regulation of endothelial cell apoptotic process | Interproscan |
RMX55088.1.Genes whose expression across the transcriptome samples of Pocillopora damicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pocillopora damicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
