Gene detail

Detailed information of RMX55206.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1114:118732...125975
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00014064

AAGGTCACGTGGTCTGATATACTTCTCTCTGGCAGAGGTAGCAGCGTGGACATTTGCCGGAAAATAGTCTTTGCAATCATGCTTTCATCACGACTCACGTCCATTTTAACGAGAAGTTTGGCGAGAAGAACACCTCAGATTTATCATGGATCCCTTGGTGCAGTATCAGTTGCTGTACGAAATATAACATCATCTAGTCCACACTTTGCAAGTAGTGGGACTGCAGAGGTGTCTTCAATCTTGGAACAAAGAATTTTAGGGTCTGCACAGAAGGCTGAACTGGAAGAAACTGGACGCGTTCTGTCCATTGGTGATGGTATTGCTCGTGTTTATGgccttaaaaatattcaggcAGAAGAGATGGTGGAGTTCTCAAGTGGTCTCAAGGAGAACCTGTGCTGTTTCATCCATTTCTACATTGTAATTagattttaaacttaattgCAGGGTATGGCTTTGAACTTGGAACCTGACAATGTTGGTGTGGTGGTATTTGGAAATGACAAGCTTATTAAGGAAGGAGAtgttgtaaagagaacagGGGCTATTGTAGATGTACCTGTTGGGGAAGGGATGTTAGGGAGAGTGGTAGATGCATTGGGTAACCCAATTGATGGCAAGGGAACACTGGCTGACACCACACGAGCTCGTGTAGGAATCAAGGCTCCTGGTATCATTCCTCGTACATCTGTGAATGAACCTATGTTGACTGGTATCAAGGCTGTGGACAGCTTAGTTCCTATTGGACGAGGACAGCGAGAACTTATTATTGGAGACAGACAGACTGGCAAAACTGCCATTGCTATTGATACCATCATCAATCAGAAGAAATTTAATGAAGGAACAGATGAAAAAAAGAAACTCTATTGCATATATGTGGCTATTGGACAGAAGAGAAGTACTGTTGCTCAGCTGGTGAAGAGATTGACAGATGCTGATGCTATGAAATACACCATTGTGGTAAGTGCTACTGCCTCAGATGCTGCCCCTCTACAGTATTTGGCTCCTTACTCTGGTTGTGCTATGGGAGAATACTTCAGAGACAATGGAAAACATGCTTTGATCATATATGATGACTTGTCAAAACAGGCTGTGGCGTATCGTCAGATGTCACTTCTATTGCGTAGACCCCCTGGTCGTGAAGCCTACCCAGGTGATGTGTTCTACCTTCACTCGCGTCTCTTGGAGAGAGCAGCAAAAATGAATGATGACAACAAGGGAGGTTCCCTGACTGCACTTCCAGTTATTGAAACTCAGGCAGGTGATGTGTCAGCATATATTCCAACCAATGTGATTTCCATCACTGATGGTCAGATCTTCTTGGAGACAGAGCTGTTTTACAAAGGTATCCGTCCTGCTATCAATGTTGCTGGATCCATGAAACTTGAGCTTGCACAGTATCGTGAAGTGGCAGCTTTTGCTCAGTTTGGTTCTGATCTGGATGCTGCTACTCAGTCCCTCCTCAACCGAGGTGTCCGTCTCACTGAACTTCTTAAGCAAGGACAGTACGTGCCAATGGAAATCGCAGAGCAAGTGGCCGTGATCTATGCTGGCGTTAGGGGTCATCTTGATAAGGTGGACCCTTCCCGCATCACAGCGTTTGAAGAAGCTTTCCTGAAACACATCCGCACATCACAGAAGGATCTTATCGAGACCATCAGGAAGGAGGGTGTCATCTCAGAAGACACAGATGCTAAGCTCAAGAAGGTCGTCACAGAGTTCATCGCatcttttgaataatttttcttaaaagtgttaatatttttttcaaccgCAGCTTGTGTTAAATGTGTCCTTTTACGAAATCAACTTGCCAGTTGTTTTGGCGGTGctaggaaaataaaaagaaactgaacTGGAGACAAGATACATGCTGCGTCGTGTTAACAGTGCTTTGTTAATAAACTACATTCATAACTGTAGATTCGTACAGCAGAGTGTAGTATCCATCCGAATCGACCTGCGACCAGGATTTCCTGTCTTTTTGCAGATCGACAAGGGCTAACAGCTGAGCCGCCTCTTGCTTTCTCCGGAAAGCCAGACTGGGAATCAACCTAGGATCAAATGGGAACAGCTTAATTCGTTGTGCACTTATAAGTAGACTACAAGCAGCCCCTCCTTCTTAGCTTTTTCCGTTTCGCCAGGCAAAAGCaatctgttaatttttccgTGTAATTTGCGGTAACATGTAGGGGTCCTCTCAGGTAAACCTTTCAGAGCAAGGGCCACCGAATGCCGTTGGCTAAAGCAAATCGTCCATGGGAGTGATCTACTTCTGTTGTTTCTTCGTACAATTAATTCTACATCACAAGGCGCTCCGCTTTCCCAACCACTTAAGAATATCGACTGTGTAAGGTACCACCCTTACACTTGCCCAGCCTCCTCTCCCTTCCCCAACAACCTCAGGACAACCCCGCCAGCAGGACCTAATTATTGGCAATACGGCTCGTATGTTTCTTCGCCCGTGAGGAAGGGTCTGGCACTGGACCCCATATTACCGTCGTGATGTTATGAATAGATgcattcatttaaataaaaaaagttatgcgTAAATAACTTGGCAGTTTGTCCCGCGATGTTGCCTGCCTCTTTGTGAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003945 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02874 all species →	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005294 all species →	Family	ATP synthase, F1 complex, alpha subunit	Interproscan
IPR004100 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR036121 all species →	Homologous_superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Interproscan
IPR023366 all species →	Homologous_superfamily	ATP synthase subunit alpha, N-terminal domain-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48082 all species →	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005754 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase, catalytic core	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0046034 all species →	Biological Process	ATP metabolic process	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX55206.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.