Gene detail

Detailed information of RMX55384.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1067:182129...192653
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-pdam_00010157

ATGATGGCAGGAACGGATGCTCAGCTACCCATTATAAACCTTCATGTAAGCAGATTGTTGAGTACCGTACACGTCTGGAACTCTGCCATTATGTCTGAGCAAGAGAGATCATTTATTGGCAAAGTAGCATTGATAACAGGTGGAAGTTCAGGTATTGGTAAAGGAACAGTTCTTTTGTTGTCCAAACTTGGATGCAGTGTAGCTTTTGGAGGAAGAAACAAAGATGAACTTGACAAAGTGGTGGCcaaatgcaaagaaattagAGCTGATGCCCAGgTTCTGTCAGTGCAAGGCGATCTAGAGAAAGATGAAGATGTGAAAGCTCTTTTTGAAGCGACCATCaaagaatttggaaaattgGATATTCTGGTCAACAATGCTGGGATAGTTATACCTGGGACCATAGAAACGACTTCACTGGAAGACTTTGACAAGGTTATGAGAATCAATATGAGGGCTGTTTTCTACTTGACATCACTGGCAGTGCCTTACCTCATTCAAACACAAGGTTGCATTGTGAATGTTTCCAGTGTGAATGGCATGAGATCGTTTCCTGGAGTGCTTGCCTACAACATGTCTAAAAGTGCTGTTGATCAATTTACAAGATGTGTTGCACTTGAACTTGCATCAAAAAACGTTCGATGCAACTCAGTCAAcCCTGGAGTAATAATCACTGAAATTCATAAACGGGGAGGTATGGATGACGAGGCTTACGCAAAGTTTCTAGAACGTTGCAAACAAACTCACGCCTTGGGAAGACCAGGAAATGTGGATGAAGTATCGAGTGTAATTGCTTTCCTTGCATCCAGTGAATCGTCTTTCATGACAGCGATTCAACAACTGgaaaaatccaaaatggcggcggGAGGGATGTCTTTCGCAGGCAAAGTTGCATTAATAACAGGTGGCAGTTCAGGTATTGGTAAAGCAACAACTTTGCTGTTATCCAAGCTTGGATGCAGTGTGGCATTTGGGGGGAGAAATAAAGCCAACCTTGAAAAAGTAGCAGCTCACTGCCAAGAAGCAAGAAATGATGCTCAGGTTCTTCCAGTGCAAGGTGATTTGGAAACAGATGAAGATGTAAAGACGCTTCTAGGAACCACAATCAAACATTATGGAAAGCTGGATATTTTGGTTAACAATGCTGGAATATCTGGTTTGGGAACTATTGAGAACACTTCCTTGGATTTATTTGATCAGATCATGAGAATCAATGTGAGGTCAGTGTTCTATTTAACTTCTCTAGCAGTTCCATTTCTAACACCAACACAAGGGTGCATTGTTAATGTGTCAAGTGTCAATGGACTGAGGTCGGTAAaACTTGCACCAAAGAAGATCCGCTGTAACTCAGTCAACCCTGGTGTTACGATTACTGAATTGCAGAAACGAGGAGGGCTTAACGAAGAAGCTTACCAAAAGTTTTTAGAACGTTCAAAGGAAACTCATGCCTTGGGGCGTCCTGGAAATGCAGAAGAAGTAGCCAATGTGATCGCTTTTCTGGCTTCAAGTGACGCGTCTTTCATAACCGGTGCTACACTGCCTGTGGATGGAGGAAGACATGCGATGTGCCCACGATAACACATCCTGCGGCTACTCGTTCAAGACATGTGGGTTTGTGGTGGTAGTGGATGCGAATTGAATGCGAAAATGAATGATGAAGGATACTAATATCCGTAATTGAATAATTATATGCTTCATCATGATCATCAAAAAAGACCACTGTTCCAAGTATTTTTCACTTAATGGTGGTCATAGTGCGACTTCGATTACTTGACTTAGATGACAGCATCTTGTTTAAATAGAACAACAAGACGTTTCCACACGTTTGGTTTAAGACAATTGGTGTAATATAATTggttcaagataattttgtgaTCGTTAGGGATGATCGAGATGAGATGATCGAGATGAGATGATTGAGATGAGATGATCGAGATGAAGAATTTCTCGTTTATCATTCATTGTTCTTTTTCGTTCATGACGTTTCAGTCGCTTATCATTTtgtctgtatttcttttcataatatcgtttatttcaaaatccCTGATGTTCCTCTGTTAAACTGGAGGTCAATAAAATAGTTAGAGCCTCAAACAGATGTTTCTTCTctacaaagaaaaaccgaaaaatgGCTAAAACCTAACGTGGATCTGGAAGGAATAGAATACAACTTACCAAATACTTAATAACCCTTCTCGttttaacatcagtatgcttTTTTATCCACTCTGTTCAAAATACAATTCCCAAGCTGGTGACAAGGAGAGTTtattaaacaatcaagagcttctttagtcggcgatcgtttcctttattctcgttaccttaA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43975 all species →	ZGC:101858	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX55384.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.