Gene detail

Detailed information of RMX55393.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1067:13672...28174
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00010138

ATGAGTTCTTTCTCTTCATATTCACCTGGATCTTCTCCCCCACGGAAAGAACAACCTCTTTTCACTCTTAAACAAGTAACGCTCATCTGTGAAAGAATGCTAAAAGAAAGAGAAGCACAAGTTACAGAGGAATACGATAAAGTTTTGAGAGAAAAACTGGCAGAACAATATGATGCATTTGTCAAGTTTAATTATGATCAGGTGCAGAGAAGATTTCAAGAGACTGCACCAACATCGTTGAAGGAGGCCATCGTTAAGATATCCGCTCAGAAACAGTGTCCGAATGAAGGCAGGATTGTTCGATCGGTCCTTCAAGAATTCGATTGGAGTAAAACGGAGATACAGAAGCAGTTAAAGTTCGCGGTTAAAGATGGTTTGATTCTTCAGGTGACTACATTTTCTAGCCATGGGAGTACTAAAGGAATCCCTCAAACTGCTTACAGGATTCTTCGGAAAGATGGCGAAGACGAGGATGAAATAGAGAAGCAAAAGAAAAAATTGAGTTCCAACACTCATGACTGGTATTGCTGGGAATGTCACAAAGCAGGAGAAGTGATTGCATGTGAATACTGTCCTCGTGTGTTTCACAGGAAGTGTGCTCATTCTGGTACAGTTGCAAATGGCAAATGGAAATGCCCATCCTGCCAGCCCCAGAAGCTCTCTGCCTTGATGGCAAACAAGACACCAGACCAGCTTGCTAAGTTGCTGAAATTTACTCTGGAGAGAATGAAAGAAAAGGCCAAGGAATTGATGGAGCCAATTTCTCAAGATGAGCATCCAGATTATGAGGACTTCATATTCAAACCAATGGATCTTAAGAATTTGGAAAAGCTGGTTGAAAAGAAATCATTTAAGTCTCCTAAAGAATTCAGGGAAGAATCTCAATGGATATTTCACAATGCGATCATTTATTTTGGAGACGATGATGATATCACAGATCTTGCAGAAGCCATCATGGAAGACTGCGATGGAGAGCTTGAAGAGATGGTTAGATGCCCAGATTGTTACTTGATGTCAAATTTACGAACTAAAAATTGGTTCTGCAAACCTTGTTATTTCCCCCATGAGCTTGTGTGGGCAAAGATGACAGGGGAACCACCGTGGCCTGCTAAGTTGTTGAGTTGGAATAATGATGAGACGAAAGCTCTGGTGCGATTCTTTGGGGCTGCACATCAAAGGGCCTGGGTTGGCCGGAAACACGTGATGCCAATCACAAGTAAGCCGGAAGTCAAAAAACGATCTCAAAGATGGGTCCAGGCTAATGAAGAGATGAAAGAATATCAGAGGCAGCTGGCTCTGCTGTACCCGGACGCTAATAAAAAGGAAACTCCCCCTCTGCCAAAAACCGAGACCAAGGAATGTCAGACGGATGTAGTCTTGAATGAGGAAGACAAAGAAAAGATAAAACAGTTGGAAGAAAAGGTTCGGCAGCAAGAAGAGGAACTGAAGTCACTCCAGGCGGACTTGAAGTGCGAGCGGGAGCGCGCTAAGCAGCTGGTCGAAGGAGCGAAAAAAAAGAAGGAAGAACAAGACCAACGAGTGTTACGTGACAAGTCTGTGAGTGAACAGAAGGAAACATCCGAGAACTGTGGCAGTAGCGGCCCAACTATTGACCTTTCCATGACTAGGGATCAGTCAAGTGTTATAAAAATGTTACAGGAGGCGCTCGAAAGAGAGAGACAAGATAAGAAAGAACTTATAGACAAAGTCACGCGTGATACTCAAAAGAACAGGGAGCGTGACATACAACAGGCTGTGAAGCGAGCCGTGAATAAGGAGAGACTAGAACGAGAGCGTATCACAGAGGAGGCAGTGAAGAAAGCTGTAGAGAAATGCAAACAGGAAAGAGACAGGCACACTCAAAAAACGCTGCAGATTGCTAAAGACGAGGCTGAAAAATCGGTGCAGGATGCAGTCAGCTTGGCTAAGAAGAAACAATGGTGTGCGAATTGCCATGCCGAGGCTTTTTATCCGTGTTGTTGGAACACAAGCTATTGTACTTTGGAATGTCAAAAGGCTCACTGGTGCTCACATAGGTTCCATTGTTTGAGGGTTACTTGTAGCTGCAATCGAGATAGCCCGATGACGCAATCGTGA

Transcript

rna-pdam_00010138

CTACGAttcaaaacaaccaaattaGTTACCATCGCCGCCATCTTGAGCTATACGTTCTTCCTTAGAGATTCTAGTGTTAAAATCCGTACCATCTTGAGTGCATCGTCCTTGTAAAACATTTCTCGGGTCCTGTGTCAAGTCTTAAATTATCAATCTGCCCTAGGCTCggctttttttgtaattttatcgAGAAGGAGCAAGTTAAAACGCAATGGCTTGTGCTACCCTCAAGAGGTCTTACGAGTTTGACCCTCTTCTTACGCCTCAACATCAACCCTCACCGAAAAGAAGAAGATGCATTCCGCTTAAACCATCAACCCCTCCTCCGTCAGTCTCAGCGGAATCCCATTTTCGTGGCGCTGCTCCAAGATTATCACAAGatccTTGAATTTGAAGATGAGTATTTCTGTGGTGACATTCAAGATATAGCTGAATTACAGTATCAAGTTTCAGCGAGCATTAATCAGGAATGGAGAAGACTCCAGAGGCGAAAGCATCTCAGAGTGCCATGTCCAAGTTCCCCTGAAATGAGTTCTTTCTCTTCATATTCACCTGGATCTTCTCCCCCACGGAAAGAACAACCTCTTTTCACTCTTAAACAAGTAACGCTCATCTGTGAAAGAATgctaaaagaaagagaagcaCAAGTTACAGAGGAATACGATAAagttttgagagaaaaactgGCAGaacAATATGATGCATTTGTCAAGTTTAATTATGATCAGGTGCAGAGAAGATTTCAAGAGACTGCACCAACATCGTTGAAGGAGGCCATCGTTAAGATATCCGCTCAGAAACAGTGTCCGAATGAAGGCAGGATTGTTCGATCGGTCCTTCAAGAATTCGATTGGAGTAAAACGGAGATACAGAAGCAGTTAAAGTTCGCGGTTAAAGATGGTTTGATTCTTCAGGTGACTACATTTTCTAGCCATGGGAGTACTAAAGGAATCCCTCAAACTGCTTACAGGATTCTTCGGAAAGATGGCGAAGACGAGGATGAAATagagaagcaaaagaaaaaattgagttcCAACACTCATGACTGGTATTGCTGGGAATGTCACAAAGCAGGAGAAGTGATTGCATGTGAATACTGTCCTCGTGTGTTTCACAGGAAGTGTGCTCATTCTGGTACAGTTGCAAATGGCAAATGGAAATGCCCATCCTGCCAGCCCCAGAAGCTCTCTGCCTTGATGGCAAACAAGACACCAGACCAGCTTGCTAAGTTGCTGAAATTTACTCTggagagaatgaaagaaaagGCCAAGGAATTGATGGAGCCAATTTCTCAAGATGAGCATCCAGATTATGAGGACTTCATATTCAAACCAATGGATCTTAAGAATTTGGAAAAGCtggttgaaaagaaatcatttaagTCTCCTAAAGAATTCAGGGAAGAATCTCAATGGATATTTCACAATGCGATCATTTATTTTGGAgacGATGATGATATCACAGATCTTGCAGAAGCCATCATGGAAGACTGCGATGGAGAGcttgAAGAGATGGTTAGATGCCCAGATTGTTACTTGATGTCAAATTTACGAACTAAAAATTGGTTCTGCAAACCTTGTTATTTCCCCCATGAGCTTGTGTGGGCAAAGATGACAGGGGAACCACCGTGGCCTGCTAAGttgttgAGTTGGAATAATGATGAGACGAAAGCTCTGGTGCGATTCTTTGGGGCTGCACATCAAAGGGCCTGGGTTGGCCGGAAACACGTGATGCCAATCACAAGTAAGCCGGAAGTCAAAAAACGATCTCAAAGATGGGTCCAGGCTAATGAAGAGATGAAAGAATATCAGAGGCAGCTGGCTCTGCTGTACCCGGACGCTAATAAAAAGGAAACTCCCCCTCTGCCAAAAACCGAGACCAAGGAATGTCAGACGGATGTAGTCTTGAATGaggaagacaaagaaaagataaaacagtTGGAAGAAAAGGTTCGGCAGCAAGAAGAGGAACTGAAGTCACTCCAGGCGGACTTGAAGTGCGAGCGGGAGCGCGCTAAGCAGCTGGTCGAAggagcgaaaaaaaagaaggaagaacaAGACCAACGAGTGTTACGTGACAAGTCTGTGAGTGAACAGAAGGAAACATCCGAGAACTGTGGCAGTAGCGGCCCAACTATTGACCTTTCCATGACTAGGGATCAGTCAAGTGTTATAAAAATGTTACAGGAGGCGCTCGAAAGAGAGAGACAAGATAAGAAAGAACTTATAGACAAAGTCACGCGTGATACTCAAAAGAACAGGGAGCGTGACATACAACAGGCTGTGAAGCGAGCCGTGAATAAGGAGAGACTAGAACGAGAGCGTATCACAGAGGAGGCAGTGAAGAAAGCTGTAGAGAAATGCAAACAGGAAAGAGACAGGCACACTCAAAAAACGCTGCAGATTGCTAAAGACGAGGCTGAAAAATCGGTGCAGGATGCAGTCAGCTTGGCTAAGAAGAAACAATGGTGTGCGAATTGCCATGCCGAGGCTTTTTATCCGTGTTGTTGGAACACAAGCTATTGTACTTTGGAATGTCAAAAGGCTCACTGGTGCTCACATAGGTTCCATTGTTTGAGGGTTACTTGTAGCTGCAATCGAGATAGCCCGATGACGCAATCGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21524 all species →	SAMD1_WH	SAM domain-containing protein 1, WH domain	Domain	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR048589 all species →	Domain	SAM domain-containing protein 1-like, WH domain	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR044075 all species →	Domain	PRKCBP1, PHD finger	Interproscan
IPR047268 all species →	Domain	Zinc finger MYND domain-containing protein 11, PWWP domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR047269 all species →	Family	Zinc finger MYND domain-containing protein 11	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46379 all species →	ZINC FINGER MYND DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0034243 all species →	Biological Process	regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for RMX55393.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.