Gene detail

Detailed information of RMX55488.1 in Pocillopora damicornis

Genomic Location: SczhEnG_1047:249695...259915
NR annotation: no NCBI-NR hit recorded
Species Pocillopora damicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pdam_00013325

ATGGACGACGAAGACGATCTTCAACCCGATTCTCCGCCCGGGTTTGTGGAAGAAATTGATAGTTCAGAACTTGAGCAAATCGAGACAGTTGGAAGAGGTGCATTTGGGGTTGTTTCCAAGGCAATATATAGACAGAGATTTGTTGTTGCTGTCAAGACAATTGAAACTGAAGCAGAAAAGAAAGCATTTAGTGTTGAGGTTCAACAGCTGTCTCGTATCAGTCATGATAATATCATCAAGTTGTATGGTGTCTGCACCACCCAGAATCCTGTATGTCTGGTCATGGAGTATGCTGAAGGAGGCTCACTTTACAACTTACTTCATTGGCAACATCCTTCATCACGATGTGCACCAATTTACACAGCCTCTCATATGATGAGCTGGGCTCTCCAGTGTGCAAGAGGAGTAGAATATTTACATGGAATCAAACCCAAAGGAATTATCCACAGAGACCTCAAGCCTCCAAATTTGTTGCTGACAAAATGTGGAACTGTTTTAAAGATTTGTGATTTTGGAACAGCTTGTGACATGAAAACATACATGACAAACAACAAGGGAAGTGCAGCGTGGATGGCTCCTGAAGTGTTTGAAGGTAACAATTACACAGAGAAGTGTGATGTTTTCAGTTTTGGTATAATCCTTTGGGAGATGATTACTCGCCGTAAGCCTTATGAGGACATGTCTGGATTCAATGCTTTCAGAATAATGTGGGCTGTTCATAATGGAACGAGGCCTCCTTTAATAGCAAATATTCCAAAACCAATTGAAGATCTAATGACAAGCTGCTGGGATAAGGTGCCAGCAAAGAGACCATCATTTACAAGAATTGTTCACATACTTCAACATTTAGTGCAATTCTTTCCAGGTGCAGATACTTGCCTTGTTTTTCCAGTTGGAACTTCAAGTACAAGCACAGATGAAAGCAGCACAAGCTCAGACCTGTCTCTGTTAAGCCCTGAAATGGATCAGAATGGTGGGGAAATGTCCACACAGGGTAGCACATTGAGTGACACTGTCATCGGAATCAAGAGTCAGCCATCTACTGAGAGTGATGAAGAAGGTTCCTATGAAATTGAGGATGAGGAAAAAGAAAATGATGAAACTCCAGTCCCAGGAAAATTAGAAGGTGAATCTCCTTTGGAGGGTGAATATGAAAGTCCTCACCGTGCAGCCTCTCCAACCATTACTATCTCAGTTGACAACAAGAGTCCTACAGCTCAGTTTGTGCGACAGCGGTCAGATTCTGGAGGGACCAGTCACAGGACGGGAAAAGCTCCAGTGAGCCCTTTACCTGGACCAGTTCCAGGTATTAATTTTGAGCCAATCAAAATTGTTCCAGCATCGGCTTCTCCAAGCTCAAACTCTAGCTTGATGACCTCATCTCCATTGCCATCTGAGGTGAGCCCAGTGAAGGCTTCAAGTGCAAGAATTTCCTATCCACCAGTGAGTCCTGCTGTCAGTTCTGGTTACTATCCAAATTACACTTCAGACATCCAACCAAGTGGAGGAATGCAGCAGGCACCATTTTATCCACCTGGTAGCCTTATGTCTACAGCTCCATCAACAGGACAACCACTGATCTATTCTGAGGCTTCAGGGTCTGGTTTTCTGGGAGGTGCAACATCCCCATACAAATCTCCCAGTCCTATTCCCCCAAATTATGGTCAGCAAGGGGCTTACCCATCAAACACCATGTACCCCCCTGCCACTAGCTATGCCTTATCCACACCAACCAGTACTAGTCCATTGCAAATGCCCACATCAAGCACTGTGCCATCAGTACCTAGAAATACTCCTGTGTCGGGCTTTCATGCACCACAGCCACCTGATGGTTTGGACATGGAAGAACTACGGCTGGCCCTACAGAATGATCTTGACCCTCCAGAACATAGCAATAGAGTGCGCTTTAATTCCAGCGGCCCTTCTTCACAGGGATCTCATGCTGTGGGATCTGGATTTTCCAGTCCATCAAGTTCAGGAACCAGCAGTCCTTACCCAGACAGGAAGACAAGTTGGCCTGTGAGTTCCCCACACACACACAACCATCCTCATCCTATGACAAGATCTGTGTCTTCTCCAGAAAGGAAGTTCAGTGGAGAAAAGAAGAGCCCTTTGGCACGGAGACGTGAACAAGATCAATCAGGGTTCCCAAGTATTCTACAGACTTTGGCTACCCATTTGCAGCCTATTGCACCAAACCCTGCAATTCCAGAGTCACAGGCAATTTACGAGGAGCATATAAAGCTTGCAAGGGAATACATTCAAGTTCAAACAGAAATGGCAATGATTCTGCAAAAGAAGCTTGAACTTGAAAAAGACTTGGAAGAATATGAAACAGAACAGCAAGTTAATGCTCAATATGTAGAGGAGTTTGCAATGTTGACGAGTGAAAAGGAAAATCTCCTTTTGCTTCACAAAAATTTGAAGTCACAGCTAGAGGAAATGAAACGGCAGCCACCTGCTCTGATACCTGGTTGTCCACTAAGTAGCCAGTATAGATGA

Transcript

rna-pdam_00013325

TGGCGGCTGTCACATGAGCGACCTCAACCTTCCTGACTGTAAGAAGATTTAAAATGGACGACGAAGACGATCTTCAACCCGATTCTCCGCCCGGGTTTGTGGAAGAAATTGATAGTTCAGAACTTGAGCAAATCGAGACAGTTGGAAGAGGTGCATTTGGGGTTGTTTCCAAGGCAATATATAGACAGAGATTTGTTGTTGCTGTCAAGACAATTGAAACTGAAGcagaaaagaaagcatttAGTGTTGAGgTTCAACAGCTGTCTCGTATCAGTCATGATAATATCATCAAGTTGTATGGTGTCTGCACCACCCAGAATCCTGTATGTCTGGTCATGGAGTATGCTGAAGGAGGCTCACTTTACAACTTACTTCATTGGCAACATCCTTCATCACGATGTGCACCAATTTACACAGCCTCTCATATGATGAGCTGGGCTCTCCAGTGTGCAAGAGGAGTAGAATATTTACATGGAATCAAACCCAAAGGAATTATCCACAGAGACCTCAAGCCTCCAAAtttgttgCTGACAAAATGTGGAACTGTTTTAAAGATTTGTGATTTTGGAACAGCTTGTGACATGAAAACATACATGACAAACAACAAGGGAAGTGCAGCGTGGATGGCTCCTGAAGTGTTTGAAGGTAACAATTACACAGAGAAGTGTGATGTTTTCAGttttggtaTAATCCTTTGGGAGATGATTACTCGCCGTAAGCCTTATGAGGACATGTCTGGATTCAATGCTTTCAGAATAATGTGGGCTGTTCATAATGGAACGAGGCCTCCTTTAATAGCAAATATTCCAAAACCAATTGAAGATCTAATGACAAGCTGCTGGGATAAGGTGCCAGCAAAGAGACCAtcatttacaagaattgtTCACATACTTCAACATTTAGTGCAATTCTTTCCAGGTGCAGATACTTGCCTTGTTTTTCCAGTTGGAACTTCAAGTACAAGCACAGATGAAAGCAGCACAAGCTCAGACCTGTCTCTGTTAAGCCCTGAAATGGATCAGAATGGTGGGGAAATGTCCACACAGGGTAGCACATTGAGTGACACTGTCATCGGAATCAAGAGTCAGCCATCTACTGAGAGTGATGAAGAAGGTTCCTATGAAATTGAGgatgaggaaaaagaaaatgatgaaactcCAGTCCCAGGAAAATTAGAAGGTGAATCTCCTTTGGAGGGTGAATATGAAAGTCCTCACCGTGCAGCCTCTCCAACCATTACTATCTCAGTTGACAACAAGAGTCCTACAGCTCAGTTTGTGCGACAGCGGTCAGATTCTGGAGGGACCAGTCACAGGACGGGAAAAGCTCCAGTGAGCCCTTTACCTGGACCAGTTCCAGGTATTAATTTTGAGCCAATCAAAATTGTTCCAGCATCGGCTTCTCCAAGCTCAAACTCTAGCTTGATGACCTCATCTCCATTGCCATCTGAGGTGAGCCCAGTGAAGGCTTCAAGTGCAAGAATTTCCTATCCACCAGTGAGTCCTGCTGTCAGTTCTGGTTACTATCCAAATTACACTTCAGACATCCAACCAAGTGGAGGAATGCAGCAGGCACCATTTTATCCACCTGGTAGCCTTATGTCTACAGCTCCATCAACAGGACAACCACTGATCTATTCTGAGGCTTCAGGGTCTGGTTTTCTGGGAGGTGCAACATCCCCATACAAATCTCCCAGTCCTATTCCCCCAAATTATGGTCAGCAAGGGGCTTACCCATCAAACACCATGTACCCCCCTGCCACTAGCTATGCCTTATCCACACCAACCAGTACTAGTCCATTGCAAATGCCCACATCAAGCACTGTGCCATCAGTACCTAGAAATACTCCTGTGTCGGGCTTTCATGCACCACAGCCACCTGATGGTTTGGACATGGAAGAACTACGGCTGGCCCTACAGAATGATCTTGACCCTCCAGAACATAGCAATAGAGTGCGCTTTAATTCCAGCGGCCCTTCTTCACAGGGATCTCATGCTGTGGGATCTGGATTTTCCAGTCCATCAAGTTCAGGAACCAGCAGTCCTTACCCAGACAGGAAGACAAGTTGGCCTGTGAGTTccccacacacacacaaccaTCCTCATCCTATGACAAGATCTGTGTCTTCTCCAGAAAGGAAGTTCAGTGGAGAAAAGAAGAGCCCTTTGGCACGGAGACGTGAACAAGATCAATCAGGGTTCCCAAGTATTCTACAGACTTTGGCTACCCATTTGCAGCCTATTGCACCAAACCCTGCAATTCCAGAGTCACAGGCAATTTACGAGGAGCATATAAAGCTTGCAAGGGAATACATTCAAGTTCAAACAGAAATGGCAATGATTCTGCAAAAGAAgcttgaacttgaaaaagacTTGGAAGAATATGAAACAGAACAGCAAGTTAATGCTCAATATGTAGAGGAGTTTGCAATGTTGACGAGTGAAAAGGAAAATCTCCTTTTGcttcacaaaaatttgaagtcaCAGCTAGAGGAAATGAAACGGCAGCCACCTGCTCTGATACCTGGTTGTCCACTAAGTAGCCAGTATAGATGACTGACCACAGAGTAAACACACAAACAGTGTACAGTGTATATAATAATTCAGATATTTGCAGTTatagaaaatcaaaaattatttctttcctgGTTTTAGGGAATTTGTTTCCTCACATCAACTTCTGtattccttccttccttcccaTTCTAACAAGACTCTAATTTCAgtttatgaatattaatgtgATAGCATGGCATGAAATTTAGTAActatgtaattaaaattatggGAATGGACAGAAAATTGTCCTATATAAGGTCATGTGATATTTATAGCATGGCTGCAGATGTTATCTACCTTAGTATTTTTTCTGTATCTTATGTCTAAGGATTGCTTTCCTTTCACATAATTGCACAGccagtgtttgtttttaatgaattattttatttgaatcttCATTTATTAATGTCCTTCTTAATAATTGAATTAATTCTAAATCAGTGCATCAGCTTCAAAGTTGCTTTTTGTAGGAGAAAAAATGTGACTGAGTTATAATttatgactgtgaatatatgaaaatcatcatGTAAACTGTGgtttaagaaatgaagataaaagcAGTAGTCAAAATAAGgtcagaaaaaattcagtcatGTATAGGATTTGACTCCATGAGCTCTGCCATACTGCTGCAGTGCTCTACCAGTTTCCACAGCTGCTTAAgtggtgttcattactgcaaagattgcttttattttcataagcCTTAACTGATGAACAAAATATGTTATATTCAGGAAATTTCGTaaggttttctttgttgcaCACATGCATTTTTCCATTCACACAAGCTACTGCTGGTAAGGAACTTACAATCAAAAGTTATTTCTACCACCTCAATTACTAAGTTATAATTTAAGATTTGTTGTTGGTGCTGTAATTTGGATGGAATCAGGAACCATTTTAGAATAAATTGGTACATAGTGATTGTAAATTGAACAGAAACATTCACTGCAATAAGTGTTACCTCTGACAATAAAAAAGTGGAGTTATGCACCACAATTTTTATTACTCTCCTAAATGTATAATGGAATACGGCAAAAATGATGGtcctttttgtaatttaagtGTTTTGTATATTCTATGGAGGcaacagacaaaaataaatttttaaaaacttaacatAACAACCAAtttaacagggtaatttagtgttaacaacttggttgaaaatgtaaatggacaaccataaagagtttaaaggctgacgtttcaagcattagccaTTCGTCAGAGCTCTGATGAAtggctaacactcaaaacatcagccttacagaggccaatttacgttttcaactcagttgataacactaaattaccctattatactctcccaccggcgcaacaccacagtttctttagaaacttactccctcTGTAACAACCAGTTTGTTGCTAAGTAGTAAATAATTCACTCAACAGTGACTGGATGAAGTTATCAatagaatgaataaaaaagtttttggcataaaaga

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR017421 all species →	Family	Mitogen-activated protein (MAP) kinase kinase kinase 7-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46716 all species →	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0004709 all species →	Molecular Function	MAP kinase kinase kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04427	MAP3K7, TAK1; mitogen-activated protein kinase kinase kinase 7	EC:2.7.11.25	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.